Wall clock time and date at job start Mon Mar 30 2020 00:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34231 * 117.00103 * 2 1 4 4 O 1.20825 * 119.99787 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00350 * 179.97438 * 3 2 1 6 6 C 1.53006 * 109.47350 * 179.97438 * 5 3 2 7 7 N 1.46496 * 109.46964 * 179.97438 * 6 5 3 8 8 C 1.36943 * 120.00522 * 264.12351 * 7 6 5 9 9 H 1.07990 * 120.00331 * 189.45674 * 8 7 6 10 10 C 1.38817 * 119.99416 * 9.45265 * 8 7 6 11 11 N 1.31615 * 119.99870 * 23.08084 * 10 8 7 12 12 Si 1.86801 * 119.99936 * 203.07552 * 10 8 7 13 13 H 1.48498 * 109.46783 * 84.98030 * 12 10 8 14 14 H 1.48493 * 109.46904 * 204.98313 * 12 10 8 15 15 H 1.48499 * 109.47117 * 324.98153 * 12 10 8 16 16 C 1.46499 * 119.99883 * 84.12841 * 7 6 5 17 17 C 1.50704 * 109.47286 * 269.99553 * 16 7 6 18 18 C 1.35340 * 123.76443 * 94.99671 * 17 16 7 19 19 S 1.72120 * 104.15076 * 179.97438 * 18 17 16 20 20 N 1.56510 * 95.88450 * 0.02562 * 19 18 17 21 21 N 1.27574 * 109.22092 * 0.02562 * 20 19 18 22 22 H 1.08994 * 109.46902 * 300.00080 * 1 2 3 23 23 H 1.08996 * 109.46713 * 60.00359 * 1 2 3 24 24 H 1.08998 * 109.46511 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47540 * 59.99718 * 5 3 2 26 26 H 1.09004 * 109.47402 * 299.99839 * 5 3 2 27 27 H 1.08997 * 109.46853 * 60.00221 * 6 5 3 28 28 H 1.08993 * 109.46878 * 299.99820 * 6 5 3 29 29 H 0.97004 * 119.99853 * 179.97438 * 11 10 8 30 30 H 1.09003 * 109.46952 * 149.99835 * 16 7 6 31 31 H 1.08994 * 109.47122 * 29.99728 * 16 7 6 32 32 H 1.07999 * 127.92764 * 359.95010 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7422 -0.0002 7 7 5.4631 2.8188 0.0010 8 6 6.1396 2.9768 1.1811 9 1 7.1990 3.1860 1.1724 10 6 5.4634 2.8681 2.3886 11 7 4.3365 2.1912 2.4531 12 14 6.1530 3.6824 3.9218 13 1 5.7166 5.1011 3.9676 14 1 5.6543 2.9719 5.1265 15 1 7.6364 3.6217 3.8900 16 6 6.2024 2.7266 -1.2604 17 6 6.5298 1.2836 -1.5464 18 6 5.7723 0.4815 -2.3302 19 16 6.5979 -1.0287 -2.3093 20 7 7.7615 -0.5624 -1.3721 21 7 7.5848 0.6620 -1.0606 22 1 -0.3633 0.5138 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 3.9565 0.7806 -0.8891 26 1 3.9557 0.7810 0.8909 27 1 3.6100 3.2368 0.8893 28 1 3.6108 3.2357 -0.8906 29 1 3.8642 2.1150 3.2970 30 1 7.1260 3.3002 -1.1829 31 1 5.5921 3.1279 -2.0694 32 1 4.8589 0.7314 -2.8495 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877709371.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:54 Heat of formation + Delta-G solvation = -3.162866 kcal Electronic energy + Delta-G solvation = -19132.601645 eV Core-core repulsion = 16028.684195 eV Total energy + Delta-G solvation = -3103.917450 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.66723 -41.25325 -38.12009 -37.20620 -34.10642 -32.70215 -31.87791 -28.65286 -27.94035 -27.35649 -25.79883 -23.22929 -21.89276 -21.42553 -19.20510 -18.89598 -18.19498 -17.46781 -17.27127 -16.94067 -16.50141 -16.29688 -15.53344 -15.12463 -14.95369 -14.54410 -14.22106 -13.50672 -13.44684 -13.28714 -13.01488 -12.90579 -12.74078 -12.55743 -12.28056 -12.00144 -11.84402 -11.72762 -11.58644 -11.33710 -10.86281 -10.61503 -10.47965 -10.36539 -9.00748 -7.88787 -5.19971 -0.52342 0.42544 0.95673 1.38477 1.44513 1.49147 1.53824 1.58163 1.99561 2.54520 3.22800 3.42895 3.67676 4.14608 4.20863 4.29478 4.35930 4.37150 4.51389 4.65406 4.73361 4.78567 4.84824 4.92423 5.03886 5.41548 5.59139 5.71588 5.86372 6.28918 6.93458 7.07105 7.15919 7.81829 8.18840 9.13653 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.011173 B = 0.009917 C = 0.005955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.431467 B = 2822.674302 C = 4701.162870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.374 6.374 3 C 0.475 3.525 4 O -0.544 6.544 5 C -0.110 4.110 6 C 0.190 3.810 7 N -0.588 5.588 8 C -0.247 4.247 9 H 0.074 0.926 10 C -0.045 4.045 11 N -0.918 5.918 12 Si 0.956 3.044 13 H -0.287 1.287 14 H -0.301 1.301 15 H -0.278 1.278 16 C 0.215 3.785 17 C 0.008 3.992 18 C -0.286 4.286 19 S 0.454 5.546 20 N -0.342 5.342 21 N -0.264 5.264 22 H 0.050 0.950 23 H 0.066 0.934 24 H 0.132 0.868 25 H 0.089 0.911 26 H 0.104 0.896 27 H 0.065 0.935 28 H 0.039 0.961 29 H 0.246 0.754 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.218 -6.151 -11.918 14.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.291 6.291 3 C 0.320 3.680 4 O -0.434 6.434 5 C -0.149 4.149 6 C 0.064 3.936 7 N -0.306 5.306 8 C -0.377 4.377 9 H 0.092 0.908 10 C -0.240 4.240 11 N -0.565 5.565 12 Si 0.786 3.214 13 H -0.214 1.214 14 H -0.228 1.228 15 H -0.203 1.203 16 C 0.084 3.916 17 C -0.141 4.141 18 C -0.444 4.444 19 S 0.588 5.412 20 N -0.320 5.320 21 N -0.131 5.131 22 H 0.069 0.931 23 H 0.084 0.916 24 H 0.150 0.850 25 H 0.107 0.893 26 H 0.122 0.878 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.121 0.879 32 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -3.255 -7.298 -11.430 13.946 hybrid contribution -0.773 1.526 1.325 2.164 sum -4.028 -5.772 -10.104 12.314 Atomic orbital electron populations 1.23477 0.75539 1.05379 1.02162 1.86537 1.24705 1.33647 1.84170 1.24361 0.92693 0.80761 0.70161 1.90553 1.68037 1.37300 1.47544 1.22245 0.84860 1.03514 1.04328 1.20553 0.81694 0.91770 0.99612 1.44556 1.01752 1.81889 1.02429 1.19507 0.93891 1.40079 0.84201 0.90775 1.25304 0.98428 1.00554 0.99699 1.70126 1.19608 1.41718 1.25097 0.85439 0.77834 0.78420 0.79709 1.21419 1.22794 1.20332 1.19806 0.97240 0.85693 0.88842 1.23947 0.90750 1.03869 0.95501 1.28463 1.09064 0.99009 1.07826 1.80736 1.10466 1.14707 1.35272 1.78632 1.24774 1.10029 1.18593 1.71195 1.21419 1.00076 1.20447 0.93103 0.91565 0.85027 0.89258 0.87850 0.91644 0.94257 0.94443 0.91288 0.87877 0.76171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.56 113.37 1.20 1.88 16 2 O -0.37 -12.73 10.57 -51.43 -0.54 -13.27 16 3 C 0.48 18.94 7.96 71.23 0.57 19.51 16 4 O -0.54 -23.88 15.73 21.97 0.35 -23.54 16 5 C -0.11 -4.54 5.46 29.85 0.16 -4.38 16 6 C 0.19 8.47 4.21 86.38 0.36 8.84 16 7 N -0.59 -26.55 2.52 -706.36 -1.78 -28.33 16 8 C -0.25 -12.84 9.71 84.03 0.82 -12.02 16 9 H 0.07 3.92 7.91 -2.92 -0.02 3.89 16 10 C -0.04 -2.41 4.94 84.86 0.42 -1.99 16 11 N -0.92 -50.53 8.47 21.65 0.18 -50.34 16 12 Si 0.96 44.97 29.61 68.60 2.03 47.00 16 13 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 14 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 15 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 16 C 0.21 7.74 6.19 85.63 0.53 8.27 16 17 C 0.01 0.27 6.10 41.91 0.26 0.53 16 18 C -0.29 -7.62 9.24 67.15 0.62 -7.00 16 19 S 0.45 11.50 23.40 -56.49 -1.32 10.18 16 20 N -0.34 -12.39 12.54 37.02 0.46 -11.93 16 21 N -0.26 -10.72 11.68 -51.26 -0.60 -11.31 16 22 H 0.05 1.34 8.13 -2.39 -0.02 1.32 16 23 H 0.07 1.51 8.13 -2.39 -0.02 1.49 16 24 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.09 3.18 5.29 -2.39 -0.01 3.16 16 26 H 0.10 5.16 6.28 -2.38 -0.01 5.14 16 27 H 0.07 3.48 5.82 -2.39 -0.01 3.47 16 28 H 0.04 1.59 7.94 -2.39 -0.02 1.57 16 29 H 0.25 13.58 8.31 -92.71 -0.77 12.81 16 30 H 0.07 2.52 8.03 -2.39 -0.02 2.50 16 31 H 0.10 2.94 7.93 -2.39 -0.02 2.92 16 32 H 0.22 4.22 7.84 -2.91 -0.02 4.20 16 Total: -1.00 -66.66 289.95 4.86 -61.81 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: 1.15 Total: 6.10 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 4.93 Total: 13.63 kcal Atomic # 7 Polarization: -100.19 SS G_CDS: -1.73 Total: -101.92 kcal Atomic # 8 Polarization: -36.61 SS G_CDS: -0.20 Total: -36.81 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 16 Polarization: 11.50 SS G_CDS: -1.32 Total: 10.18 kcal Total: -66.66 4.86 -61.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877709371.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.645 kcal (2) G-P(sol) polarization free energy of solvation -66.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds