Wall clock time and date at job start Mon Mar 30 2020 01:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 C 1.33341 * 122.70688 * 84.99871 * 4 2 1 6 6 S 1.76162 * 108.10715 * 180.02562 * 5 4 2 7 7 C 1.70962 * 90.35721 * 0.02562 * 6 5 4 8 8 S 1.76205 * 124.95200 * 180.02562 * 7 6 5 9 9 C 1.80994 * 99.99861 * 359.97438 * 8 7 6 10 10 H 1.09002 * 109.47339 * 54.99936 * 9 8 7 11 11 C 1.52998 * 109.47014 * 294.99745 * 9 8 7 12 12 C 1.53001 * 109.47018 * 174.99884 * 9 8 7 13 13 C 1.50699 * 109.47037 * 295.00018 * 12 9 8 14 14 H 1.07996 * 120.00591 * 0.02562 * 13 12 9 15 15 C 1.37884 * 120.00038 * 180.02562 * 13 12 9 16 16 N 1.31522 * 119.99485 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00143 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.46847 * 59.99909 * 17 15 13 19 19 H 1.48498 * 109.46988 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46867 * 299.99935 * 17 15 13 21 21 N 1.29760 * 110.09692 * 359.73737 * 7 6 5 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 27 27 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 29 29 H 1.08006 * 125.94278 * 0.03957 * 5 4 2 30 30 H 1.09000 * 109.47313 * 60.00531 * 11 9 8 31 31 H 1.09011 * 109.46842 * 180.02562 * 11 9 8 32 32 H 1.08990 * 109.47649 * 299.99770 * 11 9 8 33 33 H 1.09001 * 109.46883 * 54.99957 * 12 9 8 34 34 H 1.09003 * 109.47117 * 174.99782 * 12 9 8 35 35 H 0.97003 * 119.99226 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 2.1804 -0.0985 -2.4058 6 16 2.7845 -1.2790 -3.5654 7 6 2.7795 -2.4864 -2.3551 8 16 3.2725 -4.1606 -2.5974 9 6 3.7146 -4.1073 -4.3517 10 1 4.4520 -3.3217 -4.5169 11 6 2.4643 -3.8164 -5.1840 12 6 4.3037 -5.4559 -4.7704 13 6 5.6011 -5.6861 -4.0391 14 1 5.9686 -4.9450 -3.3448 15 6 6.3190 -6.8431 -4.2564 16 7 5.8712 -7.7458 -5.1015 17 14 7.9269 -7.1288 -3.3494 18 1 7.6757 -7.1320 -1.8858 19 1 8.4986 -8.4376 -3.7559 20 1 8.8840 -6.0442 -3.6851 21 7 2.3655 -1.9887 -1.2305 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.9672 0.9402 -2.6110 30 1 2.0446 -2.8557 -4.8858 31 1 2.7305 -3.7848 -6.2407 32 1 1.7269 -4.6019 -5.0190 33 1 3.6010 -6.2517 -4.5232 34 1 4.4875 -5.4543 -5.8448 35 1 6.3766 -8.5596 -5.2546 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845330734.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:47 Heat of formation + Delta-G solvation = 16.129133 kcal Electronic energy + Delta-G solvation = -16068.212402 eV Core-core repulsion = 13511.424730 eV Total energy + Delta-G solvation = -2556.787672 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.68960 -35.10603 -34.80866 -32.23176 -29.43755 -27.70243 -27.28808 -25.53604 -23.46177 -22.50509 -20.62678 -18.90739 -18.26929 -16.46821 -16.29626 -15.31255 -15.03335 -14.63006 -14.40920 -14.11201 -13.68987 -13.30157 -13.04099 -12.61021 -12.31797 -12.17884 -11.98418 -11.71035 -11.34332 -11.20592 -11.19040 -10.97255 -10.73254 -10.67378 -10.57676 -9.80890 -9.69267 -9.59780 -9.26300 -9.13276 -8.76920 -8.44941 -7.03266 -6.10436 -4.13473 0.85617 1.40696 1.66542 2.00123 2.93879 3.02064 3.31902 3.35758 3.39751 4.39836 4.40506 4.81548 5.03095 5.22416 5.27349 5.29279 5.42554 5.46421 5.51417 5.58747 5.66925 5.71291 5.80306 5.87449 6.11324 6.15277 6.17092 6.28035 6.42313 6.50099 7.38598 7.44612 7.85893 7.88604 8.19919 8.90817 9.51713 11.00449 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.031212 B = 0.004513 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.888279 B = 6203.057382 C = 6603.756440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.022 4.022 3 C -0.143 4.143 4 C 0.090 3.910 5 C -0.290 4.290 6 S 0.125 5.875 7 C 0.029 3.971 8 S 0.044 5.956 9 C -0.089 4.089 10 H 0.088 0.912 11 C -0.156 4.156 12 C 0.042 3.958 13 C -0.527 4.527 14 H 0.063 0.937 15 C 0.063 3.937 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.276 1.276 21 N -0.471 5.471 22 H 0.058 0.942 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.087 0.913 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.170 0.830 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.030 0.970 34 H 0.041 0.959 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.242 15.710 4.528 18.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.044 4.044 3 C -0.201 4.201 4 C -0.044 4.044 5 C -0.434 4.434 6 S 0.376 5.624 7 C -0.356 4.356 8 S 0.280 5.720 9 C -0.219 4.219 10 H 0.107 0.893 11 C -0.215 4.215 12 C 0.004 3.996 13 C -0.566 4.566 14 H 0.082 0.918 15 C -0.139 4.139 16 N -0.532 5.532 17 Si 0.721 3.279 18 H -0.199 1.199 19 H -0.212 1.212 20 H -0.201 1.201 21 N -0.190 5.190 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.105 0.895 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.187 0.813 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.873 14.186 4.598 17.353 hybrid contribution 0.612 1.294 0.284 1.460 sum -8.261 15.480 4.882 18.213 Atomic orbital electron populations 1.21797 0.93909 1.02322 1.01729 1.19675 0.95774 0.94829 0.94075 1.21873 1.01419 0.94894 1.01934 1.20220 0.99810 0.88875 0.95532 1.26650 1.14959 1.04908 0.96856 1.84158 1.62536 1.00711 1.14976 1.29299 1.04995 1.06506 0.94822 1.86353 1.75304 0.96035 1.14352 1.24006 0.99599 1.07000 0.91250 0.89337 1.22319 0.97294 1.01242 1.00672 1.19031 0.95896 0.87028 0.97684 1.21196 1.05830 1.04462 1.25100 0.91845 1.24970 0.98007 0.95869 0.95097 1.69941 1.39066 1.09134 1.35013 0.86624 0.83497 0.77372 0.80456 1.19911 1.21249 1.20128 1.66526 1.16780 1.11497 1.24229 0.92276 0.92623 0.92122 0.89499 0.92016 0.92361 0.92425 0.81291 0.92954 0.90982 0.91266 0.95161 0.94063 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.18 37.16 0.34 -1.04 16 2 C -0.02 -0.25 3.33 -91.77 -0.31 -0.56 16 3 C -0.14 -1.28 8.69 37.16 0.32 -0.96 16 4 C 0.09 1.33 5.72 -84.19 -0.48 0.85 16 5 C -0.29 -3.88 10.33 29.02 0.30 -3.58 16 6 S 0.12 1.86 18.68 -107.50 -2.01 -0.15 16 7 C 0.03 0.52 7.38 51.89 0.38 0.90 16 8 S 0.04 0.89 21.06 -107.50 -2.26 -1.38 16 9 C -0.09 -1.73 2.08 -26.73 -0.06 -1.78 16 10 H 0.09 1.71 7.73 -51.91 -0.40 1.31 16 11 C -0.16 -2.50 8.86 37.16 0.33 -2.17 16 12 C 0.04 1.01 4.44 -27.88 -0.12 0.89 16 13 C -0.53 -14.14 8.53 -34.44 -0.29 -14.43 16 14 H 0.06 1.68 7.60 -52.49 -0.40 1.28 16 15 C 0.06 1.73 5.46 -17.81 -0.10 1.64 16 16 N -0.89 -25.76 13.29 55.43 0.74 -25.03 16 17 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 N -0.47 -8.47 10.59 -10.94 -0.12 -8.59 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.46 6.93 -51.93 -0.36 0.10 16 29 H 0.17 1.76 6.97 -52.48 -0.37 1.39 16 30 H 0.05 0.77 4.70 -35.31 -0.17 0.61 16 31 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 312.15 15.07 4.70 4.70 Total: -1.00 -29.20 312.15 -8.71 -37.91 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -5.05 Total: -3.51 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: 0.32 Total: -20.25 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.62 Total: -33.62 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -4.27 Total: -1.53 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.20 -8.71 -37.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845330734.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.039 kcal (2) G-P(sol) polarization free energy of solvation -29.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds