Wall clock time and date at job start Mon Mar 30 2020 01:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47112 * 2 1 4 4 C 1.53000 * 109.47134 * 119.99827 * 2 1 3 5 5 C 1.50701 * 109.47173 * 184.99641 * 4 2 1 6 6 C 1.38248 * 119.97815 * 99.99612 * 5 4 2 7 7 C 1.38188 * 120.03784 * 179.97438 * 6 5 4 8 8 C 1.38490 * 119.99936 * 0.02562 * 7 6 5 9 9 F 1.35103 * 120.01637 * 179.97438 * 8 7 6 10 10 C 1.38410 * 119.96225 * 0.02562 * 8 7 6 11 11 C 1.38337 * 119.96277 * 359.72583 * 10 8 7 12 12 Cl 1.73605 * 120.00181 * 180.29818 * 11 10 8 13 13 N 1.46906 * 109.46946 * 239.99921 * 2 1 3 14 14 C 1.46901 * 110.99793 * 85.00144 * 13 2 1 15 15 C 1.50701 * 109.46921 * 179.97438 * 14 13 2 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47432 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46890 * 120.00210 * 19 17 15 22 22 H 1.48501 * 109.47062 * 240.00257 * 19 17 15 23 23 H 1.09001 * 109.47056 * 300.00064 * 1 2 3 24 24 H 1.09000 * 109.47395 * 59.99825 * 1 2 3 25 25 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47600 * 304.99945 * 4 2 1 27 27 H 1.09003 * 109.47172 * 65.00406 * 4 2 1 28 28 H 1.07997 * 119.98147 * 359.97438 * 6 5 4 29 29 H 1.07996 * 119.99762 * 180.02562 * 7 6 5 30 30 H 1.08003 * 120.01861 * 180.02562 * 10 8 7 31 31 H 1.00899 * 110.99995 * 321.04542 * 13 2 1 32 32 H 1.09002 * 109.47401 * 59.99808 * 14 13 2 33 33 H 1.09001 * 109.46874 * 299.99821 * 14 13 2 34 34 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6150 1.3127 6 6 4.1337 0.3250 2.1358 7 6 5.5108 0.4232 2.1953 8 6 6.2989 -0.4200 1.4298 9 9 7.6453 -0.3240 1.4873 10 6 5.7063 -1.3604 0.6049 11 6 4.3276 -1.4607 0.5504 12 17 3.5835 -2.6450 -0.4779 13 7 2.0196 -0.6925 -1.1995 14 6 2.0824 0.2226 -2.3469 15 6 2.5884 -0.5216 -3.5558 16 1 2.8379 -1.5695 -3.4794 17 6 2.7318 0.1353 -4.7595 18 7 2.4274 1.4113 -4.8526 19 14 3.3583 -0.7872 -6.2581 20 1 3.6268 -2.2013 -5.8924 21 1 2.3340 -0.7401 -7.3323 22 1 4.6116 -0.1539 -6.7410 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6054 -0.2617 2.1370 27 1 1.7517 -1.7715 1.2056 28 1 3.5195 0.9830 2.7325 29 1 5.9725 1.1574 2.8388 30 1 6.3200 -2.0186 0.0079 31 1 1.4495 -1.4980 -1.4100 32 1 2.7588 1.0462 -2.1183 33 1 1.0870 0.6163 -2.5525 34 1 2.5286 1.8735 -5.6994 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877484143.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:30 Heat of formation + Delta-G solvation = -33.292507 kcal Electronic energy + Delta-G solvation = -18604.298423 eV Core-core repulsion = 15477.110786 eV Total energy + Delta-G solvation = -3127.187638 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.77698 -39.20698 -36.47580 -35.78377 -33.08088 -31.58747 -30.69304 -29.50283 -26.10257 -25.77366 -22.91186 -22.04867 -21.38880 -20.08035 -17.62567 -16.48074 -16.36532 -15.57040 -15.47214 -14.80193 -14.40716 -14.17283 -13.75799 -13.66798 -13.60533 -13.30316 -12.68760 -12.26805 -11.89266 -11.82630 -11.60407 -11.30938 -11.07430 -11.00697 -10.89464 -10.63299 -10.60112 -10.47884 -10.00617 -9.76574 -9.11490 -8.69780 -8.43907 -8.22367 -7.03542 -5.98243 -3.98438 1.25522 1.29319 2.65843 3.32915 3.40540 3.45233 3.65404 4.40924 4.46964 4.79465 5.00169 5.01632 5.18187 5.37899 5.38395 5.48384 5.61471 5.73313 5.83146 5.85970 6.02887 6.12765 6.13701 6.27572 6.28877 6.44110 6.56746 6.66587 6.92621 7.33724 7.51351 7.85913 8.19907 8.48261 8.69964 9.11780 9.66065 11.13022 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.016320 B = 0.006579 C = 0.005585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.292293 B = 4255.080661 C = 5012.295526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.084 3.916 3 H 0.071 0.929 4 C -0.071 4.071 5 C -0.067 4.067 6 C -0.086 4.086 7 C -0.159 4.159 8 C 0.098 3.902 9 F -0.142 7.142 10 C -0.153 4.153 11 C 0.032 3.968 12 Cl -0.023 7.023 13 N -0.672 5.672 14 C 0.196 3.804 15 C -0.503 4.503 16 H 0.062 0.938 17 C 0.054 3.946 18 N -0.899 5.899 19 Si 0.893 3.107 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.285 1.285 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.134 0.866 29 H 0.133 0.867 30 H 0.140 0.860 31 H 0.328 0.672 32 H 0.023 0.977 33 H -0.016 1.016 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.553 -4.211 15.276 15.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.027 4.027 3 H 0.089 0.911 4 C -0.109 4.109 5 C -0.068 4.068 6 C -0.104 4.104 7 C -0.178 4.178 8 C 0.079 3.921 9 F -0.120 7.120 10 C -0.172 4.172 11 C 0.004 3.996 12 Cl 0.007 6.993 13 N -0.302 5.302 14 C 0.069 3.931 15 C -0.542 4.542 16 H 0.080 0.920 17 C -0.146 4.146 18 N -0.539 5.539 19 Si 0.721 3.279 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.211 1.211 23 H 0.068 0.932 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.152 0.848 29 H 0.151 0.849 30 H 0.158 0.842 31 H 0.146 0.854 32 H 0.042 0.958 33 H 0.002 0.998 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.206 -4.092 15.201 15.896 hybrid contribution -0.329 -0.163 -1.342 1.392 sum 1.877 -4.255 13.859 14.618 Atomic orbital electron populations 1.22486 0.97993 1.01489 1.01661 1.21509 0.91659 0.97985 0.91591 0.91067 1.20724 0.89711 1.02170 0.98278 1.19725 0.96612 0.94814 0.95671 1.20807 0.93586 0.97574 0.98412 1.21051 0.94203 1.00771 1.01808 1.17432 0.76871 0.98315 0.99500 1.91483 1.29530 1.95583 1.95425 1.20966 0.94239 1.00791 1.01248 1.20416 0.91341 0.94218 0.93602 1.98386 1.82005 1.53786 1.65122 1.61228 1.54648 1.09835 1.04492 1.19539 0.94919 0.91785 0.86850 1.21209 1.42713 0.96873 0.93419 0.91952 1.24966 0.95870 0.94876 0.98920 1.69970 1.49350 1.08986 1.25631 0.86520 0.78425 0.80082 0.82855 1.19706 1.21239 1.21122 0.93246 0.92252 0.92930 0.91285 0.90502 0.84783 0.84896 0.84220 0.85449 0.95843 0.99843 0.93154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.57 9.16 37.16 0.34 -2.23 16 2 C 0.08 1.36 2.58 -67.71 -0.17 1.19 16 3 H 0.07 1.27 7.80 -51.93 -0.40 0.86 16 4 C -0.07 -0.95 4.72 -27.88 -0.13 -1.08 16 5 C -0.07 -0.97 5.09 -104.58 -0.53 -1.50 16 6 C -0.09 -1.07 9.67 -39.60 -0.38 -1.46 16 7 C -0.16 -2.03 10.03 -39.51 -0.40 -2.43 16 8 C 0.10 1.43 7.30 -39.43 -0.29 1.14 16 9 F -0.14 -2.07 17.27 2.25 0.04 -2.03 16 10 C -0.15 -2.34 9.81 -39.48 -0.39 -2.73 16 11 C 0.03 0.50 6.00 -39.51 -0.24 0.26 16 12 Cl -0.02 -0.38 24.15 -51.86 -1.25 -1.63 16 13 N -0.67 -13.31 2.79 -107.99 -0.30 -13.61 16 14 C 0.20 4.96 5.24 -4.97 -0.03 4.94 16 15 C -0.50 -13.99 9.32 -34.44 -0.32 -14.31 16 16 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 17 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 19 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.98 7.45 -51.93 -0.39 0.60 16 25 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 26 H 0.07 0.75 8.00 -51.93 -0.42 0.33 16 27 H 0.08 1.01 7.34 -51.93 -0.38 0.63 16 28 H 0.13 1.31 8.04 -52.49 -0.42 0.89 16 29 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.14 2.00 8.06 -52.48 -0.42 1.58 16 31 H 0.33 6.41 7.92 -39.29 -0.31 6.10 16 32 H 0.02 0.66 8.06 -51.93 -0.42 0.24 16 33 H -0.02 -0.44 7.44 -51.93 -0.39 -0.82 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 303.28 15.07 4.57 4.57 Total: -1.00 -29.71 303.28 -8.22 -37.94 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -4.36 Total: 0.84 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -2.63 Total: -16.76 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.43 Total: -39.83 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.25 Total: -1.63 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.71 -8.22 -37.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877484143.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.645 kcal (2) G-P(sol) polarization free energy of solvation -29.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds