Wall clock time and date at job start Mon Mar 30 2020 01:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 C 1.33341 * 122.70688 * 84.99871 * 4 2 1 6 6 S 1.76162 * 108.10715 * 180.02562 * 5 4 2 7 7 C 1.70962 * 90.35721 * 0.02562 * 6 5 4 8 8 S 1.76205 * 124.95200 * 180.02562 * 7 6 5 9 9 C 1.80994 * 99.99861 * 359.97438 * 8 7 6 10 10 H 1.09002 * 109.47339 * 54.99936 * 9 8 7 11 11 C 1.52998 * 109.47014 * 294.99745 * 9 8 7 12 12 C 1.53001 * 109.47018 * 174.99884 * 9 8 7 13 13 C 1.50699 * 109.47037 * 295.00018 * 12 9 8 14 14 H 1.07996 * 120.00591 * 0.02562 * 13 12 9 15 15 C 1.37884 * 120.00038 * 180.02562 * 13 12 9 16 16 N 1.31522 * 119.99485 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00143 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.46847 * 59.99909 * 17 15 13 19 19 H 1.48498 * 109.46988 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46867 * 299.99935 * 17 15 13 21 21 N 1.29760 * 110.09692 * 359.73737 * 7 6 5 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 27 27 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 29 29 H 1.08006 * 125.94278 * 0.03957 * 5 4 2 30 30 H 1.09000 * 109.47313 * 60.00531 * 11 9 8 31 31 H 1.09011 * 109.46842 * 180.02562 * 11 9 8 32 32 H 1.08990 * 109.47649 * 299.99770 * 11 9 8 33 33 H 1.09001 * 109.46883 * 54.99957 * 12 9 8 34 34 H 1.09003 * 109.47117 * 174.99782 * 12 9 8 35 35 H 0.97003 * 119.99226 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 2.1804 -0.0985 -2.4058 6 16 2.7845 -1.2790 -3.5654 7 6 2.7795 -2.4864 -2.3551 8 16 3.2725 -4.1606 -2.5974 9 6 3.7146 -4.1073 -4.3517 10 1 4.4520 -3.3217 -4.5169 11 6 2.4643 -3.8164 -5.1840 12 6 4.3037 -5.4559 -4.7704 13 6 5.6011 -5.6861 -4.0391 14 1 5.9686 -4.9450 -3.3448 15 6 6.3190 -6.8431 -4.2564 16 7 5.8712 -7.7458 -5.1015 17 14 7.9269 -7.1288 -3.3494 18 1 7.6757 -7.1320 -1.8858 19 1 8.4986 -8.4376 -3.7559 20 1 8.8840 -6.0442 -3.6851 21 7 2.3655 -1.9887 -1.2305 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.9672 0.9402 -2.6110 30 1 2.0446 -2.8557 -4.8858 31 1 2.7305 -3.7848 -6.2407 32 1 1.7269 -4.6019 -5.0190 33 1 3.6010 -6.2517 -4.5232 34 1 4.4875 -5.4543 -5.8448 35 1 6.3766 -8.5596 -5.2546 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845330734.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:47 Heat of formation + Delta-G solvation = 0.028503 kcal Electronic energy + Delta-G solvation = -16068.910577 eV Core-core repulsion = 13511.424730 eV Total energy + Delta-G solvation = -2557.485848 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.87464 -36.57177 -36.03914 -34.16952 -30.61415 -29.46030 -28.04824 -26.72878 -25.33224 -23.65270 -22.13092 -20.10186 -19.41948 -18.53553 -17.69328 -16.72874 -16.48603 -16.13376 -15.64679 -15.07605 -14.99290 -14.68041 -14.30938 -13.92446 -13.73067 -13.34363 -13.25918 -13.02444 -12.78469 -12.66535 -12.49310 -12.39031 -12.10881 -12.07153 -11.67944 -11.58378 -11.34168 -11.23351 -10.72108 -10.59284 -10.46671 -10.01909 -8.49698 -8.21458 -6.30023 -0.37649 0.14493 0.25199 0.79550 1.40779 1.42982 1.50310 1.55270 1.74297 2.40987 3.14225 3.36952 3.92901 3.99409 4.02816 4.23985 4.27237 4.39358 4.42635 4.52957 4.78488 4.81251 4.85956 4.90888 4.98188 5.10524 5.13712 5.24183 5.36467 5.37111 5.38944 5.46258 5.75487 6.14727 6.67361 6.81485 7.38353 8.89727 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.031212 B = 0.004513 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.888279 B = 6203.057382 C = 6603.756440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.023 4.023 3 C -0.138 4.138 4 C 0.068 3.932 5 C -0.267 4.267 6 S 0.159 5.841 7 C 0.001 3.999 8 S -0.015 6.015 9 C -0.072 4.072 10 H 0.089 0.911 11 C -0.149 4.149 12 C 0.048 3.952 13 C -0.537 4.537 14 H 0.061 0.939 15 C 0.011 3.989 16 N -0.927 5.927 17 Si 0.953 3.047 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.266 1.266 21 N -0.492 5.492 22 H 0.037 0.963 23 H 0.065 0.935 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.208 0.792 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.006 0.994 34 H 0.028 0.972 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.642 18.663 4.807 21.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.045 4.045 3 C -0.196 4.196 4 C -0.066 4.066 5 C -0.410 4.410 6 S 0.410 5.590 7 C -0.383 4.383 8 S 0.219 5.781 9 C -0.201 4.201 10 H 0.107 0.893 11 C -0.208 4.208 12 C 0.010 3.990 13 C -0.575 4.575 14 H 0.079 0.921 15 C -0.188 4.188 16 N -0.567 5.567 17 Si 0.778 3.222 18 H -0.198 1.198 19 H -0.207 1.207 20 H -0.191 1.191 21 N -0.212 5.212 22 H 0.057 0.943 23 H 0.084 0.916 24 H 0.101 0.899 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.225 0.775 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.024 0.976 34 H 0.046 0.954 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.276 17.157 4.879 20.105 hybrid contribution 0.653 0.539 0.248 0.882 sum -8.623 17.695 5.126 20.341 Atomic orbital electron populations 1.21776 0.92684 1.01491 1.03348 1.19817 0.96732 0.95918 0.92001 1.21858 1.00890 0.93140 1.03707 1.20749 1.00409 0.87954 0.97450 1.27145 1.12141 1.06092 0.95593 1.83943 1.61422 0.99651 1.13994 1.28801 1.07331 1.05799 0.96399 1.86374 1.77153 0.99305 1.15288 1.23732 1.00960 1.04156 0.91279 0.89263 1.22276 0.95640 1.02053 1.00852 1.18818 0.94673 0.88986 0.96553 1.21544 1.06766 1.04336 1.24875 0.92055 1.25770 1.01283 0.95808 0.95936 1.70049 1.40490 1.09659 1.36544 0.85675 0.79841 0.77573 0.79108 1.19810 1.20741 1.19117 1.66504 1.16416 1.13387 1.24889 0.94329 0.91638 0.89869 0.90887 0.90042 0.93167 0.90922 0.77546 0.91278 0.89474 0.91397 0.97577 0.95430 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.18 71.98 0.66 -1.67 16 2 C -0.02 -0.48 3.33 -11.54 -0.04 -0.52 16 3 C -0.14 -1.98 8.69 71.98 0.63 -1.35 16 4 C 0.07 1.88 5.72 41.41 0.24 2.11 16 5 C -0.27 -6.22 10.33 66.71 0.69 -5.53 16 6 S 0.16 4.37 18.68 -56.49 -1.06 3.32 16 7 C 0.00 0.05 7.38 130.55 0.96 1.01 16 8 S -0.02 -0.62 21.06 -56.49 -1.19 -1.81 16 9 C -0.07 -2.82 2.08 30.59 0.06 -2.76 16 10 H 0.09 3.45 7.73 -2.39 -0.02 3.43 16 11 C -0.15 -4.68 8.86 71.98 0.64 -4.04 16 12 C 0.05 2.38 4.44 29.85 0.13 2.51 16 13 C -0.54 -29.40 8.53 25.60 0.22 -29.18 16 14 H 0.06 3.31 7.60 -2.91 -0.02 3.29 16 15 C 0.01 0.60 5.46 84.66 0.46 1.06 16 16 N -0.93 -54.67 13.29 21.45 0.28 -54.38 16 17 Si 0.95 44.12 29.54 68.60 2.03 46.15 16 18 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 21 N -0.49 -17.46 10.59 -188.53 -2.00 -19.46 16 22 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 25 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.07 0.82 6.93 -2.39 -0.02 0.80 16 29 H 0.21 3.19 6.97 -2.91 -0.02 3.17 16 30 H 0.07 1.93 4.70 -12.95 -0.06 1.87 16 31 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 32 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -64.28 312.15 3.74 -60.54 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: 1.02 Total: 4.00 kcal Atomic # 6 Polarization: -43.00 SS G_CDS: 4.65 Total: -38.35 kcal Atomic # 7 Polarization: -72.13 SS G_CDS: -1.71 Total: -73.84 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: 3.75 SS G_CDS: -2.25 Total: 1.50 kcal Total: -64.28 3.74 -60.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845330734.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.565 kcal (2) G-P(sol) polarization free energy of solvation -64.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds