Wall clock time and date at job start Mon Mar 30 2020 01:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 C 1.33336 * 122.70546 * 84.73640 * 4 2 1 6 6 S 1.76163 * 108.10424 * 179.88365 * 5 4 2 7 7 C 1.70964 * 90.35935 * 0.31726 * 6 5 4 8 8 S 1.76194 * 124.95676 * 179.77949 * 7 6 5 9 9 C 1.81003 * 99.99772 * 0.04218 * 8 7 6 10 10 H 1.09000 * 109.47262 * 304.99598 * 9 8 7 11 11 C 1.53003 * 109.47429 * 64.99984 * 9 8 7 12 12 C 1.53002 * 109.47403 * 184.99823 * 9 8 7 13 13 C 1.50705 * 109.46944 * 64.99943 * 12 9 8 14 14 H 1.07997 * 119.99986 * 0.02562 * 13 12 9 15 15 C 1.37873 * 119.99986 * 180.02562 * 13 12 9 16 16 N 1.31519 * 120.00035 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99982 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47109 * 60.00020 * 17 15 13 19 19 H 1.48500 * 109.47012 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47308 * 300.00146 * 17 15 13 21 21 N 1.29759 * 110.09586 * 359.81512 * 7 6 5 22 22 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 24 24 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 25 25 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 26 26 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 27 27 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 28 28 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 29 29 H 1.08006 * 125.94512 * 359.97438 * 5 4 2 30 30 H 1.09000 * 109.47213 * 59.99584 * 11 9 8 31 31 H 1.08999 * 109.47239 * 180.02562 * 11 9 8 32 32 H 1.08998 * 109.46722 * 300.00354 * 11 9 8 33 33 H 1.08993 * 109.47495 * 184.99812 * 12 9 8 34 34 H 1.09004 * 109.47033 * 305.00355 * 12 9 8 35 35 H 0.96997 * 119.99909 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.1754 -0.0995 -2.4071 6 16 2.7852 -1.2784 -3.5654 7 6 2.7805 -2.4860 -2.3551 8 16 3.2724 -4.1604 -2.5978 9 6 3.7153 -4.1067 -4.3520 10 1 2.8717 -3.7266 -4.9282 11 6 4.9216 -3.1857 -4.5456 12 6 4.0674 -5.5160 -4.8325 13 6 2.8441 -6.3929 -4.7568 14 1 1.9089 -5.9856 -4.4019 15 6 2.9187 -7.7150 -5.1406 16 7 4.0577 -8.2111 -5.5723 17 14 1.4025 -8.8020 -5.0460 18 1 0.3342 -8.2376 -5.9094 19 1 1.7446 -10.1701 -5.5113 20 1 0.9236 -8.8626 -3.6416 21 7 2.3611 -1.9898 -1.2319 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5140 -0.8899 25 1 1.8934 -0.5139 0.8900 26 1 1.6768 1.9562 0.8901 27 1 3.1301 1.4425 0.0005 28 1 1.6768 1.9563 -0.8899 29 1 1.9570 0.9379 -2.6136 30 1 5.7651 -3.5658 -3.9693 31 1 5.1880 -3.1531 -5.6020 32 1 4.6707 -2.1817 -4.2032 33 1 4.4191 -5.4712 -5.8631 34 1 4.8514 -5.9306 -4.1987 35 1 4.1101 -9.1411 -5.8426 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845330735.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:49 Heat of formation + Delta-G solvation = 0.011277 kcal Electronic energy + Delta-G solvation = -16072.227771 eV Core-core repulsion = 13514.741176 eV Total energy + Delta-G solvation = -2557.486595 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.87390 -36.57176 -36.03946 -34.17020 -30.61473 -29.46176 -28.04708 -26.73086 -25.33321 -23.65127 -22.13343 -20.10142 -19.41676 -18.53561 -17.70009 -16.73374 -16.49246 -15.97129 -15.84284 -15.12716 -14.89274 -14.69420 -14.24119 -13.87421 -13.83325 -13.35903 -13.26029 -13.02694 -12.78842 -12.65737 -12.50157 -12.39552 -12.11216 -12.03804 -11.68140 -11.59252 -11.34334 -11.23425 -10.72097 -10.59309 -10.46447 -10.02070 -8.49775 -8.21432 -6.30067 -0.37621 0.14512 0.25209 0.79570 1.40750 1.42933 1.50266 1.55259 1.74251 2.40954 3.14239 3.37048 3.92908 3.99386 4.02783 4.24074 4.27044 4.39433 4.42635 4.52667 4.78578 4.80939 4.85915 4.90252 4.98488 5.10488 5.13664 5.24176 5.36334 5.36698 5.39381 5.46267 5.75469 6.14692 6.67350 6.81453 7.38362 8.89760 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.030176 B = 0.004605 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.658514 B = 6078.583782 C = 6631.189470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.023 4.023 3 C -0.138 4.138 4 C 0.068 3.932 5 C -0.267 4.267 6 S 0.159 5.841 7 C 0.001 3.999 8 S -0.015 6.015 9 C -0.072 4.072 10 H 0.089 0.911 11 C -0.149 4.149 12 C 0.048 3.952 13 C -0.537 4.537 14 H 0.061 0.939 15 C 0.011 3.989 16 N -0.927 5.927 17 Si 0.953 3.047 18 H -0.266 1.266 19 H -0.282 1.282 20 H -0.273 1.273 21 N -0.492 5.492 22 H 0.035 0.965 23 H 0.083 0.917 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.208 0.792 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.028 0.972 34 H 0.006 0.994 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.703 20.188 6.352 21.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.044 4.044 3 C -0.195 4.195 4 C -0.066 4.066 5 C -0.410 4.410 6 S 0.410 5.590 7 C -0.383 4.383 8 S 0.219 5.781 9 C -0.201 4.201 10 H 0.107 0.893 11 C -0.208 4.208 12 C 0.010 3.990 13 C -0.575 4.575 14 H 0.079 0.921 15 C -0.188 4.188 16 N -0.567 5.567 17 Si 0.778 3.222 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.198 1.198 21 N -0.212 5.212 22 H 0.055 0.945 23 H 0.102 0.898 24 H 0.082 0.918 25 H 0.092 0.908 26 H 0.099 0.901 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.225 0.775 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.024 0.976 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.324 18.686 6.427 20.038 hybrid contribution -0.854 0.151 -0.145 0.879 sum -4.178 18.837 6.283 20.291 Atomic orbital electron populations 1.21787 0.92953 1.01378 1.03328 1.19815 0.96511 0.96042 0.92046 1.21849 1.01014 0.92992 1.03657 1.20753 1.00434 0.87896 0.97490 1.27144 1.11898 1.06275 0.95643 1.83944 1.59802 1.00329 1.14955 1.28799 1.07525 1.05589 0.96415 1.86374 1.79108 0.98356 1.14276 1.23734 1.01910 1.02504 0.91976 0.89263 1.22276 0.96489 0.97910 1.04139 1.18818 0.96344 0.87894 0.95978 1.21543 0.96907 0.95774 1.43298 0.92055 1.25764 0.98779 0.99511 0.94734 1.70044 1.26748 1.15175 1.44779 0.85678 0.79926 0.77834 0.78772 1.19117 1.20741 1.19809 1.66506 1.16346 1.13292 1.25047 0.94540 0.89790 0.91760 0.90755 0.90074 0.92897 0.91023 0.77548 0.91388 0.89469 0.91294 0.95427 0.97571 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.18 71.98 0.66 -1.80 16 2 C -0.02 -0.47 3.33 -11.54 -0.04 -0.51 16 3 C -0.14 -1.90 8.69 71.98 0.63 -1.28 16 4 C 0.07 1.87 5.72 41.41 0.24 2.11 16 5 C -0.27 -6.22 10.33 66.71 0.69 -5.53 16 6 S 0.16 4.37 18.68 -56.49 -1.06 3.31 16 7 C 0.00 0.05 7.38 130.55 0.96 1.01 16 8 S -0.02 -0.62 21.07 -56.49 -1.19 -1.81 16 9 C -0.07 -2.82 2.08 30.60 0.06 -2.75 16 10 H 0.09 3.45 7.73 -2.39 -0.02 3.43 16 11 C -0.15 -4.68 8.86 71.98 0.64 -4.04 16 12 C 0.05 2.38 4.44 29.85 0.13 2.51 16 13 C -0.54 -29.40 8.53 25.60 0.22 -29.18 16 14 H 0.06 3.31 7.60 -2.91 -0.02 3.29 16 15 C 0.01 0.61 5.46 84.65 0.46 1.07 16 16 N -0.93 -54.67 13.29 21.45 0.28 -54.39 16 17 Si 0.95 44.12 29.54 68.60 2.03 46.14 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 20 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 21 N -0.49 -17.45 10.59 -188.53 -2.00 -19.45 16 22 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.07 0.80 6.93 -2.39 -0.02 0.78 16 29 H 0.21 3.19 6.98 -2.91 -0.02 3.17 16 30 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.07 1.92 4.70 -12.94 -0.06 1.86 16 33 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -64.27 312.17 3.74 -60.53 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: 1.02 Total: 4.05 kcal Atomic # 6 Polarization: -43.04 SS G_CDS: 4.65 Total: -38.39 kcal Atomic # 7 Polarization: -72.13 SS G_CDS: -1.71 Total: -73.84 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: 3.75 SS G_CDS: -2.25 Total: 1.50 kcal Total: -64.27 3.74 -60.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845330735.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.545 kcal (2) G-P(sol) polarization free energy of solvation -64.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds