Wall clock time and date at job start Mon Mar 30 2020 01:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 C 1.33336 * 122.70546 * 84.73640 * 4 2 1 6 6 S 1.76163 * 108.10424 * 179.88365 * 5 4 2 7 7 C 1.70964 * 90.35935 * 0.31726 * 6 5 4 8 8 S 1.76194 * 124.95676 * 179.77949 * 7 6 5 9 9 C 1.81003 * 99.99772 * 0.04218 * 8 7 6 10 10 H 1.09000 * 109.47262 * 304.99598 * 9 8 7 11 11 C 1.53003 * 109.47429 * 64.99984 * 9 8 7 12 12 C 1.53002 * 109.47403 * 184.99823 * 9 8 7 13 13 C 1.50705 * 109.46944 * 64.99943 * 12 9 8 14 14 H 1.07997 * 119.99986 * 0.02562 * 13 12 9 15 15 C 1.37873 * 119.99986 * 180.02562 * 13 12 9 16 16 N 1.31519 * 120.00035 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99982 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47109 * 60.00020 * 17 15 13 19 19 H 1.48500 * 109.47012 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47308 * 300.00146 * 17 15 13 21 21 N 1.29759 * 110.09586 * 359.81512 * 7 6 5 22 22 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 24 24 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 25 25 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 26 26 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 27 27 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 28 28 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 29 29 H 1.08006 * 125.94512 * 359.97438 * 5 4 2 30 30 H 1.09000 * 109.47213 * 59.99584 * 11 9 8 31 31 H 1.08999 * 109.47239 * 180.02562 * 11 9 8 32 32 H 1.08998 * 109.46722 * 300.00354 * 11 9 8 33 33 H 1.08993 * 109.47495 * 184.99812 * 12 9 8 34 34 H 1.09004 * 109.47033 * 305.00355 * 12 9 8 35 35 H 0.96997 * 119.99909 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.1754 -0.0995 -2.4071 6 16 2.7852 -1.2784 -3.5654 7 6 2.7805 -2.4860 -2.3551 8 16 3.2724 -4.1604 -2.5978 9 6 3.7153 -4.1067 -4.3520 10 1 2.8717 -3.7266 -4.9282 11 6 4.9216 -3.1857 -4.5456 12 6 4.0674 -5.5160 -4.8325 13 6 2.8441 -6.3929 -4.7568 14 1 1.9089 -5.9856 -4.4019 15 6 2.9187 -7.7150 -5.1406 16 7 4.0577 -8.2111 -5.5723 17 14 1.4025 -8.8020 -5.0460 18 1 0.3342 -8.2376 -5.9094 19 1 1.7446 -10.1701 -5.5113 20 1 0.9236 -8.8626 -3.6416 21 7 2.3611 -1.9898 -1.2319 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5140 -0.8899 25 1 1.8934 -0.5139 0.8900 26 1 1.6768 1.9562 0.8901 27 1 3.1301 1.4425 0.0005 28 1 1.6768 1.9563 -0.8899 29 1 1.9570 0.9379 -2.6136 30 1 5.7651 -3.5658 -3.9693 31 1 5.1880 -3.1531 -5.6020 32 1 4.6707 -2.1817 -4.2032 33 1 4.4191 -5.4712 -5.8631 34 1 4.8514 -5.9306 -4.1987 35 1 4.1101 -9.1411 -5.8426 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845330735.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:49 Heat of formation + Delta-G solvation = 16.108032 kcal Electronic energy + Delta-G solvation = -16071.529763 eV Core-core repulsion = 13514.741176 eV Total energy + Delta-G solvation = -2556.788587 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.68862 -35.10419 -34.80851 -32.23269 -29.43524 -27.70544 -27.28274 -25.53500 -23.46260 -22.50289 -20.62877 -18.90694 -18.26618 -16.46853 -16.30311 -15.34273 -14.86681 -14.67486 -14.57097 -14.09004 -13.63954 -13.22292 -13.02570 -12.70762 -12.30150 -12.17694 -11.99481 -11.71865 -11.33490 -11.20128 -11.16616 -10.96719 -10.73082 -10.68124 -10.58327 -9.80888 -9.69475 -9.59500 -9.26690 -9.12901 -8.76989 -8.45012 -7.03327 -6.10421 -4.13532 0.85658 1.40717 1.66553 2.00146 2.93875 3.02070 3.31841 3.35720 3.39688 4.39854 4.40488 4.81718 5.03244 5.22745 5.27355 5.29351 5.42523 5.46939 5.51395 5.58994 5.67338 5.71520 5.80318 5.87303 6.12593 6.15459 6.17164 6.28122 6.42245 6.50092 7.38625 7.44605 7.85846 7.88594 8.19866 8.90764 9.51706 11.00470 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.030176 B = 0.004605 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.658514 B = 6078.583782 C = 6631.189470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.022 4.022 3 C -0.143 4.143 4 C 0.090 3.910 5 C -0.290 4.290 6 S 0.124 5.876 7 C 0.029 3.971 8 S 0.045 5.955 9 C -0.089 4.089 10 H 0.088 0.912 11 C -0.155 4.155 12 C 0.042 3.958 13 C -0.527 4.527 14 H 0.063 0.937 15 C 0.063 3.937 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.274 1.274 21 N -0.471 5.471 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.086 0.914 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.170 0.830 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.041 0.959 34 H 0.030 0.970 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.511 17.434 6.276 18.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.043 4.043 3 C -0.201 4.201 4 C -0.044 4.044 5 C -0.434 4.434 6 S 0.376 5.624 7 C -0.356 4.356 8 S 0.280 5.720 9 C -0.219 4.219 10 H 0.107 0.893 11 C -0.215 4.215 12 C 0.004 3.996 13 C -0.566 4.566 14 H 0.082 0.918 15 C -0.139 4.139 16 N -0.532 5.532 17 Si 0.720 3.280 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.199 1.199 21 N -0.190 5.190 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.105 0.895 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.187 0.813 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.048 0.952 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.126 15.915 6.351 17.267 hybrid contribution -1.188 0.832 -0.184 1.463 sum -3.314 16.747 6.167 18.152 Atomic orbital electron populations 1.21802 0.93885 1.02405 1.01738 1.19675 0.95803 0.94798 0.94050 1.21867 1.01344 0.94918 1.01952 1.20224 0.99831 0.88818 0.95569 1.26648 1.14726 1.05089 0.96907 1.84159 1.60748 1.01460 1.16029 1.29297 1.05215 1.06258 0.94849 1.86353 1.77261 0.94862 1.13561 1.24009 1.00525 1.04691 0.92630 0.89336 1.22319 0.98107 0.97995 1.03098 1.19032 0.98014 0.85436 0.97163 1.21195 0.96123 0.95138 1.44134 0.91846 1.24965 0.96087 0.98028 0.94855 1.69936 1.24888 1.14820 1.43514 0.86626 0.83109 0.79441 0.78781 1.20129 1.21249 1.19910 1.66528 1.16725 1.11401 1.24379 0.92221 0.92114 0.92607 0.89523 0.92023 0.92399 0.92421 0.81294 0.91257 0.90980 0.92968 0.94063 0.95154 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.18 37.16 0.34 -1.09 16 2 C -0.02 -0.25 3.33 -91.77 -0.31 -0.56 16 3 C -0.14 -1.25 8.69 37.16 0.32 -0.93 16 4 C 0.09 1.33 5.72 -84.19 -0.48 0.85 16 5 C -0.29 -3.88 10.33 29.02 0.30 -3.58 16 6 S 0.12 1.85 18.68 -107.50 -2.01 -0.15 16 7 C 0.03 0.52 7.38 51.89 0.38 0.91 16 8 S 0.04 0.89 21.07 -107.50 -2.26 -1.38 16 9 C -0.09 -1.73 2.08 -26.73 -0.06 -1.78 16 10 H 0.09 1.71 7.73 -51.92 -0.40 1.31 16 11 C -0.16 -2.50 8.86 37.16 0.33 -2.17 16 12 C 0.04 1.01 4.44 -27.88 -0.12 0.89 16 13 C -0.53 -14.13 8.53 -34.44 -0.29 -14.43 16 14 H 0.06 1.68 7.60 -52.49 -0.40 1.28 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -25.76 13.29 55.43 0.74 -25.03 16 17 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 21 N -0.47 -8.47 10.59 -10.94 -0.12 -8.59 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.46 6.93 -51.93 -0.36 0.10 16 29 H 0.17 1.76 6.98 -52.48 -0.37 1.39 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.05 0.77 4.70 -35.33 -0.17 0.60 16 33 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 312.17 15.07 4.70 4.70 Total: -1.00 -29.20 312.17 -8.71 -37.90 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: -5.05 Total: -3.48 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: 0.32 Total: -20.27 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.62 Total: -33.61 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -4.27 Total: -1.53 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.20 -8.71 -37.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845330735.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.011 kcal (2) G-P(sol) polarization free energy of solvation -29.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds