Wall clock time and date at job start Mon Mar 30 2020 01:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47112 * 2 1 4 4 C 1.53000 * 109.47134 * 119.99827 * 2 1 3 5 5 C 1.50701 * 109.47173 * 184.99641 * 4 2 1 6 6 C 1.38248 * 119.97815 * 99.99612 * 5 4 2 7 7 C 1.38188 * 120.03784 * 179.97438 * 6 5 4 8 8 C 1.38490 * 119.99936 * 0.02562 * 7 6 5 9 9 F 1.35103 * 120.01637 * 179.97438 * 8 7 6 10 10 C 1.38410 * 119.96225 * 0.02562 * 8 7 6 11 11 C 1.38337 * 119.96277 * 359.72583 * 10 8 7 12 12 Cl 1.73605 * 120.00181 * 180.29818 * 11 10 8 13 13 N 1.46906 * 109.46946 * 239.99921 * 2 1 3 14 14 C 1.46901 * 110.99793 * 85.00144 * 13 2 1 15 15 C 1.50701 * 109.46921 * 179.97438 * 14 13 2 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47432 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46890 * 120.00210 * 19 17 15 22 22 H 1.48501 * 109.47062 * 240.00257 * 19 17 15 23 23 H 1.09001 * 109.47056 * 300.00064 * 1 2 3 24 24 H 1.09000 * 109.47395 * 59.99825 * 1 2 3 25 25 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47600 * 304.99945 * 4 2 1 27 27 H 1.09003 * 109.47172 * 65.00406 * 4 2 1 28 28 H 1.07997 * 119.98147 * 359.97438 * 6 5 4 29 29 H 1.07996 * 119.99762 * 180.02562 * 7 6 5 30 30 H 1.08003 * 120.01861 * 180.02562 * 10 8 7 31 31 H 1.00899 * 110.99995 * 321.04542 * 13 2 1 32 32 H 1.09002 * 109.47401 * 59.99808 * 14 13 2 33 33 H 1.09001 * 109.46874 * 299.99821 * 14 13 2 34 34 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6150 1.3127 6 6 4.1337 0.3250 2.1358 7 6 5.5108 0.4232 2.1953 8 6 6.2989 -0.4200 1.4298 9 9 7.6453 -0.3240 1.4873 10 6 5.7063 -1.3604 0.6049 11 6 4.3276 -1.4607 0.5504 12 17 3.5835 -2.6450 -0.4779 13 7 2.0196 -0.6925 -1.1995 14 6 2.0824 0.2226 -2.3469 15 6 2.5884 -0.5216 -3.5558 16 1 2.8379 -1.5695 -3.4794 17 6 2.7318 0.1353 -4.7595 18 7 2.4274 1.4113 -4.8526 19 14 3.3583 -0.7872 -6.2581 20 1 3.6268 -2.2013 -5.8924 21 1 2.3340 -0.7401 -7.3323 22 1 4.6116 -0.1539 -6.7410 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6054 -0.2617 2.1370 27 1 1.7517 -1.7715 1.2056 28 1 3.5195 0.9830 2.7325 29 1 5.9725 1.1574 2.8388 30 1 6.3200 -2.0186 0.0079 31 1 1.4495 -1.4980 -1.4100 32 1 2.7588 1.0462 -2.1183 33 1 1.0870 0.6163 -2.5525 34 1 2.5286 1.8735 -5.6994 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877484143.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:29 Heat of formation + Delta-G solvation = -49.131932 kcal Electronic energy + Delta-G solvation = -18604.985272 eV Core-core repulsion = 15477.110786 eV Total energy + Delta-G solvation = -3127.874487 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.90668 -40.31825 -37.92075 -37.00306 -35.03718 -33.08784 -31.78922 -30.96936 -27.82551 -27.13057 -24.05330 -23.77800 -22.77149 -21.39122 -18.75573 -18.42827 -17.61190 -16.86801 -16.62938 -16.53741 -15.72640 -15.64381 -15.20375 -15.09766 -14.65856 -14.48665 -14.12958 -13.92533 -13.45548 -13.25924 -13.01062 -12.84305 -12.67185 -12.38538 -12.22308 -12.13014 -12.04815 -11.82570 -11.70813 -11.23457 -11.16517 -10.61378 -9.81014 -9.41380 -8.66942 -8.17270 -6.25022 0.14565 0.20971 1.38506 1.39986 1.46843 1.52544 2.41350 2.56069 3.16560 3.32269 3.66499 3.86029 3.90160 4.02830 4.23427 4.31612 4.42300 4.58201 4.65024 4.78522 4.97840 4.98798 5.03088 5.07238 5.19443 5.21923 5.24546 5.39134 5.49244 5.53857 5.71293 5.87330 6.13913 6.61045 6.87906 7.04009 7.45205 8.94205 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.016320 B = 0.006579 C = 0.005585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.292293 B = 4255.080661 C = 5012.295526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.081 3.919 3 H 0.053 0.947 4 C -0.061 4.061 5 C -0.080 4.080 6 C -0.078 4.078 7 C -0.153 4.153 8 C 0.084 3.916 9 F -0.145 7.145 10 C -0.170 4.170 11 C 0.010 3.990 12 Cl -0.039 7.039 13 N -0.663 5.663 14 C 0.216 3.784 15 C -0.515 4.515 16 H 0.063 0.937 17 C 0.000 4.000 18 N -0.936 5.936 19 Si 0.960 3.040 20 H -0.264 1.264 21 H -0.279 1.279 22 H -0.283 1.283 23 H 0.080 0.920 24 H 0.029 0.971 25 H 0.064 0.936 26 H 0.106 0.894 27 H 0.080 0.920 28 H 0.171 0.829 29 H 0.162 0.838 30 H 0.138 0.862 31 H 0.331 0.669 32 H -0.011 1.011 33 H -0.043 1.043 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.294 -4.428 16.770 17.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.030 4.030 3 H 0.072 0.928 4 C -0.099 4.099 5 C -0.081 4.081 6 C -0.096 4.096 7 C -0.172 4.172 8 C 0.065 3.935 9 F -0.124 7.124 10 C -0.190 4.190 11 C -0.017 4.017 12 Cl -0.010 7.010 13 N -0.294 5.294 14 C 0.088 3.912 15 C -0.553 4.553 16 H 0.081 0.919 17 C -0.197 4.197 18 N -0.577 5.577 19 Si 0.785 3.215 20 H -0.188 1.188 21 H -0.205 1.205 22 H -0.209 1.209 23 H 0.099 0.901 24 H 0.049 0.951 25 H 0.083 0.917 26 H 0.125 0.875 27 H 0.099 0.901 28 H 0.188 0.812 29 H 0.180 0.820 30 H 0.156 0.844 31 H 0.149 0.851 32 H 0.007 0.993 33 H -0.025 1.025 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.943 -4.327 16.718 17.378 hybrid contribution -0.232 -0.054 -1.712 1.729 sum 1.711 -4.380 15.006 15.726 Atomic orbital electron populations 1.22381 0.96351 1.02327 1.01772 1.21614 0.93037 0.97142 0.91202 0.92848 1.20678 0.89100 1.02329 0.97753 1.20006 0.97203 0.95013 0.95896 1.21233 0.93858 0.96891 0.97652 1.21430 0.94341 1.00322 1.01083 1.17648 0.76958 0.98818 1.00067 1.91470 1.29818 1.95627 1.95489 1.21066 0.94391 1.01543 1.02008 1.20615 0.91749 0.94917 0.94392 1.98370 1.82179 1.54556 1.65851 1.61122 1.55575 1.08979 1.03694 1.19096 0.92287 0.91405 0.88380 1.21561 1.42296 0.97028 0.94458 0.91885 1.25837 0.96112 0.95682 1.02100 1.70094 1.50557 1.10563 1.26499 0.85472 0.77818 0.79051 0.79118 1.18803 1.20481 1.20897 0.90098 0.95136 0.91719 0.87538 0.90139 0.81180 0.82000 0.84432 0.85128 0.99269 1.02500 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.63 9.16 71.98 0.66 -3.97 16 2 C 0.08 2.53 2.58 44.91 0.12 2.64 16 3 H 0.05 1.87 7.80 -2.39 -0.02 1.85 16 4 C -0.06 -1.46 4.72 29.85 0.14 -1.32 16 5 C -0.08 -2.16 5.09 -19.84 -0.10 -2.26 16 6 C -0.08 -1.72 9.67 22.26 0.22 -1.50 16 7 C -0.15 -3.50 10.03 22.32 0.22 -3.27 16 8 C 0.08 2.37 7.30 22.37 0.16 2.53 16 9 F -0.15 -4.15 17.27 44.97 0.78 -3.37 16 10 C -0.17 -5.23 9.81 22.33 0.22 -5.01 16 11 C 0.01 0.33 6.00 22.32 0.13 0.46 16 12 Cl -0.04 -1.29 24.15 -2.72 -0.07 -1.36 16 13 N -0.66 -26.41 2.79 -495.56 -1.38 -27.80 16 14 C 0.22 11.31 5.24 85.56 0.45 11.75 16 15 C -0.51 -29.09 9.32 25.60 0.24 -28.85 16 16 H 0.06 3.49 7.81 -2.91 -0.02 3.46 16 17 C 0.00 0.01 5.46 84.66 0.46 0.47 16 18 N -0.94 -57.19 13.29 21.45 0.28 -56.90 16 19 Si 0.96 45.26 29.54 68.60 2.03 47.28 16 20 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 22 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 23 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.03 1.00 7.45 -2.39 -0.02 0.98 16 25 H 0.06 1.61 8.13 -2.39 -0.02 1.59 16 26 H 0.11 1.80 8.00 -2.39 -0.02 1.78 16 27 H 0.08 1.90 7.34 -2.39 -0.02 1.89 16 28 H 0.17 2.47 8.04 -2.91 -0.02 2.44 16 29 H 0.16 2.72 8.06 -2.91 -0.02 2.69 16 30 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 31 H 0.33 12.92 7.92 -89.69 -0.71 12.21 16 32 H -0.01 -0.63 8.06 -2.39 -0.02 -0.65 16 33 H -0.04 -2.41 7.44 -2.39 -0.02 -2.43 16 34 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -65.39 303.28 4.96 -60.43 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 0.40 Total: 10.04 kcal Atomic # 6 Polarization: -31.24 SS G_CDS: 2.92 Total: -28.32 kcal Atomic # 7 Polarization: -83.60 SS G_CDS: -1.10 Total: -84.70 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.78 Total: -3.37 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.07 Total: -1.36 kcal Total: -65.39 4.96 -60.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877484143.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.300 kcal (2) G-P(sol) polarization free energy of solvation -65.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds