Wall clock time and date at job start Mon Mar 30 2020 01:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.33330 * 122.70733 * 124.73829 * 3 2 1 5 5 S 1.76160 * 108.10685 * 179.87997 * 4 3 2 6 6 C 1.70966 * 90.35703 * 0.31882 * 5 4 3 7 7 S 1.76201 * 124.95422 * 179.83666 * 6 5 4 8 8 C 1.81004 * 99.99942 * 359.97270 * 7 6 5 9 9 C 1.53005 * 109.46997 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.47214 * 300.00185 * 9 8 7 11 11 C 1.53002 * 109.46987 * 60.00175 * 9 8 7 12 12 C 1.50699 * 109.46749 * 179.97438 * 9 8 7 13 13 H 1.08001 * 120.00086 * 0.02562 * 12 9 8 14 14 C 1.37877 * 119.99809 * 179.97438 * 12 9 8 15 15 N 1.31520 * 119.99859 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 120.00093 * 180.02562 * 14 12 9 17 17 H 1.48497 * 109.46702 * 90.00411 * 16 14 12 18 18 H 1.48497 * 109.46986 * 210.00216 * 16 14 12 19 19 H 1.48496 * 109.46828 * 330.00109 * 16 14 12 20 20 N 1.29758 * 110.09637 * 359.81394 * 6 5 4 21 21 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 24 24 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 25 25 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 26 26 H 1.08000 * 125.94511 * 359.97438 * 4 3 2 27 27 H 1.08999 * 109.47215 * 299.99831 * 8 7 6 28 28 H 1.09004 * 109.47061 * 60.00060 * 8 7 6 29 29 H 1.09003 * 109.46851 * 59.99880 * 10 9 8 30 30 H 1.08991 * 109.46974 * 179.97438 * 10 9 8 31 31 H 1.09004 * 109.47085 * 299.99990 * 10 9 8 32 32 H 1.09005 * 109.46979 * 59.99778 * 11 9 8 33 33 H 1.08995 * 109.46794 * 179.97438 * 11 9 8 34 34 H 1.08994 * 109.47060 * 300.00018 * 11 9 8 35 35 H 0.97006 * 119.99834 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8752 1.8870 0.9219 5 16 3.2075 3.5776 0.5550 6 6 2.1705 3.4981 -0.8019 7 16 1.8330 4.8386 -1.8945 8 6 2.8525 6.1272 -1.1353 9 6 2.7164 7.4235 -1.9366 10 6 3.1823 7.1855 -3.3745 11 6 1.2525 7.8684 -1.9419 12 6 3.5648 8.4964 -1.3041 13 1 4.1435 8.2757 -0.4194 14 6 3.6030 9.7595 -1.8556 15 7 2.8986 10.0281 -2.9333 16 14 4.6551 11.0894 -1.0721 17 1 6.0154 11.0588 -1.6669 18 1 4.0376 12.4175 -1.3169 19 1 4.7486 10.8490 0.3903 20 7 1.6687 2.3064 -0.9103 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 3.2842 1.3254 1.7488 27 1 2.5209 6.2964 -0.1108 28 1 3.8955 5.8104 -1.1319 29 1 2.5683 6.4095 -3.8316 30 1 3.0849 8.1088 -3.9454 31 1 4.2252 6.8685 -3.3707 32 1 0.9206 8.0379 -0.9176 33 1 1.1556 8.7921 -2.5124 34 1 0.6386 7.0925 -2.3991 35 1 2.9258 10.9166 -3.3216 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865387146.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:09 Heat of formation + Delta-G solvation = 21.631331 kcal Electronic energy + Delta-G solvation = -16204.350845 eV Core-core repulsion = 13647.801766 eV Total energy + Delta-G solvation = -2556.549079 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.57702 -36.11315 -33.49547 -31.64255 -29.59191 -26.80936 -25.75605 -25.23741 -25.10749 -23.40737 -19.83571 -18.81890 -18.13435 -16.34185 -16.09690 -15.04969 -14.82399 -14.67955 -14.00928 -13.79800 -13.53474 -13.37617 -12.80225 -12.59302 -12.22837 -11.85867 -11.49054 -11.35688 -11.28382 -10.93336 -10.89811 -10.80589 -10.41573 -10.37989 -10.11160 -9.69090 -9.59790 -9.58019 -9.34447 -8.94315 -8.72866 -8.44650 -7.12690 -6.07493 -4.19409 0.79124 1.34405 1.58233 1.93257 2.86404 2.96518 3.24176 3.31815 3.34491 4.34267 4.50255 4.94004 5.17908 5.18897 5.22966 5.41895 5.62287 5.73611 5.76654 5.86601 5.99753 6.12986 6.27514 6.33366 6.69081 6.83124 6.96451 6.99529 7.27523 7.50691 7.63959 7.79890 7.95183 8.06368 8.29762 8.79360 9.46569 10.93630 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.039477 B = 0.004421 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.095685 B = 6331.539672 C = 6785.161263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.045 4.045 3 C 0.083 3.917 4 C -0.284 4.284 5 S 0.123 5.877 6 C 0.030 3.970 7 S 0.010 5.990 8 C -0.101 4.101 9 C 0.085 3.915 10 C -0.137 4.137 11 C -0.137 4.137 12 C -0.509 4.509 13 H 0.057 0.943 14 C 0.069 3.931 15 N -0.882 5.882 16 Si 0.895 3.105 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.274 1.274 20 N -0.468 5.468 21 H 0.065 0.935 22 H 0.056 0.944 23 H 0.052 0.948 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.172 0.828 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.019 0.981 30 H 0.089 0.911 31 H 0.029 0.971 32 H 0.029 0.971 33 H 0.089 0.911 34 H 0.019 0.981 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.228 -14.136 5.720 15.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.086 4.086 3 C -0.052 4.052 4 C -0.427 4.427 5 S 0.374 5.626 6 C -0.355 4.355 7 S 0.246 5.754 8 C -0.250 4.250 9 C 0.083 3.917 10 C -0.195 4.195 11 C -0.195 4.195 12 C -0.548 4.548 13 H 0.076 0.924 14 C -0.133 4.133 15 N -0.520 5.520 16 Si 0.722 3.278 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.199 1.199 20 N -0.188 5.188 21 H 0.084 0.916 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.094 0.906 25 H 0.097 0.903 26 H 0.189 0.811 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.037 0.963 30 H 0.107 0.893 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.107 0.893 34 H 0.037 0.963 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.734 -13.181 4.589 14.064 hybrid contribution 1.184 -0.250 1.671 2.063 sum -0.550 -13.431 6.260 14.828 Atomic orbital electron populations 1.21671 0.94325 1.01382 1.02814 1.20108 0.96682 0.89077 1.02687 1.20323 0.96458 0.97228 0.91156 1.26597 1.09754 0.98461 1.07910 1.84230 1.45187 1.09252 1.23906 1.29208 1.01419 1.01834 1.03021 1.85999 1.58890 0.98060 1.32484 1.24442 0.99984 0.97404 1.03186 1.18002 0.94740 0.87149 0.91822 1.21926 0.97815 1.01245 0.98483 1.21924 0.95580 1.01969 0.99990 1.20971 1.27208 0.94537 1.12118 0.92427 1.24877 0.95388 0.98238 0.94834 1.69810 1.40249 1.21362 1.20598 0.86551 0.80416 0.81093 0.79707 1.20635 1.21148 1.19903 1.66493 1.26093 0.99338 1.26833 0.91587 0.92484 0.92912 0.90551 0.90328 0.81081 0.90072 0.90083 0.96260 0.89282 0.95206 0.95202 0.89286 0.96257 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.81 37.16 0.36 -1.13 16 2 C -0.05 -0.48 6.43 -27.88 -0.18 -0.66 16 3 C 0.08 1.19 6.07 -84.19 -0.51 0.68 16 4 C -0.28 -3.74 11.04 29.02 0.32 -3.42 16 5 S 0.12 1.86 21.54 -107.50 -2.32 -0.46 16 6 C 0.03 0.53 7.59 51.89 0.39 0.93 16 7 S 0.01 0.19 19.36 -107.50 -2.08 -1.89 16 8 C -0.10 -2.00 3.57 37.16 0.13 -1.87 16 9 C 0.08 1.95 0.52 -155.66 -0.08 1.87 16 10 C -0.14 -3.13 8.01 37.16 0.30 -2.84 16 11 C -0.14 -3.13 8.01 37.16 0.30 -2.83 16 12 C -0.51 -12.88 8.01 -34.44 -0.28 -13.16 16 13 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 14 C 0.07 1.77 5.15 -17.82 -0.09 1.67 16 15 N -0.88 -23.23 9.35 55.43 0.52 -22.71 16 16 Si 0.89 20.17 29.54 -169.99 -5.02 15.15 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 20 N -0.47 -8.07 10.41 -10.94 -0.11 -8.19 16 21 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 22 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.08 0.63 8.03 -51.93 -0.42 0.21 16 25 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.17 1.70 8.06 -52.49 -0.42 1.27 16 27 H 0.08 1.57 7.97 -51.92 -0.41 1.16 16 28 H 0.08 1.57 7.97 -51.91 -0.41 1.16 16 29 H 0.02 0.40 6.91 -51.93 -0.36 0.04 16 30 H 0.09 2.24 6.07 -51.93 -0.32 1.93 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 2.24 6.07 -51.93 -0.32 1.92 16 34 H 0.02 0.40 6.91 -51.93 -0.36 0.04 16 35 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 LS Contribution 308.56 15.07 4.65 4.65 Total: -1.00 -26.65 308.56 -8.78 -35.43 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -5.09 Total: -1.23 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: 0.67 Total: -20.76 kcal Atomic # 7 Polarization: -31.30 SS G_CDS: 0.40 Total: -30.90 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -4.40 Total: -2.35 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -26.65 -8.78 -35.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865387146.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.065 kcal (2) G-P(sol) polarization free energy of solvation -26.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds