Wall clock time and date at job start Mon Mar 30 2020 01:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.46944 * 2 1 4 4 C 1.52996 * 109.47263 * 239.99960 * 2 1 3 5 5 C 1.50691 * 109.47139 * 174.99968 * 4 2 1 6 6 C 1.38251 * 119.98419 * 265.30063 * 5 4 2 7 7 C 1.38180 * 120.04187 * 180.25765 * 6 5 4 8 8 C 1.38490 * 119.99785 * 359.44103 * 7 6 5 9 9 F 1.35097 * 120.01901 * 180.25502 * 8 7 6 10 10 C 1.38416 * 119.96564 * 0.28068 * 8 7 6 11 11 C 1.38342 * 119.98208 * 85.00284 * 5 4 2 12 12 Cl 1.73602 * 120.00040 * 0.04112 * 11 5 4 13 13 N 1.46896 * 109.46748 * 119.99904 * 2 1 3 14 14 C 1.46900 * 111.00399 * 275.00102 * 13 2 1 15 15 C 1.50701 * 109.47184 * 180.02562 * 14 13 2 16 16 H 1.07993 * 120.00045 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99558 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00540 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99914 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46934 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47133 * 119.99862 * 19 17 15 22 22 H 1.48499 * 109.47726 * 240.00119 * 19 17 15 23 23 H 1.09001 * 109.46944 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.46935 * 299.99768 * 1 2 3 25 25 H 1.09002 * 109.46597 * 59.99908 * 1 2 3 26 26 H 1.09006 * 109.46970 * 55.00182 * 4 2 1 27 27 H 1.09005 * 109.47318 * 295.00574 * 4 2 1 28 28 H 1.08002 * 119.98035 * 359.97438 * 6 5 4 29 29 H 1.08002 * 120.00445 * 179.72636 * 7 6 5 30 30 H 1.08000 * 120.02315 * 179.97438 * 10 8 7 31 31 H 1.00904 * 111.00504 * 38.95689 * 13 2 1 32 32 H 1.09003 * 109.46832 * 300.00224 * 14 13 2 33 33 H 1.09003 * 109.47031 * 60.00050 * 14 13 2 34 34 H 0.97000 * 120.00244 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 6 4.1326 0.3947 -2.0497 7 6 5.5096 0.4901 -2.1131 8 6 6.2989 -0.4189 -1.4285 9 9 7.6452 -0.3229 -1.4860 10 6 5.7077 -1.4263 -0.6858 11 6 4.3289 -1.5238 -0.6283 12 17 3.5863 -2.7872 0.3024 13 7 2.0197 -0.6925 1.1994 14 6 2.0824 0.2225 2.3469 15 6 2.5884 -0.5216 3.5558 16 1 2.8379 -1.5695 3.4794 17 6 2.7327 0.1355 4.7592 18 7 2.4283 1.4115 4.8524 19 14 3.3592 -0.7870 6.2579 20 1 3.6277 -2.2011 5.8922 21 1 4.6131 -0.1544 6.7401 22 1 2.3355 -0.7390 7.3325 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 1.6055 -0.2617 -2.1370 27 1 1.7517 -1.7715 -1.2056 28 1 3.5173 1.1064 -2.5801 29 1 5.9704 1.2764 -2.6927 30 1 6.3223 -2.1359 -0.1520 31 1 1.4496 -1.4979 1.4101 32 1 2.7588 1.0462 2.1183 33 1 1.0870 0.6163 2.5525 34 1 2.5302 1.8739 5.6990 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877484130.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:27 Heat of formation + Delta-G solvation = -54.243668 kcal Electronic energy + Delta-G solvation = -18564.140397 eV Core-core repulsion = 15436.044249 eV Total energy + Delta-G solvation = -3128.096148 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.91098 -40.32722 -37.92475 -37.07258 -35.04605 -33.09828 -31.80169 -30.97657 -27.83011 -27.13935 -24.05514 -23.80758 -22.76324 -21.39890 -18.76242 -18.43993 -17.62419 -16.87295 -16.63234 -16.54745 -15.72991 -15.62628 -15.24157 -15.08519 -14.66745 -14.51053 -14.14322 -13.93075 -13.45496 -13.26715 -13.02326 -12.84962 -12.66955 -12.38538 -12.23935 -12.15017 -12.07944 -11.84126 -11.72383 -11.30518 -11.17910 -10.62518 -9.82808 -9.40321 -8.76874 -8.18033 -6.26086 0.13850 0.19926 1.38428 1.39928 1.41006 1.52581 2.41009 2.55117 3.15724 3.31653 3.65501 3.85143 3.88683 4.02346 4.23819 4.30494 4.41563 4.57355 4.64099 4.77976 4.97130 4.98406 5.02151 5.06320 5.18978 5.21195 5.23402 5.38496 5.48578 5.53017 5.70319 5.86454 6.12937 6.60273 6.87060 7.03184 7.44289 8.93383 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.015923 B = 0.006506 C = 0.005584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.045450 B = 4302.461010 C = 5013.515837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.082 3.918 3 H 0.055 0.945 4 C -0.063 4.063 5 C -0.077 4.077 6 C -0.079 4.079 7 C -0.152 4.152 8 C 0.084 3.916 9 F -0.145 7.145 10 C -0.168 4.168 11 C 0.009 3.991 12 Cl -0.045 7.045 13 N -0.666 5.666 14 C 0.217 3.783 15 C -0.518 4.518 16 H 0.062 0.938 17 C 0.001 3.999 18 N -0.935 5.935 19 Si 0.960 3.040 20 H -0.264 1.264 21 H -0.283 1.283 22 H -0.278 1.278 23 H 0.063 0.937 24 H 0.030 0.970 25 H 0.081 0.919 26 H 0.107 0.893 27 H 0.080 0.920 28 H 0.170 0.830 29 H 0.162 0.838 30 H 0.140 0.860 31 H 0.331 0.669 32 H -0.010 1.010 33 H -0.041 1.041 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.320 -4.295 -16.695 17.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.028 4.028 3 H 0.073 0.927 4 C -0.100 4.100 5 C -0.078 4.078 6 C -0.097 4.097 7 C -0.171 4.171 8 C 0.065 3.935 9 F -0.124 7.124 10 C -0.188 4.188 11 C -0.018 4.018 12 Cl -0.016 7.016 13 N -0.296 5.296 14 C 0.089 3.911 15 C -0.556 4.556 16 H 0.080 0.920 17 C -0.197 4.197 18 N -0.576 5.576 19 Si 0.786 3.214 20 H -0.188 1.188 21 H -0.209 1.209 22 H -0.204 1.204 23 H 0.082 0.918 24 H 0.049 0.951 25 H 0.100 0.900 26 H 0.125 0.875 27 H 0.098 0.902 28 H 0.187 0.813 29 H 0.180 0.820 30 H 0.157 0.843 31 H 0.149 0.851 32 H 0.008 0.992 33 H -0.024 1.024 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.970 -4.198 -16.653 17.286 hybrid contribution -0.237 -0.094 1.673 1.693 sum 1.733 -4.292 -14.979 15.678 Atomic orbital electron populations 1.22386 0.96331 1.02331 1.01815 1.21597 0.93040 0.97144 0.91054 0.92709 1.20698 0.89129 1.02437 0.97757 1.19986 0.97195 0.94245 0.96361 1.21216 0.93896 0.96917 0.97704 1.21432 0.94316 0.99868 1.01462 1.17637 0.76968 0.97981 1.00923 1.91470 1.29788 1.95899 1.95211 1.21062 0.94330 1.00803 1.02599 1.20583 0.91799 0.93785 0.95596 1.98363 1.82407 1.49209 1.71599 1.60848 1.55892 1.09152 1.03733 1.19089 0.92361 0.91379 0.88265 1.21562 1.42486 0.97008 0.94576 0.91997 1.25835 0.96047 0.95691 1.02094 1.70089 1.50438 1.10542 1.26553 0.85464 0.77843 0.79029 0.79072 1.18842 1.20851 1.20412 0.91752 0.95091 0.90043 0.87521 0.90155 0.81298 0.82031 0.84259 0.85137 0.99173 1.02387 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.63 9.16 71.99 0.66 -3.97 16 2 C 0.08 2.57 2.58 44.92 0.12 2.69 16 3 H 0.05 1.90 7.80 -2.39 -0.02 1.89 16 4 C -0.06 -1.51 4.70 29.84 0.14 -1.36 16 5 C -0.08 -2.07 5.02 -19.84 -0.10 -2.17 16 6 C -0.08 -1.77 9.68 22.26 0.22 -1.55 16 7 C -0.15 -3.51 10.03 22.32 0.22 -3.29 16 8 C 0.08 2.36 7.30 22.37 0.16 2.52 16 9 F -0.14 -4.13 17.27 44.97 0.78 -3.35 16 10 C -0.17 -5.10 9.81 22.34 0.22 -4.88 16 11 C 0.01 0.29 6.02 22.32 0.13 0.43 16 12 Cl -0.05 -1.45 24.79 -2.72 -0.07 -1.52 16 13 N -0.67 -26.61 3.37 -495.57 -1.67 -28.29 16 14 C 0.22 11.35 5.24 85.56 0.45 11.80 16 15 C -0.52 -29.36 9.32 25.60 0.24 -29.12 16 16 H 0.06 3.45 7.81 -2.91 -0.02 3.43 16 17 C 0.00 0.05 5.46 84.65 0.46 0.51 16 18 N -0.94 -57.05 13.29 21.45 0.28 -56.76 16 19 Si 0.96 45.25 29.54 68.60 2.03 47.27 16 20 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 23 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 24 H 0.03 1.01 7.45 -2.39 -0.02 0.99 16 25 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.11 1.82 8.05 -2.38 -0.02 1.80 16 27 H 0.08 1.92 7.12 -2.38 -0.02 1.90 16 28 H 0.17 2.56 8.06 -2.91 -0.02 2.53 16 29 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 30 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 31 H 0.33 12.99 8.13 -89.69 -0.73 12.26 16 32 H -0.01 -0.58 8.06 -2.39 -0.02 -0.60 16 33 H -0.04 -2.34 7.44 -2.39 -0.02 -2.36 16 34 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -65.28 304.51 4.65 -60.63 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 0.38 Total: 10.41 kcal Atomic # 6 Polarization: -31.32 SS G_CDS: 2.92 Total: -28.40 kcal Atomic # 7 Polarization: -83.66 SS G_CDS: -1.39 Total: -85.05 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.78 Total: -3.35 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.07 Total: -1.52 kcal Total: -65.28 4.65 -60.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877484130.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.387 kcal (2) G-P(sol) polarization free energy of solvation -65.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds