Wall clock time and date at job start Mon Mar 30 2020 00:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86793 * 120.00091 * 2 1 4 4 H 1.48496 * 109.47193 * 239.99812 * 3 2 1 5 5 H 1.48504 * 109.47093 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47471 * 119.99358 * 3 2 1 7 7 C 1.40030 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99872 * 170.11928 * 7 2 1 9 9 C 1.41545 * 120.00380 * 350.11000 * 7 2 1 10 10 C 1.41166 * 120.99520 * 153.79198 * 9 7 2 11 11 C 1.36593 * 119.12300 * 180.02562 * 10 9 7 12 12 N 1.32067 * 121.26052 * 0.02946 * 11 10 9 13 13 C 1.32491 * 122.22863 * 359.65013 * 12 11 10 14 14 N 1.39459 * 119.64767 * 180.32160 * 13 12 11 15 15 C 1.34779 * 120.00044 * 5.67496 * 14 13 12 16 16 O 1.21579 * 119.99806 * 5.06405 * 15 14 13 17 17 N 1.34777 * 120.00327 * 185.06276 * 15 14 13 18 18 C 1.46492 * 120.00266 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.47338 * 179.97438 * 18 17 15 20 20 F 1.39901 * 109.46906 * 300.00104 * 19 18 17 21 21 F 1.39906 * 109.46970 * 59.99735 * 19 18 17 22 22 C 1.38641 * 120.70401 * 0.64055 * 13 12 11 23 23 H 0.96998 * 120.00044 * 0.02562 * 1 2 3 24 24 H 1.07996 * 120.43849 * 0.02562 * 10 9 7 25 25 H 1.08004 * 119.36692 * 180.02562 * 11 10 9 26 26 H 0.96997 * 120.00040 * 185.67782 * 14 13 12 27 27 H 0.97003 * 119.99622 * 359.97438 * 17 15 14 28 28 H 1.09007 * 109.47125 * 299.99201 * 18 17 15 29 29 H 1.08999 * 109.47560 * 59.99640 * 18 17 15 30 30 H 1.08997 * 109.47295 * 179.97438 * 19 18 17 31 31 H 1.07994 * 120.66569 * 179.67892 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6963 -1.2124 5 1 1.2764 2.7464 -0.0006 6 1 3.0951 1.6965 1.2126 7 6 2.0076 -1.2127 0.0005 8 1 3.0755 -1.2197 -0.1600 9 6 1.3156 -2.4294 0.2116 10 6 1.8141 -3.6472 -0.2994 11 6 1.1149 -4.7987 -0.0734 12 7 -0.0143 -4.7917 0.6113 13 6 -0.5257 -3.6800 1.1194 14 7 -1.7186 -3.7357 1.8396 15 6 -2.2852 -4.9275 2.1139 16 8 -1.7112 -5.9566 1.8148 17 7 -3.4880 -4.9783 2.7197 18 6 -4.1036 -6.2737 3.0184 19 6 -5.4542 -6.0511 3.7019 20 9 -5.2632 -5.3401 4.8916 21 9 -6.2923 -5.3213 2.8520 22 6 0.1091 -2.4610 0.9371 23 1 -0.4850 0.8400 -0.0004 24 1 2.7359 -3.6682 -0.8616 25 1 1.4929 -5.7328 -0.4623 26 1 -2.1406 -2.9168 2.1430 27 1 -3.9458 -4.1572 2.9587 28 1 -4.2521 -6.8277 2.0915 29 1 -3.4508 -6.8421 3.6809 30 1 -5.9124 -7.0149 3.9237 31 1 -0.3109 -1.5545 1.3470 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871725086.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:45 Heat of formation + Delta-G solvation = -93.823998 kcal Electronic energy + Delta-G solvation = -19941.060523 eV Core-core repulsion = 16279.371325 eV Total energy + Delta-G solvation = -3661.689199 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.22661 -47.21988 -39.81870 -38.06908 -34.89458 -34.16405 -33.74283 -30.54098 -29.85292 -28.08838 -25.99622 -23.42227 -21.96391 -21.58763 -20.24043 -18.47983 -17.83427 -17.62011 -17.42747 -16.56412 -15.65126 -15.33301 -15.15617 -14.60415 -14.20510 -14.17205 -14.13178 -13.59085 -13.50850 -13.21970 -12.85844 -12.65107 -12.58453 -12.23059 -11.43302 -11.33195 -11.19826 -10.90725 -10.30347 -10.15042 -9.78520 -9.66522 -9.38895 -9.01291 -7.97689 -7.73950 -7.03851 -6.74504 -4.62846 2.68488 2.81719 2.83282 3.01283 3.04240 3.24814 3.46546 3.78619 3.85771 3.91122 4.34527 4.36128 4.63874 4.71447 5.36449 5.37691 5.69270 5.92243 6.43430 6.52631 6.60373 6.79565 6.94515 7.13382 7.20613 7.41429 7.48313 7.86594 8.08973 8.32418 8.45510 8.72597 8.76051 9.09393 9.71163 10.09930 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.026484 B = 0.004135 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.006252 B = 6769.415854 C = 7597.256461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.076 3.924 3 Si 0.915 3.085 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.454 4.454 8 H 0.081 0.919 9 C 0.143 3.857 10 C -0.282 4.282 11 C 0.119 3.881 12 N -0.554 5.554 13 C 0.353 3.647 14 N -0.665 5.665 15 C 0.696 3.304 16 O -0.533 6.533 17 N -0.754 5.754 18 C 0.094 3.906 19 C 0.254 3.746 20 F -0.202 7.202 21 F -0.202 7.202 22 C -0.242 4.242 23 H 0.281 0.719 24 H 0.102 0.898 25 H 0.123 0.877 26 H 0.406 0.594 27 H 0.397 0.603 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.126 0.874 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.812 -5.013 6.630 12.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.143 4.143 3 Si 0.740 3.260 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.486 4.486 8 H 0.099 0.901 9 C 0.135 3.865 10 C -0.306 4.306 11 C -0.035 4.035 12 N -0.273 5.273 13 C 0.127 3.873 14 N -0.313 5.313 15 C 0.396 3.604 16 O -0.404 6.404 17 N -0.414 5.414 18 C -0.032 4.032 19 C 0.200 3.800 20 F -0.184 7.184 21 F -0.183 7.183 22 C -0.268 4.268 23 H 0.092 0.908 24 H 0.120 0.880 25 H 0.140 0.860 26 H 0.240 0.760 27 H 0.230 0.770 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.143 0.857 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.985 -6.634 6.486 13.630 hybrid contribution 0.206 2.532 0.086 2.542 sum -9.779 -4.102 6.573 12.476 Atomic orbital electron populations 1.69736 1.07578 1.29293 1.35542 1.25947 0.94875 1.01435 0.92001 0.86251 0.79978 0.79780 0.80037 1.18908 1.20270 1.18776 1.19558 0.95845 0.90031 1.43160 0.90067 1.17572 0.90292 0.92276 0.86372 1.21691 1.04226 0.94500 1.10181 1.21466 0.90592 0.96581 0.94843 1.67156 1.14850 1.28183 1.17104 1.17958 0.85670 0.90931 0.92744 1.42513 1.24347 1.07378 1.57048 1.15975 0.80490 0.84897 0.79077 1.91012 1.62145 1.31957 1.55279 1.44941 1.21082 1.08181 1.67161 1.22222 0.91453 0.87382 1.02155 1.22298 0.90611 0.90985 0.76088 1.93015 1.95855 1.81534 1.47988 1.93021 1.73396 1.80632 1.71292 1.21628 1.01082 0.95384 1.08674 0.90753 0.87984 0.85990 0.75965 0.76952 0.88601 0.88666 0.85723 0.84929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.59 10.70 55.55 0.59 -18.99 16 2 C 0.08 1.82 5.31 -17.34 -0.09 1.73 16 3 Si 0.92 17.97 29.57 -169.99 -5.03 12.94 16 4 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.28 -5.31 7.11 56.52 0.40 -4.90 16 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.45 -11.69 9.14 -37.65 -0.34 -12.04 16 8 H 0.08 1.99 7.87 -52.49 -0.41 1.58 16 9 C 0.14 3.78 5.60 -106.55 -0.60 3.19 16 10 C -0.28 -6.95 9.85 -39.07 -0.38 -7.34 16 11 C 0.12 2.88 11.10 -18.04 -0.20 2.68 16 12 N -0.55 -14.34 7.90 -12.75 -0.10 -14.44 16 13 C 0.35 8.68 7.41 -154.68 -1.15 7.53 16 14 N -0.67 -13.34 5.40 -15.86 -0.09 -13.42 16 15 C 0.70 13.47 8.51 -86.92 -0.74 12.73 16 16 O -0.53 -12.45 14.64 5.30 0.08 -12.37 16 17 N -0.75 -10.46 5.42 -65.23 -0.35 -10.81 16 18 C 0.09 1.00 5.91 -4.04 -0.02 0.97 16 19 C 0.25 2.03 5.42 37.16 0.20 2.23 16 20 F -0.20 -2.03 17.20 2.25 0.04 -1.99 16 21 F -0.20 -2.07 17.20 2.25 0.04 -2.03 16 22 C -0.24 -6.17 8.62 -38.46 -0.33 -6.51 16 23 H 0.28 6.30 8.29 -40.82 -0.34 5.96 16 24 H 0.10 2.30 8.06 -52.49 -0.42 1.87 16 25 H 0.12 2.58 8.06 -52.48 -0.42 2.16 16 26 H 0.41 6.72 8.71 -40.82 -0.36 6.37 16 27 H 0.40 4.70 8.38 -40.82 -0.34 4.36 16 28 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.13 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.13 3.36 6.11 -52.49 -0.32 3.04 16 LS Contribution 286.10 15.07 4.31 4.31 Total: -1.00 -32.61 286.10 -6.84 -39.45 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -2.68 Total: 12.18 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -3.66 Total: 5.18 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: 0.05 Total: -57.67 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.08 Total: -12.37 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.08 Total: -4.02 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.61 -6.84 -39.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871725086.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.373 kcal (2) G-P(sol) polarization free energy of solvation -32.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds