Wall clock time and date at job start Mon Mar 30 2020 00:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86793 * 120.00091 * 2 1 4 4 H 1.48496 * 109.47193 * 239.99812 * 3 2 1 5 5 H 1.48504 * 109.47093 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47471 * 119.99358 * 3 2 1 7 7 C 1.40030 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99872 * 170.11928 * 7 2 1 9 9 C 1.41545 * 120.00380 * 350.11000 * 7 2 1 10 10 C 1.41166 * 120.99520 * 153.79198 * 9 7 2 11 11 C 1.36593 * 119.12300 * 180.02562 * 10 9 7 12 12 N 1.32067 * 121.26052 * 0.02946 * 11 10 9 13 13 C 1.32491 * 122.22863 * 359.65013 * 12 11 10 14 14 N 1.39459 * 119.64767 * 180.32160 * 13 12 11 15 15 C 1.34779 * 120.00044 * 5.67496 * 14 13 12 16 16 O 1.21579 * 119.99806 * 5.06405 * 15 14 13 17 17 N 1.34777 * 120.00327 * 185.06276 * 15 14 13 18 18 C 1.46492 * 120.00266 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.47338 * 179.97438 * 18 17 15 20 20 F 1.39901 * 109.46906 * 300.00104 * 19 18 17 21 21 F 1.39906 * 109.46970 * 59.99735 * 19 18 17 22 22 C 1.38641 * 120.70401 * 0.64055 * 13 12 11 23 23 H 0.96998 * 120.00044 * 0.02562 * 1 2 3 24 24 H 1.07996 * 120.43849 * 0.02562 * 10 9 7 25 25 H 1.08004 * 119.36692 * 180.02562 * 11 10 9 26 26 H 0.96997 * 120.00040 * 185.67782 * 14 13 12 27 27 H 0.97003 * 119.99622 * 359.97438 * 17 15 14 28 28 H 1.09007 * 109.47125 * 299.99201 * 18 17 15 29 29 H 1.08999 * 109.47560 * 59.99640 * 18 17 15 30 30 H 1.08997 * 109.47295 * 179.97438 * 19 18 17 31 31 H 1.07994 * 120.66569 * 179.67892 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6963 -1.2124 5 1 1.2764 2.7464 -0.0006 6 1 3.0951 1.6965 1.2126 7 6 2.0076 -1.2127 0.0005 8 1 3.0755 -1.2197 -0.1600 9 6 1.3156 -2.4294 0.2116 10 6 1.8141 -3.6472 -0.2994 11 6 1.1149 -4.7987 -0.0734 12 7 -0.0143 -4.7917 0.6113 13 6 -0.5257 -3.6800 1.1194 14 7 -1.7186 -3.7357 1.8396 15 6 -2.2852 -4.9275 2.1139 16 8 -1.7112 -5.9566 1.8148 17 7 -3.4880 -4.9783 2.7197 18 6 -4.1036 -6.2737 3.0184 19 6 -5.4542 -6.0511 3.7019 20 9 -5.2632 -5.3401 4.8916 21 9 -6.2923 -5.3213 2.8520 22 6 0.1091 -2.4610 0.9371 23 1 -0.4850 0.8400 -0.0004 24 1 2.7359 -3.6682 -0.8616 25 1 1.4929 -5.7328 -0.4623 26 1 -2.1406 -2.9168 2.1430 27 1 -3.9458 -4.1572 2.9587 28 1 -4.2521 -6.8277 2.0915 29 1 -3.4508 -6.8421 3.6809 30 1 -5.9124 -7.0149 3.9237 31 1 -0.3109 -1.5545 1.3470 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871725086.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:45 Heat of formation + Delta-G solvation = -115.950333 kcal Electronic energy + Delta-G solvation = -19942.019993 eV Core-core repulsion = 16279.371325 eV Total energy + Delta-G solvation = -3662.648668 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.94738 -47.95116 -41.43014 -39.83013 -36.35306 -35.76552 -35.51324 -32.43128 -31.17053 -29.57447 -27.90819 -24.50369 -23.79973 -23.06091 -21.83613 -19.91595 -19.47252 -18.40381 -18.35640 -17.92369 -17.06497 -16.89948 -16.56842 -16.04282 -15.98603 -15.77110 -15.02108 -14.99390 -14.66657 -14.54149 -14.32709 -14.30581 -13.80045 -13.40050 -13.16464 -12.86159 -12.67719 -12.08953 -12.05910 -11.91007 -11.53138 -11.35781 -11.17908 -10.26738 -9.91783 -9.64194 -8.86737 -8.57496 -6.57615 0.82569 1.01939 1.42202 1.50425 1.53528 1.58972 2.19945 2.22279 2.75480 2.84937 3.06813 3.31412 3.61568 3.76494 3.94914 4.13705 4.53909 4.57055 4.72469 4.83393 4.92987 5.10023 5.24882 5.27307 5.49727 5.64487 5.74526 5.97192 6.25338 6.55946 6.78443 6.83201 6.88920 7.52872 7.86545 8.29708 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.026484 B = 0.004135 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.006252 B = 6769.415854 C = 7597.256461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.037 3.963 3 Si 0.990 3.010 4 H -0.260 1.260 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.484 4.484 8 H 0.085 0.915 9 C 0.114 3.886 10 C -0.295 4.295 11 C 0.113 3.887 12 N -0.578 5.578 13 C 0.350 3.650 14 N -0.661 5.661 15 C 0.694 3.306 16 O -0.575 6.575 17 N -0.737 5.737 18 C 0.084 3.916 19 C 0.262 3.738 20 F -0.213 7.213 21 F -0.214 7.214 22 C -0.260 4.260 23 H 0.291 0.709 24 H 0.117 0.883 25 H 0.150 0.850 26 H 0.420 0.580 27 H 0.408 0.592 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.178 0.822 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.557 -4.527 7.162 13.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.179 4.179 3 Si 0.810 3.190 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.184 1.184 7 C -0.515 4.515 8 H 0.103 0.897 9 C 0.106 3.894 10 C -0.319 4.319 11 C -0.040 4.040 12 N -0.298 5.298 13 C 0.123 3.877 14 N -0.310 5.310 15 C 0.394 3.606 16 O -0.450 6.450 17 N -0.396 5.396 18 C -0.040 4.040 19 C 0.209 3.791 20 F -0.195 7.195 21 F -0.196 7.196 22 C -0.286 4.286 23 H 0.102 0.898 24 H 0.135 0.865 25 H 0.167 0.833 26 H 0.257 0.743 27 H 0.244 0.756 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.195 0.805 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.800 -6.144 7.051 14.287 hybrid contribution 0.373 2.341 -0.069 2.371 sum -10.427 -3.804 6.982 13.113 Atomic orbital electron populations 1.69778 1.08937 1.30842 1.34842 1.26820 0.95683 1.04545 0.90870 0.85126 0.78637 0.75131 0.80075 1.18461 1.19074 1.18376 1.19872 0.96275 0.90937 1.44411 0.89733 1.18011 0.91084 0.93366 0.86949 1.21882 1.05015 0.94294 1.10689 1.21933 0.90188 0.97643 0.94201 1.67287 1.15695 1.28727 1.18098 1.18162 0.86665 0.90442 0.92418 1.42425 1.23353 1.08651 1.56543 1.16126 0.81555 0.83873 0.79062 1.90976 1.63666 1.33136 1.57174 1.44818 1.19165 1.10281 1.65311 1.22558 0.92938 0.85731 1.02821 1.22618 0.89024 0.92564 0.74912 1.92997 1.95866 1.82071 1.48564 1.93001 1.73568 1.81221 1.71804 1.21609 1.01635 0.95618 1.09716 0.89786 0.86492 0.83284 0.74318 0.75604 0.88369 0.88149 0.80515 0.85354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.22 10.70 21.84 0.23 -39.98 16 2 C 0.04 1.77 5.31 85.29 0.45 2.22 16 3 Si 0.99 36.02 29.57 68.60 2.03 38.04 16 4 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 5 H -0.27 -9.13 7.11 99.48 0.71 -8.42 16 6 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 7 C -0.48 -25.14 9.14 23.52 0.21 -24.92 16 8 H 0.08 4.17 7.87 -2.91 -0.02 4.15 16 9 C 0.11 6.15 5.60 -21.11 -0.12 6.03 16 10 C -0.29 -14.73 9.85 22.60 0.22 -14.50 16 11 C 0.11 5.54 11.10 84.27 0.94 6.47 16 12 N -0.58 -30.28 7.90 -194.27 -1.53 -31.81 16 13 C 0.35 17.51 7.41 132.76 0.98 18.49 16 14 N -0.66 -26.63 5.40 -322.37 -1.74 -28.37 16 15 C 0.69 26.70 8.51 179.05 1.52 28.23 16 16 O -0.58 -26.98 14.64 -3.97 -0.06 -27.03 16 17 N -0.74 -19.61 5.42 -478.55 -2.59 -22.20 16 18 C 0.08 1.64 5.91 86.38 0.51 2.15 16 19 C 0.26 3.46 5.42 71.98 0.39 3.85 16 20 F -0.21 -3.78 17.20 44.97 0.77 -3.01 16 21 F -0.21 -3.90 17.20 44.97 0.77 -3.12 16 22 C -0.26 -13.56 8.62 23.00 0.20 -13.36 16 23 H 0.29 12.84 8.29 -92.71 -0.77 12.07 16 24 H 0.12 5.30 8.06 -2.91 -0.02 5.27 16 25 H 0.15 6.23 8.06 -2.91 -0.02 6.21 16 26 H 0.42 13.91 8.71 -92.71 -0.81 13.10 16 27 H 0.41 9.10 8.38 -92.71 -0.78 8.32 16 28 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 29 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.18 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.13 6.66 6.11 -2.91 -0.02 6.64 16 Total: -1.00 -70.98 286.10 2.82 -68.16 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: -0.38 Total: 34.67 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 5.31 Total: 14.65 kcal Atomic # 7 Polarization: -116.73 SS G_CDS: -5.63 Total: -122.36 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.06 Total: -27.03 kcal Atomic # 9 Polarization: -7.68 SS G_CDS: 1.55 Total: -6.13 kcal Atomic # 14 Polarization: 36.02 SS G_CDS: 2.03 Total: 38.04 kcal Total: -70.98 2.82 -68.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871725086.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.789 kcal (2) G-P(sol) polarization free energy of solvation -70.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds