Wall clock time and date at job start Mon Mar 30 2020 00:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36013 * 116.99844 * 2 1 4 4 C 1.38559 * 120.06300 * 359.97438 * 3 2 1 5 5 C 1.38240 * 120.01327 * 179.97438 * 4 3 2 6 6 C 1.50701 * 119.93134 * 179.97438 * 5 4 3 7 7 N 1.46901 * 109.46921 * 104.99595 * 6 5 4 8 8 C 1.46906 * 110.99793 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47183 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99585 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00111 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99984 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99870 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47011 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47119 * 120.00029 * 13 11 9 16 16 H 1.48497 * 109.46822 * 239.99957 * 13 11 9 17 17 C 1.38355 * 120.13417 * 0.24897 * 5 4 3 18 18 Cl 1.73597 * 119.94080 * 179.72504 * 17 5 4 19 19 C 1.38337 * 120.11706 * 359.49531 * 17 5 4 20 20 C 1.38563 * 119.98838 * 0.50543 * 19 17 5 21 21 O 1.35996 * 120.06413 * 179.76589 * 20 19 17 22 22 H 1.09003 * 109.47069 * 60.00799 * 1 2 3 23 23 H 1.09004 * 109.46913 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47410 * 300.00272 * 1 2 3 25 25 H 1.08004 * 119.98933 * 359.95546 * 4 3 2 26 26 H 1.09002 * 109.47060 * 224.99776 * 6 5 4 27 27 H 1.09001 * 109.47380 * 344.99864 * 6 5 4 28 28 H 1.00898 * 110.99877 * 56.04636 * 7 6 5 29 29 H 1.08995 * 109.47087 * 299.99901 * 8 7 6 30 30 H 1.09002 * 109.46903 * 59.99922 * 8 7 6 31 31 H 0.97003 * 120.00204 * 179.97438 * 12 11 9 32 32 H 1.08006 * 120.00629 * 180.27277 * 19 17 5 33 33 H 0.96700 * 114.00358 * 269.97551 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2931 2.3748 -0.0005 5 6 1.9217 3.6060 0.0000 6 6 1.1005 4.8695 -0.0012 7 7 1.1326 5.4756 1.3366 8 6 0.3413 6.7128 1.3732 9 6 0.3982 7.3048 2.7579 10 1 0.9651 6.8110 3.5333 11 6 -0.2743 8.4760 3.0351 12 7 -0.9651 9.0769 2.0910 13 14 -0.2043 9.2094 4.7517 14 1 0.6326 8.3474 5.6244 15 1 0.3873 10.5698 4.6850 16 1 -1.5776 9.2936 5.3103 17 6 3.3032 3.6804 -0.0041 18 17 4.0874 5.2292 -0.0107 19 6 4.0608 2.5230 0.0017 20 6 3.4359 1.2862 0.0012 21 8 4.1792 0.1474 0.0021 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 0.2144 2.3192 -0.0017 26 1 1.5126 5.5701 -0.7275 27 1 0.0704 4.6333 -0.2683 28 1 2.0817 5.6449 1.6342 29 1 0.7486 7.4259 0.6566 30 1 -0.6940 6.4896 1.1153 31 1 -1.4385 9.9007 2.2861 32 1 5.1392 2.5832 0.0029 33 1 4.3948 -0.1824 -0.8810 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877482862.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:57 Heat of formation + Delta-G solvation = -64.393023 kcal Electronic energy + Delta-G solvation = -18097.841770 eV Core-core repulsion = 14956.932723 eV Total energy + Delta-G solvation = -3140.909047 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.56318 -38.10114 -37.39966 -36.02848 -34.90860 -32.54276 -30.62143 -29.90588 -27.74865 -26.56639 -24.25537 -22.58316 -21.70066 -21.15120 -18.78478 -17.47259 -16.94469 -16.38950 -16.14433 -15.52184 -14.90871 -14.59005 -14.38031 -14.28048 -14.09392 -13.48210 -12.84742 -12.75249 -12.54659 -12.08873 -11.89647 -11.58597 -11.32902 -11.29515 -10.84390 -10.79001 -10.75636 -10.54091 -10.52301 -9.94801 -9.19922 -8.89714 -8.49128 -8.08429 -7.34292 -6.04009 -4.05645 1.04666 1.11514 2.22883 3.06659 3.31300 3.38220 3.39420 3.44651 4.04913 4.43469 4.63115 4.78728 4.95881 5.02959 5.06598 5.32299 5.34283 5.38145 5.51420 5.59070 5.75674 5.82514 5.98221 6.11553 6.35996 6.49310 7.02259 7.19265 7.39610 7.56779 7.76643 8.09464 8.34470 8.56705 9.03509 9.59297 11.07175 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022753 B = 0.004486 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.294260 B = 6239.910585 C = 6908.012413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.308 6.308 3 C 0.108 3.892 4 C -0.170 4.170 5 C -0.020 4.020 6 C 0.089 3.911 7 N -0.682 5.682 8 C 0.194 3.806 9 C -0.513 4.513 10 H 0.063 0.937 11 C 0.056 3.944 12 N -0.898 5.898 13 Si 0.898 3.102 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.056 4.056 18 Cl -0.058 7.058 19 C -0.097 4.097 20 C 0.074 3.926 21 O -0.482 6.482 22 H 0.057 0.943 23 H 0.100 0.900 24 H 0.061 0.939 25 H 0.143 0.857 26 H 0.041 0.959 27 H 0.077 0.923 28 H 0.333 0.667 29 H -0.011 1.011 30 H 0.029 0.971 31 H 0.261 0.739 32 H 0.144 0.856 33 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.884 -16.417 -8.610 19.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.221 6.221 3 C 0.062 3.938 4 C -0.189 4.189 5 C -0.022 4.022 6 C -0.041 4.041 7 N -0.314 5.314 8 C 0.068 3.932 9 C -0.551 4.551 10 H 0.081 0.919 11 C -0.145 4.145 12 N -0.538 5.538 13 Si 0.726 3.274 14 H -0.196 1.196 15 H -0.211 1.211 16 H -0.210 1.210 17 C -0.084 4.084 18 Cl -0.029 7.029 19 C -0.116 4.116 20 C 0.028 3.972 21 O -0.291 6.291 22 H 0.075 0.925 23 H 0.118 0.882 24 H 0.079 0.921 25 H 0.161 0.839 26 H 0.059 0.941 27 H 0.095 0.905 28 H 0.151 0.849 29 H 0.007 0.993 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.162 0.838 33 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 6.352 -16.637 -7.779 19.433 hybrid contribution 0.357 1.312 -0.102 1.363 sum 6.709 -15.325 -7.881 18.493 Atomic orbital electron populations 1.23142 0.78152 1.04027 1.01928 1.86126 1.21502 1.25968 1.88477 1.19455 0.91627 0.84994 0.97704 1.21017 1.00583 0.90337 1.07004 1.19778 0.91605 0.96023 0.94789 1.20937 0.98334 0.91126 0.93658 1.60829 1.17899 1.32070 1.20585 1.19587 0.92978 0.83769 0.96896 1.21204 1.30864 1.07017 0.96042 0.91885 1.24973 0.95315 0.96831 0.97378 1.69969 1.32572 1.18601 1.32621 0.86430 0.77803 0.78875 0.84268 1.19605 1.21065 1.20987 1.20513 0.92233 0.86997 1.08629 1.98384 1.80266 1.27336 1.96909 1.21018 1.00670 0.89459 1.00452 1.17389 0.86027 0.86095 1.07709 1.84918 1.71789 1.39259 1.33119 0.92453 0.88152 0.92053 0.83944 0.94115 0.90452 0.84899 0.99342 0.95314 0.92963 0.83830 0.76102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.75 10.28 -34.30 -0.35 -4.10 16 3 C 0.11 1.44 6.70 -39.13 -0.26 1.18 16 4 C -0.17 -2.33 8.65 -39.46 -0.34 -2.67 16 5 C -0.02 -0.32 5.42 -104.58 -0.57 -0.88 16 6 C 0.09 1.59 5.24 -4.97 -0.03 1.56 16 7 N -0.68 -14.94 6.48 -116.33 -0.75 -15.69 16 8 C 0.19 5.10 5.44 -4.97 -0.03 5.08 16 9 C -0.51 -14.67 9.32 -34.44 -0.32 -14.99 16 10 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 13 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 14 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 C -0.06 -0.83 6.23 -39.50 -0.25 -1.07 16 18 Cl -0.06 -0.87 26.39 -51.86 -1.37 -2.24 16 19 C -0.10 -1.24 9.76 -39.43 -0.38 -1.63 16 20 C 0.07 0.95 6.72 -39.13 -0.26 0.69 16 21 O -0.48 -5.47 13.29 -34.25 -0.46 -5.93 16 22 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 23 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 25 H 0.14 1.73 6.24 -52.48 -0.33 1.40 16 26 H 0.04 0.73 7.56 -51.93 -0.39 0.34 16 27 H 0.08 1.32 7.95 -51.93 -0.41 0.91 16 28 H 0.33 7.23 7.31 -39.29 -0.29 6.94 16 29 H -0.01 -0.31 8.14 -51.93 -0.42 -0.73 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.14 1.56 8.06 -52.48 -0.42 1.13 16 33 H 0.38 2.44 9.06 45.56 0.41 2.85 16 LS Contribution 301.40 15.07 4.54 4.54 Total: -1.00 -32.45 301.40 -7.26 -39.70 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -3.04 Total: 3.02 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -1.54 Total: -10.04 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: -0.02 Total: -41.78 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -0.81 Total: -10.03 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.37 Total: -2.24 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.45 -7.26 -39.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877482862.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.689 kcal (2) G-P(sol) polarization free energy of solvation -32.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds