Wall clock time and date at job start Mon Mar 30 2020 00:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36013 * 116.99844 * 2 1 4 4 C 1.38559 * 120.06300 * 359.97438 * 3 2 1 5 5 C 1.38240 * 120.01327 * 179.97438 * 4 3 2 6 6 C 1.50701 * 119.93134 * 179.97438 * 5 4 3 7 7 N 1.46901 * 109.46921 * 104.99595 * 6 5 4 8 8 C 1.46906 * 110.99793 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47183 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99585 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00111 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99984 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99870 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47011 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47119 * 120.00029 * 13 11 9 16 16 H 1.48497 * 109.46822 * 239.99957 * 13 11 9 17 17 C 1.38355 * 120.13417 * 0.24897 * 5 4 3 18 18 Cl 1.73597 * 119.94080 * 179.72504 * 17 5 4 19 19 C 1.38337 * 120.11706 * 359.49531 * 17 5 4 20 20 C 1.38563 * 119.98838 * 0.50543 * 19 17 5 21 21 O 1.35996 * 120.06413 * 179.76589 * 20 19 17 22 22 H 1.09003 * 109.47069 * 60.00799 * 1 2 3 23 23 H 1.09004 * 109.46913 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47410 * 300.00272 * 1 2 3 25 25 H 1.08004 * 119.98933 * 359.95546 * 4 3 2 26 26 H 1.09002 * 109.47060 * 224.99776 * 6 5 4 27 27 H 1.09001 * 109.47380 * 344.99864 * 6 5 4 28 28 H 1.00898 * 110.99877 * 56.04636 * 7 6 5 29 29 H 1.08995 * 109.47087 * 299.99901 * 8 7 6 30 30 H 1.09002 * 109.46903 * 59.99922 * 8 7 6 31 31 H 0.97003 * 120.00204 * 179.97438 * 12 11 9 32 32 H 1.08006 * 120.00629 * 180.27277 * 19 17 5 33 33 H 0.96700 * 114.00358 * 269.97551 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2931 2.3748 -0.0005 5 6 1.9217 3.6060 0.0000 6 6 1.1005 4.8695 -0.0012 7 7 1.1326 5.4756 1.3366 8 6 0.3413 6.7128 1.3732 9 6 0.3982 7.3048 2.7579 10 1 0.9651 6.8110 3.5333 11 6 -0.2743 8.4760 3.0351 12 7 -0.9651 9.0769 2.0910 13 14 -0.2043 9.2094 4.7517 14 1 0.6326 8.3474 5.6244 15 1 0.3873 10.5698 4.6850 16 1 -1.5776 9.2936 5.3103 17 6 3.3032 3.6804 -0.0041 18 17 4.0874 5.2292 -0.0107 19 6 4.0608 2.5230 0.0017 20 6 3.4359 1.2862 0.0012 21 8 4.1792 0.1474 0.0021 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 0.2144 2.3192 -0.0017 26 1 1.5126 5.5701 -0.7275 27 1 0.0704 4.6333 -0.2683 28 1 2.0817 5.6449 1.6342 29 1 0.7486 7.4259 0.6566 30 1 -0.6940 6.4896 1.1153 31 1 -1.4385 9.9007 2.2861 32 1 5.1392 2.5832 0.0029 33 1 4.3948 -0.1824 -0.8810 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877482862.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:57 Heat of formation + Delta-G solvation = -88.108892 kcal Electronic energy + Delta-G solvation = -18098.870167 eV Core-core repulsion = 14956.932723 eV Total energy + Delta-G solvation = -3141.937444 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.55725 -39.09911 -38.44086 -37.26522 -36.48521 -34.54667 -31.92284 -31.00105 -29.00017 -27.97137 -25.80756 -23.66599 -23.46294 -22.46952 -19.73231 -18.79890 -18.21765 -17.93818 -17.12395 -16.79385 -16.42644 -16.15997 -15.62213 -15.35041 -15.18401 -15.05322 -14.38930 -13.98880 -13.84150 -13.60073 -13.22748 -12.87292 -12.73555 -12.66254 -12.59795 -12.41339 -12.11143 -11.76583 -11.71200 -11.61816 -11.28246 -10.67425 -9.97082 -9.21993 -9.07377 -8.23022 -6.33744 -0.02253 0.07204 1.10594 1.41134 1.41502 1.55677 2.19553 2.34907 2.41500 3.10551 3.10797 3.51926 3.67998 3.86463 3.95586 4.28101 4.36825 4.39186 4.46288 4.59184 4.71895 4.74093 4.84154 4.88003 5.06487 5.25096 5.26088 5.40490 5.59901 5.99687 6.16488 6.38678 6.64691 6.81894 6.85614 7.36883 8.88663 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022753 B = 0.004486 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.294260 B = 6239.910585 C = 6908.012413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.316 6.316 3 C 0.106 3.894 4 C -0.169 4.169 5 C -0.040 4.040 6 C 0.093 3.907 7 N -0.682 5.682 8 C 0.209 3.791 9 C -0.535 4.535 10 H 0.061 0.939 11 C 0.005 3.995 12 N -0.932 5.932 13 Si 0.971 3.029 14 H -0.265 1.265 15 H -0.277 1.277 16 H -0.276 1.276 17 C -0.064 4.064 18 Cl -0.068 7.068 19 C -0.093 4.093 20 C 0.081 3.919 21 O -0.489 6.489 22 H 0.069 0.931 23 H 0.126 0.874 24 H 0.058 0.942 25 H 0.155 0.845 26 H 0.037 0.963 27 H 0.081 0.919 28 H 0.334 0.666 29 H -0.036 1.036 30 H 0.007 0.993 31 H 0.266 0.734 32 H 0.164 0.836 33 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.364 -17.823 -8.034 20.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.229 6.229 3 C 0.059 3.941 4 C -0.188 4.188 5 C -0.041 4.041 6 C -0.036 4.036 7 N -0.313 5.313 8 C 0.082 3.918 9 C -0.574 4.574 10 H 0.079 0.921 11 C -0.194 4.194 12 N -0.572 5.572 13 Si 0.795 3.205 14 H -0.189 1.189 15 H -0.203 1.203 16 H -0.202 1.202 17 C -0.092 4.092 18 Cl -0.040 7.040 19 C -0.112 4.112 20 C 0.035 3.965 21 O -0.301 6.301 22 H 0.087 0.913 23 H 0.144 0.856 24 H 0.076 0.924 25 H 0.172 0.828 26 H 0.055 0.945 27 H 0.100 0.900 28 H 0.152 0.848 29 H -0.019 1.019 30 H 0.025 0.975 31 H 0.074 0.926 32 H 0.181 0.819 33 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 6.843 -18.077 -7.231 20.637 hybrid contribution 0.214 1.589 -0.358 1.643 sum 7.057 -16.487 -7.589 19.474 Atomic orbital electron populations 1.23427 0.76364 1.05928 1.02344 1.86125 1.23353 1.25264 1.88201 1.19540 0.91969 0.85225 0.97360 1.21100 1.01316 0.89903 1.06474 1.19550 0.91771 0.95344 0.97444 1.20890 0.99276 0.92093 0.91342 1.60696 1.17497 1.29633 1.23465 1.19229 0.92235 0.84913 0.95438 1.21531 1.31229 1.07719 0.96891 0.92107 1.25891 0.94624 0.97133 1.01707 1.70082 1.33147 1.19103 1.34867 0.85314 0.78128 0.78080 0.78970 1.18893 1.20258 1.20181 1.20603 0.92089 0.87152 1.09330 1.98378 1.80357 1.28225 1.97001 1.21171 1.01567 0.88763 0.99727 1.17476 0.86156 0.86530 1.06315 1.84854 1.71401 1.38529 1.35299 0.91284 0.85614 0.92372 0.82778 0.94543 0.90032 0.84782 1.01872 0.97492 0.92557 0.81863 0.73322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.31 16 2 O -0.32 -7.00 10.28 -79.81 -0.82 -7.82 16 3 C 0.11 2.61 6.70 22.56 0.15 2.76 16 4 C -0.17 -4.43 8.65 22.35 0.19 -4.23 16 5 C -0.04 -1.21 5.42 -19.84 -0.11 -1.32 16 6 C 0.09 3.36 5.24 85.56 0.45 3.81 16 7 N -0.68 -30.37 6.48 -521.96 -3.38 -33.76 16 8 C 0.21 11.35 5.44 85.56 0.47 11.81 16 9 C -0.54 -31.04 9.32 25.60 0.24 -30.80 16 10 H 0.06 3.48 7.81 -2.91 -0.02 3.45 16 11 C 0.00 0.28 5.46 84.65 0.46 0.74 16 12 N -0.93 -56.29 13.29 21.45 0.28 -56.00 16 13 Si 0.97 44.69 29.54 68.60 2.03 46.72 16 14 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 15 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 16 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 17 C -0.06 -1.84 6.23 22.32 0.14 -1.70 16 18 Cl -0.07 -2.05 26.39 -2.72 -0.07 -2.13 16 19 C -0.09 -2.23 9.76 22.37 0.22 -2.01 16 20 C 0.08 1.92 6.72 22.57 0.15 2.07 16 21 O -0.49 -9.74 13.29 -79.62 -1.06 -10.80 16 22 H 0.07 0.88 7.66 -2.39 -0.02 0.86 16 23 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.06 0.92 7.66 -2.39 -0.02 0.90 16 25 H 0.15 3.55 6.24 -2.91 -0.02 3.53 16 26 H 0.04 1.35 7.56 -2.39 -0.02 1.33 16 27 H 0.08 2.83 7.95 -2.39 -0.02 2.81 16 28 H 0.33 14.73 7.31 -89.70 -0.66 14.07 16 29 H -0.04 -2.11 8.14 -2.39 -0.02 -2.13 16 30 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 32 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 33 H 0.41 3.94 9.06 -74.06 -0.67 3.26 16 Total: -1.00 -68.95 301.40 0.28 -68.67 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -0.17 Total: 12.66 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: 3.47 Total: -17.56 kcal Atomic # 7 Polarization: -86.66 SS G_CDS: -3.10 Total: -89.76 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -1.88 Total: -18.61 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 17 Polarization: -2.05 SS G_CDS: -0.07 Total: -2.13 kcal Total: -68.95 0.28 -68.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877482862.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.434 kcal (2) G-P(sol) polarization free energy of solvation -68.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds