Wall clock time and date at job start Mon Mar 30 2020 01:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.33330 * 122.70733 * 124.73829 * 3 2 1 5 5 S 1.76160 * 108.10685 * 179.87997 * 4 3 2 6 6 C 1.70966 * 90.35703 * 0.31882 * 5 4 3 7 7 S 1.76201 * 124.95422 * 179.83666 * 6 5 4 8 8 C 1.81004 * 99.99942 * 359.97270 * 7 6 5 9 9 C 1.53005 * 109.46997 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.47214 * 300.00185 * 9 8 7 11 11 C 1.53002 * 109.46987 * 60.00175 * 9 8 7 12 12 C 1.50699 * 109.46749 * 179.97438 * 9 8 7 13 13 H 1.08001 * 120.00086 * 0.02562 * 12 9 8 14 14 C 1.37877 * 119.99809 * 179.97438 * 12 9 8 15 15 N 1.31520 * 119.99859 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 120.00093 * 180.02562 * 14 12 9 17 17 H 1.48497 * 109.46702 * 90.00411 * 16 14 12 18 18 H 1.48497 * 109.46986 * 210.00216 * 16 14 12 19 19 H 1.48496 * 109.46828 * 330.00109 * 16 14 12 20 20 N 1.29758 * 110.09637 * 359.81394 * 6 5 4 21 21 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 24 24 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 25 25 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 26 26 H 1.08000 * 125.94511 * 359.97438 * 4 3 2 27 27 H 1.08999 * 109.47215 * 299.99831 * 8 7 6 28 28 H 1.09004 * 109.47061 * 60.00060 * 8 7 6 29 29 H 1.09003 * 109.46851 * 59.99880 * 10 9 8 30 30 H 1.08991 * 109.46974 * 179.97438 * 10 9 8 31 31 H 1.09004 * 109.47085 * 299.99990 * 10 9 8 32 32 H 1.09005 * 109.46979 * 59.99778 * 11 9 8 33 33 H 1.08995 * 109.46794 * 179.97438 * 11 9 8 34 34 H 1.08994 * 109.47060 * 300.00018 * 11 9 8 35 35 H 0.97006 * 119.99834 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8752 1.8870 0.9219 5 16 3.2075 3.5776 0.5550 6 6 2.1705 3.4981 -0.8019 7 16 1.8330 4.8386 -1.8945 8 6 2.8525 6.1272 -1.1353 9 6 2.7164 7.4235 -1.9366 10 6 3.1823 7.1855 -3.3745 11 6 1.2525 7.8684 -1.9419 12 6 3.5648 8.4964 -1.3041 13 1 4.1435 8.2757 -0.4194 14 6 3.6030 9.7595 -1.8556 15 7 2.8986 10.0281 -2.9333 16 14 4.6551 11.0894 -1.0721 17 1 6.0154 11.0588 -1.6669 18 1 4.0376 12.4175 -1.3169 19 1 4.7486 10.8490 0.3903 20 7 1.6687 2.3064 -0.9103 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 3.2842 1.3254 1.7488 27 1 2.5209 6.2964 -0.1108 28 1 3.8955 5.8104 -1.1319 29 1 2.5683 6.4095 -3.8316 30 1 3.0849 8.1088 -3.9454 31 1 4.2252 6.8685 -3.3707 32 1 0.9206 8.0379 -0.9176 33 1 1.1556 8.7921 -2.5124 34 1 0.6386 7.0925 -2.3991 35 1 2.9258 10.9166 -3.3216 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865387146.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:09 Heat of formation + Delta-G solvation = 8.590398 kcal Electronic energy + Delta-G solvation = -16204.916342 eV Core-core repulsion = 13647.801766 eV Total energy + Delta-G solvation = -2557.114576 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.73559 -37.93301 -34.43017 -33.56203 -30.65094 -28.41931 -27.61589 -27.17730 -26.33018 -24.36433 -21.28669 -20.30163 -19.35150 -17.98793 -17.57338 -16.69852 -16.17439 -15.97578 -15.32592 -15.11882 -14.78586 -14.67417 -14.45967 -13.93236 -13.53572 -13.27213 -13.19079 -12.79105 -12.68036 -12.58437 -12.27822 -12.18249 -12.10621 -11.86568 -11.74372 -11.50064 -11.36118 -10.79301 -10.76929 -10.41785 -10.40022 -10.13445 -8.51514 -8.01580 -6.19233 -0.39739 0.12128 0.21714 0.77689 1.45165 1.46861 1.52076 1.56296 1.71330 2.46964 3.22392 3.46693 4.08254 4.13442 4.19033 4.28809 4.39816 4.56322 4.64186 4.68133 4.87576 5.00415 5.01641 5.12956 5.14940 5.17263 5.20917 5.41347 5.42097 5.61783 5.66839 6.06244 6.16397 6.38346 6.62614 6.84797 7.48973 8.97756 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.039477 B = 0.004421 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.095685 B = 6331.539672 C = 6785.161263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.044 4.044 3 C 0.061 3.939 4 C -0.260 4.260 5 S 0.133 5.867 6 C 0.001 3.999 7 S -0.011 6.011 8 C -0.087 4.087 9 C 0.076 3.924 10 C -0.127 4.127 11 C -0.127 4.127 12 C -0.524 4.524 13 H 0.056 0.944 14 C 0.027 3.973 15 N -0.903 5.903 16 Si 0.949 3.051 17 H -0.279 1.279 18 H -0.287 1.287 19 H -0.270 1.270 20 N -0.483 5.483 21 H 0.040 0.960 22 H 0.081 0.919 23 H 0.048 0.952 24 H 0.109 0.891 25 H 0.082 0.918 26 H 0.211 0.789 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.031 0.969 30 H 0.064 0.936 31 H 0.027 0.973 32 H 0.027 0.973 33 H 0.064 0.936 34 H 0.031 0.969 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.607 -16.070 7.445 17.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.084 4.084 3 C -0.073 4.073 4 C -0.402 4.402 5 S 0.384 5.616 6 C -0.384 4.384 7 S 0.223 5.777 8 C -0.236 4.236 9 C 0.075 3.925 10 C -0.185 4.185 11 C -0.185 4.185 12 C -0.563 4.563 13 H 0.074 0.926 14 C -0.173 4.173 15 N -0.541 5.541 16 Si 0.776 3.224 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.195 1.195 20 N -0.203 5.203 21 H 0.059 0.941 22 H 0.100 0.900 23 H 0.067 0.933 24 H 0.127 0.873 25 H 0.101 0.899 26 H 0.228 0.772 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.050 0.950 30 H 0.083 0.917 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.082 0.918 34 H 0.050 0.950 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.113 -15.127 6.320 16.432 hybrid contribution 0.983 0.186 1.208 1.569 sum -0.129 -14.941 7.528 16.731 Atomic orbital electron populations 1.21646 0.94387 1.02570 1.01330 1.20273 0.96579 0.87032 1.04474 1.20908 0.97112 0.98397 0.90922 1.27113 1.07974 0.97172 1.07970 1.84180 1.44033 1.10984 1.22451 1.28894 1.03563 1.01685 1.04286 1.85868 1.59348 0.98808 1.33659 1.24085 1.00395 0.96537 1.02622 1.17986 0.94187 0.88326 0.92045 1.21778 0.97966 1.00293 0.98436 1.21776 0.96097 1.01126 0.99469 1.21280 1.27460 0.95449 1.12146 0.92604 1.25523 0.96432 1.00053 0.95307 1.69942 1.41164 1.21533 1.21459 0.85692 0.78943 0.78747 0.79047 1.20477 1.21233 1.19461 1.66478 1.26179 0.99658 1.27994 0.94115 0.89973 0.93322 0.87303 0.89934 0.77189 0.89954 0.89937 0.95033 0.91742 0.95355 0.95347 0.91750 0.95032 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.81 71.98 0.71 -1.91 16 2 C -0.04 -0.79 6.43 29.85 0.19 -0.60 16 3 C 0.06 1.57 6.07 41.41 0.25 1.83 16 4 C -0.26 -5.91 11.04 66.71 0.74 -5.17 16 5 S 0.13 3.75 21.54 -56.49 -1.22 2.54 16 6 C 0.00 0.02 7.59 130.55 0.99 1.01 16 7 S -0.01 -0.42 19.36 -56.49 -1.09 -1.51 16 8 C -0.09 -3.44 3.57 71.98 0.26 -3.19 16 9 C 0.08 3.54 0.52 -52.92 -0.03 3.51 16 10 C -0.13 -5.88 8.01 71.98 0.58 -5.31 16 11 C -0.13 -5.88 8.01 71.98 0.58 -5.31 16 12 C -0.52 -26.64 8.01 25.60 0.21 -26.43 16 13 H 0.06 2.79 7.74 -2.91 -0.02 2.77 16 14 C 0.03 1.38 5.15 84.65 0.44 1.82 16 15 N -0.90 -48.30 9.35 21.45 0.20 -48.10 16 16 Si 0.95 41.40 29.54 68.60 2.03 43.43 16 17 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 20 N -0.48 -16.10 10.41 -188.53 -1.96 -18.06 16 21 H 0.04 0.95 8.07 -2.39 -0.02 0.93 16 22 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.11 1.27 8.03 -2.39 -0.02 1.25 16 25 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.21 3.03 8.06 -2.91 -0.02 3.01 16 27 H 0.08 3.17 7.97 -2.40 -0.02 3.15 16 28 H 0.08 3.17 7.97 -2.39 -0.02 3.16 16 29 H 0.03 1.34 6.91 -2.39 -0.02 1.33 16 30 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 31 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.06 3.31 6.07 -2.39 -0.01 3.29 16 34 H 0.03 1.34 6.91 -2.39 -0.02 1.33 16 35 H 0.26 13.43 8.31 -92.70 -0.77 12.66 16 Total: -1.00 -57.16 308.56 3.92 -53.24 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: 1.07 Total: 8.22 kcal Atomic # 6 Polarization: -44.65 SS G_CDS: 4.90 Total: -39.75 kcal Atomic # 7 Polarization: -64.40 SS G_CDS: -1.76 Total: -66.16 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Atomic # 16 Polarization: 3.33 SS G_CDS: -2.31 Total: 1.02 kcal Total: -57.16 3.92 -53.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865387146.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.831 kcal (2) G-P(sol) polarization free energy of solvation -57.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds