Wall clock time and date at job start Mon Mar 30 2020 01:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 C 1.33342 * 122.70307 * 84.73272 * 4 2 1 6 6 S 1.76170 * 108.10252 * 179.88360 * 5 4 2 7 7 C 1.70967 * 90.35500 * 0.32091 * 6 5 4 8 8 S 1.76208 * 124.95038 * 179.83666 * 7 6 5 9 9 C 1.81001 * 99.99882 * 359.97357 * 8 7 6 10 10 C 1.53002 * 109.47032 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.47139 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.46918 * 180.02562 * 11 10 9 13 13 H 1.07992 * 120.00115 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99440 * 180.02562 * 12 11 10 15 15 N 1.31508 * 120.00662 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99459 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47304 * 89.99939 * 16 14 12 18 18 H 1.48504 * 109.47216 * 209.99884 * 16 14 12 19 19 H 1.48495 * 109.47425 * 329.99607 * 16 14 12 20 20 N 1.29758 * 110.09916 * 359.81391 * 7 6 5 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 24 24 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 25 25 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 26 26 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 27 27 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 28 28 H 1.07993 * 125.94837 * 0.02562 * 5 4 2 29 29 H 1.08996 * 109.47303 * 300.00201 * 9 8 7 30 30 H 1.08999 * 109.46872 * 60.00021 * 9 8 7 31 31 H 1.08996 * 109.47358 * 300.00310 * 10 9 8 32 32 H 1.09004 * 109.46702 * 60.00271 * 10 9 8 33 33 H 1.08996 * 109.47430 * 300.00488 * 11 10 9 34 34 H 1.08999 * 109.46638 * 60.00243 * 11 10 9 35 35 H 0.96994 * 120.00658 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 2.1755 -0.0997 -2.4070 6 16 2.7854 -1.2787 -3.5652 7 6 2.7807 -2.4861 -2.3547 8 16 3.2741 -4.1602 -2.5969 9 6 3.7163 -4.1069 -4.3512 10 6 4.1895 -5.4909 -4.8002 11 6 4.5627 -5.4460 -6.2833 12 6 5.0282 -6.8094 -6.7256 13 1 5.0556 -7.6260 -6.0194 14 6 5.4202 -7.0138 -8.0316 15 7 5.3873 -6.0192 -8.8914 16 14 5.9979 -8.7035 -8.5797 17 1 4.8362 -9.4901 -9.0665 18 1 6.9899 -8.5564 -9.6749 19 1 6.6269 -9.4075 -7.4335 20 7 2.3612 -1.9898 -1.2316 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.8934 -0.5137 0.8900 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.9577 0.9377 -2.6134 29 1 2.8453 -3.8127 -4.9367 30 1 4.5169 -3.3829 -4.5022 31 1 5.0607 -5.7847 -4.2146 32 1 3.3891 -6.2152 -4.6490 33 1 3.6913 -5.1525 -6.8685 34 1 5.3629 -4.7216 -6.4347 35 1 5.6627 -6.1631 -9.8103 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845329271.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:24 Heat of formation + Delta-G solvation = -5.421536 kcal Electronic energy + Delta-G solvation = -15413.453427 eV Core-core repulsion = 12855.731248 eV Total energy + Delta-G solvation = -2557.722179 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.97146 -36.43227 -36.08223 -34.11140 -30.66422 -29.55008 -28.08582 -26.91765 -25.48816 -23.42274 -21.99177 -20.20438 -19.51481 -18.53973 -17.66586 -16.62499 -16.49828 -16.24233 -15.84177 -15.42023 -14.94889 -14.77215 -14.41299 -13.95137 -13.76857 -13.62336 -13.17423 -12.99565 -12.78699 -12.76189 -12.45490 -12.14707 -12.12980 -11.96496 -11.71243 -11.67738 -11.34171 -11.16770 -10.87733 -10.66482 -10.55186 -10.23276 -8.67667 -8.20325 -6.30795 -0.47681 0.00415 0.05406 0.68356 1.29884 1.42421 1.42704 1.53959 1.64588 2.41887 3.13834 3.29311 3.86474 3.89490 3.95783 4.21010 4.22115 4.38284 4.44610 4.45406 4.73782 4.79823 4.87266 4.88590 4.97195 5.05850 5.10698 5.20479 5.35004 5.37232 5.49509 5.67224 5.82602 6.22065 6.55057 6.85034 7.38461 8.91372 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.056007 B = 0.003090 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.816931 B = 9058.324620 C = 9383.083387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.022 4.022 3 C -0.140 4.140 4 C 0.069 3.931 5 C -0.252 4.252 6 S 0.145 5.855 7 C 0.001 3.999 8 S -0.008 6.008 9 C -0.111 4.111 10 C -0.081 4.081 11 C 0.032 3.968 12 C -0.544 4.544 13 H 0.061 0.939 14 C 0.002 3.998 15 N -0.931 5.931 16 Si 0.962 3.038 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.264 1.264 20 N -0.483 5.483 21 H 0.039 0.961 22 H 0.062 0.938 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.051 0.949 28 H 0.209 0.791 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.000 1.000 34 H 0.000 1.000 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.175 15.198 15.521 23.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.043 4.043 3 C -0.198 4.198 4 C -0.065 4.065 5 C -0.394 4.394 6 S 0.395 5.605 7 C -0.384 4.384 8 S 0.226 5.774 9 C -0.260 4.260 10 C -0.121 4.121 11 C -0.008 4.008 12 C -0.582 4.582 13 H 0.080 0.920 14 C -0.196 4.196 15 N -0.571 5.571 16 Si 0.787 3.213 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.188 1.188 20 N -0.203 5.203 21 H 0.058 0.942 22 H 0.082 0.918 23 H 0.102 0.898 24 H 0.096 0.904 25 H 0.089 0.911 26 H 0.100 0.900 27 H 0.071 0.929 28 H 0.225 0.775 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.833 13.916 15.508 22.260 hybrid contribution 0.053 0.541 -0.773 0.945 sum -7.780 14.457 14.736 22.061 Atomic orbital electron populations 1.21793 0.92763 1.01581 1.03343 1.19822 0.96624 0.95903 0.91968 1.21873 1.01021 0.93179 1.03702 1.20773 1.00389 0.87912 0.97412 1.27055 1.11427 1.05996 0.94968 1.84261 1.60748 1.00824 1.14638 1.28586 1.07960 1.05388 0.96493 1.85719 1.78910 0.99837 1.12898 1.23918 1.05265 1.03893 0.92946 1.21199 1.00833 0.92384 0.97635 1.18972 0.95308 0.95969 0.90503 1.21657 1.43805 0.96992 0.95729 0.92035 1.25920 0.95765 1.00938 0.96963 1.70070 1.49079 1.33331 1.04650 0.85484 0.78236 0.79484 0.78087 1.19832 1.20813 1.18821 1.66499 1.15818 1.13225 1.24709 0.94162 0.91848 0.89822 0.90385 0.91119 0.90010 0.92947 0.77458 0.88742 0.88749 0.91603 0.91596 0.98160 0.98151 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.18 71.98 0.66 -1.36 16 2 C -0.02 -0.38 3.33 -11.54 -0.04 -0.42 16 3 C -0.14 -1.64 8.70 71.98 0.63 -1.02 16 4 C 0.07 1.65 5.72 41.41 0.24 1.88 16 5 C -0.25 -5.21 10.34 66.71 0.69 -4.52 16 6 S 0.14 3.62 21.54 -56.49 -1.22 2.41 16 7 C 0.00 0.02 7.59 130.55 0.99 1.01 16 8 S -0.01 -0.24 22.31 -56.49 -1.26 -1.50 16 9 C -0.11 -3.62 4.63 71.98 0.33 -3.29 16 10 C -0.08 -3.18 5.16 30.60 0.16 -3.02 16 11 C 0.03 1.58 4.97 29.85 0.15 1.73 16 12 C -0.54 -30.11 9.11 25.60 0.23 -29.87 16 13 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 14 C 0.00 0.13 5.46 84.66 0.46 0.59 16 15 N -0.93 -55.40 13.29 21.45 0.28 -55.11 16 16 Si 0.96 43.54 29.54 68.60 2.03 45.57 16 17 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 18 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 19 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 20 N -0.48 -14.67 10.59 -188.53 -2.00 -16.67 16 21 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 22 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 24 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.07 0.66 6.93 -2.39 -0.02 0.64 16 26 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.21 2.79 6.98 -2.91 -0.02 2.77 16 29 H 0.09 3.00 7.97 -2.40 -0.02 2.98 16 30 H 0.09 2.99 7.97 -2.40 -0.02 2.97 16 31 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 34 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 35 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -64.00 320.08 3.40 -60.60 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: 1.06 Total: 2.97 kcal Atomic # 6 Polarization: -42.77 SS G_CDS: 4.50 Total: -38.27 kcal Atomic # 7 Polarization: -70.07 SS G_CDS: -1.71 Total: -71.78 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -2.48 Total: 0.91 kcal Total: -64.00 3.40 -60.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845329271.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.183 kcal (2) G-P(sol) polarization free energy of solvation -63.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds