Wall clock time and date at job start Mon Mar 30 2020 01:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47246 * 2 1 4 4 C 1.50697 * 109.46913 * 239.99417 * 2 1 3 5 5 H 1.08004 * 120.00194 * 239.99881 * 4 2 1 6 6 C 1.37877 * 120.00270 * 60.00614 * 4 2 1 7 7 N 1.31514 * 119.99662 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00337 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47407 * 89.99632 * 8 6 4 10 10 H 1.48498 * 109.47078 * 209.99994 * 8 6 4 11 11 H 1.48505 * 109.46695 * 329.99562 * 8 6 4 12 12 C 1.53000 * 109.46971 * 119.99687 * 2 1 3 13 13 N 1.46505 * 109.47169 * 300.00065 * 12 2 1 14 14 C 1.38543 * 120.00128 * 180.02562 * 13 12 2 15 15 C 1.39570 * 120.48849 * 359.97438 * 14 13 12 16 16 C 1.38279 * 118.44477 * 180.02562 * 15 14 13 17 17 Cl 1.73601 * 120.38370 * 180.02562 * 16 15 14 18 18 N 1.32652 * 119.23580 * 359.97438 * 16 15 14 19 19 C 1.32292 * 120.92692 * 0.02562 * 18 16 15 20 20 O 1.35455 * 119.14617 * 179.97438 * 19 18 16 21 21 N 1.32292 * 121.70309 * 0.25408 * 19 18 16 22 22 H 1.08996 * 109.47011 * 300.00235 * 1 2 3 23 23 H 1.08994 * 109.46667 * 60.00223 * 1 2 3 24 24 H 1.08996 * 109.47043 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47213 * 179.97438 * 3 2 1 26 26 H 1.09003 * 109.46726 * 299.99937 * 3 2 1 27 27 H 1.08995 * 109.47566 * 59.99461 * 3 2 1 28 28 H 0.97000 * 120.00189 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.47452 * 179.97438 * 12 2 1 30 30 H 1.09005 * 109.47294 * 59.99714 * 12 2 1 31 31 H 0.97001 * 120.00087 * 359.97438 * 13 12 2 32 32 H 1.08006 * 120.78124 * 0.04750 * 15 14 13 33 33 H 0.96701 * 113.99652 * 90.00607 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2396 -2.4827 7 7 0.9430 0.8295 -2.6034 8 14 2.3225 -1.1199 -4.0078 9 1 1.3449 -2.1619 -4.4122 10 1 2.4874 -0.1406 -5.1119 11 1 3.6309 -1.7569 -3.7117 12 6 2.0400 -0.7212 1.2493 13 7 1.5517 -0.0305 2.4455 14 6 1.8867 -0.5034 3.7038 15 6 2.6885 -1.6373 3.8438 16 6 2.9964 -2.0728 5.1196 17 17 3.9902 -3.4771 5.3521 18 7 2.5245 -1.4045 6.1638 19 6 1.7667 -0.3327 5.9992 20 8 1.3038 0.3220 7.0909 21 7 1.4448 0.1129 4.7959 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 3.1301 1.4424 0.0005 26 1 1.6767 1.9562 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 0.7084 1.1607 -3.4844 29 1 3.1300 -0.7216 1.2491 30 1 1.6766 -1.7489 1.2494 31 1 0.9943 0.7584 2.3564 32 1 3.0600 -2.1621 2.9760 33 1 1.8907 1.0221 7.4078 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858566675.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:13 Heat of formation + Delta-G solvation = 3.287597 kcal Electronic energy + Delta-G solvation = -18404.142392 eV Core-core repulsion = 15298.460948 eV Total energy + Delta-G solvation = -3105.681444 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.01554 -37.99607 -37.23055 -36.56160 -34.62239 -32.69581 -31.24313 -29.81369 -25.98982 -25.84948 -25.16192 -24.03544 -22.80379 -19.35042 -18.99826 -18.03036 -17.23031 -16.07192 -15.70218 -15.32372 -14.85368 -14.71049 -14.39827 -13.96150 -13.60343 -13.01069 -12.39229 -12.38469 -12.21586 -11.62364 -11.45269 -11.29781 -11.10820 -10.92135 -10.79833 -10.73058 -10.43993 -10.29818 -9.78163 -9.55476 -9.49852 -9.25465 -8.94302 -8.50605 -7.96423 -6.13561 -4.25359 0.81987 1.26391 1.54524 2.96150 3.20804 3.28780 3.30716 3.47382 3.76593 4.29617 4.66589 4.80554 5.13587 5.29576 5.36254 5.75234 5.95233 5.97433 6.26168 6.50721 6.64380 6.71624 6.79088 6.86326 7.13944 7.30401 7.37125 7.41871 7.57114 7.72687 7.87438 7.99542 8.16214 8.24977 8.74535 9.41515 10.87821 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.025575 B = 0.004493 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.577577 B = 6230.663405 C = 7131.614936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.059 3.941 3 C -0.133 4.133 4 C -0.511 4.511 5 H 0.059 0.941 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.126 3.874 13 N -0.680 5.680 14 C 0.471 3.529 15 C -0.285 4.285 16 C 0.268 3.732 17 Cl -0.020 7.020 18 N -0.578 5.578 19 C 0.552 3.448 20 O -0.457 6.457 21 N -0.589 5.589 22 H 0.008 0.992 23 H 0.087 0.913 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.087 0.913 27 H 0.008 0.992 28 H 0.262 0.738 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.412 0.588 32 H 0.158 0.842 33 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.724 -2.186 11.833 12.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.058 3.942 3 C -0.191 4.191 4 C -0.550 4.550 5 H 0.077 0.923 6 C -0.134 4.134 7 N -0.521 5.521 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.004 3.996 13 N -0.308 5.308 14 C 0.224 3.776 15 C -0.315 4.315 16 C 0.099 3.901 17 Cl 0.008 6.992 18 N -0.313 5.313 19 C 0.246 3.754 20 O -0.260 6.260 21 N -0.326 5.326 22 H 0.027 0.973 23 H 0.106 0.894 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.106 0.894 27 H 0.027 0.973 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.251 0.749 32 H 0.175 0.825 33 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 2.962 -2.145 12.283 12.816 hybrid contribution 0.799 -0.358 -1.363 1.620 sum 3.761 -2.504 10.920 11.817 Atomic orbital electron populations 1.21857 0.97484 0.99364 1.00421 1.18346 0.93032 0.92874 0.89915 1.21851 0.98627 0.98191 1.00413 1.20904 1.32046 1.12296 0.89705 0.92314 1.24877 0.94724 0.94840 0.98944 1.69798 1.36244 1.22557 1.23471 0.86549 0.79294 0.79394 0.82508 1.20644 1.21207 1.19859 1.22099 0.98298 0.96124 0.83075 1.45303 1.52492 1.31767 1.01262 1.18223 0.86287 0.86948 0.86186 1.21849 1.09370 1.02056 0.98214 1.21170 0.91023 0.89283 0.88575 1.98416 1.66384 1.36772 1.97613 1.67167 1.17283 1.11596 1.35228 1.19445 0.85642 0.86084 0.84277 1.84698 1.47778 1.52355 1.41124 1.67443 1.30780 1.36440 0.97963 0.97307 0.89405 0.95290 0.95299 0.89409 0.97326 0.92822 0.92061 0.92067 0.74930 0.82457 0.72986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 8.08 37.16 0.30 -2.56 16 2 C 0.06 1.25 0.50 -155.66 -0.08 1.18 16 3 C -0.13 -2.83 8.08 37.16 0.30 -2.53 16 4 C -0.51 -12.30 8.01 -34.44 -0.28 -12.58 16 5 H 0.06 1.40 7.74 -52.48 -0.41 0.99 16 6 C 0.07 1.69 5.15 -17.82 -0.09 1.60 16 7 N -0.88 -22.52 9.35 55.43 0.52 -22.00 16 8 Si 0.89 19.63 29.54 -169.99 -5.02 14.61 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 10 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 12 C 0.13 2.25 3.75 -4.04 -0.02 2.24 16 13 N -0.68 -11.19 5.11 -60.29 -0.31 -11.50 16 14 C 0.47 7.58 7.70 -154.82 -1.19 6.39 16 15 C -0.28 -4.20 9.19 -39.07 -0.36 -4.56 16 16 C 0.27 3.91 7.32 -17.18 -0.13 3.78 16 17 Cl -0.02 -0.25 29.15 -51.86 -1.51 -1.76 16 18 N -0.58 -8.93 10.46 -11.91 -0.12 -9.06 16 19 C 0.55 8.39 8.71 -91.30 -0.80 7.60 16 20 O -0.46 -5.66 13.64 -18.06 -0.25 -5.91 16 21 N -0.59 -9.58 10.50 -13.98 -0.15 -9.73 16 22 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 23 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 24 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.09 2.10 6.07 -51.93 -0.32 1.78 16 27 H 0.01 0.15 6.86 -51.93 -0.36 -0.21 16 28 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 29 H 0.06 1.06 7.97 -51.93 -0.41 0.65 16 30 H 0.06 1.07 7.97 -51.93 -0.41 0.66 16 31 H 0.41 6.89 6.29 -40.82 -0.26 6.64 16 32 H 0.16 2.12 6.85 -52.48 -0.36 1.76 16 33 H 0.41 2.77 9.06 45.56 0.41 3.19 16 LS Contribution 291.91 15.07 4.40 4.40 Total: -1.00 -26.58 291.91 -7.54 -34.12 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -2.76 Total: 6.29 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -2.33 Total: 0.55 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: -0.06 Total: -52.29 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.25 Total: -5.91 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.51 Total: -1.76 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -26.58 -7.54 -34.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858566675.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.407 kcal (2) G-P(sol) polarization free energy of solvation -26.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds