Wall clock time and date at job start Mon Mar 30 2020 01:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46899 * 109.47359 * 355.21513 * 3 2 1 5 5 C 1.46900 * 111.00134 * 162.94912 * 4 3 2 6 6 C 1.52995 * 109.47265 * 190.00115 * 5 4 3 7 7 C 1.53002 * 109.47262 * 180.02562 * 6 5 4 8 8 S 1.80996 * 109.47339 * 180.02562 * 7 6 5 9 9 C 1.76198 * 100.00101 * 179.97438 * 8 7 6 10 10 H 1.07990 * 119.99872 * 0.02562 * 9 8 7 11 11 C 1.38801 * 119.99984 * 179.97438 * 9 8 7 12 12 N 1.31629 * 120.00134 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 119.99882 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47073 * 90.00122 * 13 11 9 15 15 H 1.48500 * 109.46919 * 209.99581 * 13 11 9 16 16 H 1.48497 * 109.47186 * 330.00037 * 13 11 9 17 17 C 1.46895 * 110.99989 * 286.90896 * 4 3 2 18 18 C 1.53042 * 113.15459 * 76.55268 * 17 4 3 19 19 S 1.81431 * 89.93142 * 211.83123 * 18 17 4 20 20 C 1.53039 * 113.15434 * 336.17501 * 17 4 3 21 21 H 4.40892 * 5.52143 * 179.97438 * 4 1 2 22 22 H 1.09004 * 109.47264 * 235.21462 * 3 2 1 23 23 H 1.09008 * 109.47104 * 115.21918 * 3 2 1 24 24 H 1.09002 * 109.47471 * 310.00439 * 5 4 3 25 25 H 1.09008 * 109.46711 * 70.00206 * 5 4 3 26 26 H 1.09002 * 109.47141 * 300.00526 * 6 5 4 27 27 H 1.08998 * 109.47089 * 60.00499 * 6 5 4 28 28 H 1.09002 * 109.47118 * 300.00106 * 7 6 5 29 29 H 1.08998 * 109.47015 * 60.00019 * 7 6 5 30 30 H 0.96998 * 119.99952 * 180.02562 * 12 11 9 31 31 H 1.09001 * 112.52556 * 206.36319 * 17 4 3 32 32 H 1.09000 * 113.14346 * 327.10869 * 18 17 4 33 33 H 1.08991 * 113.15406 * 96.55163 * 18 17 4 34 34 H 1.09011 * 113.14604 * 263.41034 * 20 17 4 35 35 H 1.09001 * 113.14685 * 32.84834 * 20 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1364 -1.3793 0.1155 5 6 4.5481 -1.4712 -0.2803 6 6 4.9528 -2.9427 -0.3877 7 6 6.4233 -3.0385 -0.7993 8 16 6.9019 -4.7794 -0.9272 9 6 8.5893 -4.5988 -1.4013 10 1 9.0133 -3.6131 -1.5235 11 6 9.3738 -5.7234 -1.6167 12 7 10.6342 -5.5885 -1.9714 13 14 8.6405 -7.4283 -1.4046 14 1 8.0685 -7.8854 -2.6966 15 1 9.7012 -8.3729 -0.9712 16 1 7.5690 -7.3820 -0.3776 17 6 2.9361 -1.8970 1.4755 18 6 1.4856 -2.2928 1.7612 19 16 1.7030 -1.8259 3.5008 20 6 2.8390 -0.7934 2.5313 21 1 -1.0498 -0.0004 0.0002 22 1 3.0092 0.5871 0.8440 23 1 3.0092 0.4387 -0.9298 24 1 4.6873 -0.9847 -1.2457 25 1 5.1681 -0.9775 0.4682 26 1 4.8136 -3.4293 0.5777 27 1 4.3328 -3.4364 -1.1361 28 1 6.5629 -2.5519 -1.7646 29 1 7.0430 -2.5450 -0.0507 30 1 11.1823 -6.3744 -2.1223 31 1 3.6521 -2.6767 1.7352 32 1 0.7604 -1.6698 1.2377 33 1 1.2969 -3.3575 1.6237 34 1 3.7843 -0.6022 3.0395 35 1 2.3754 0.1190 2.1561 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878914576.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:12 Heat of formation + Delta-G solvation = 87.020351 kcal Electronic energy + Delta-G solvation = -15989.435458 eV Core-core repulsion = 13435.721859 eV Total energy + Delta-G solvation = -2553.713598 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.66223 -34.70176 -33.70706 -32.45141 -31.78251 -27.72040 -26.40949 -25.70831 -24.53575 -22.07752 -20.10780 -18.31682 -17.57937 -17.42706 -16.36335 -15.69916 -15.06263 -15.02183 -14.91408 -14.21145 -13.91116 -13.45403 -13.30072 -12.87419 -12.73548 -12.37740 -12.25917 -12.17859 -11.58877 -11.22823 -11.09606 -11.04984 -10.77236 -10.54560 -10.38008 -10.25313 -10.12495 -9.79782 -9.01633 -8.72208 -8.57945 -7.95410 -6.95834 -6.29641 -4.02100 1.56890 1.69894 2.41311 2.56369 2.99563 3.29751 3.44992 3.52285 3.71811 4.06352 4.18869 4.30735 4.50589 4.63879 4.76766 4.90067 4.97731 5.08412 5.10165 5.12752 5.20200 5.33648 5.46047 5.51874 5.55101 5.68481 5.76863 5.85929 6.14943 6.39285 6.54979 6.62659 6.78372 7.31830 7.94089 8.42749 9.16379 10.79848 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.030383 B = 0.003654 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.340831 B = 7662.030283 C = 8072.307451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.173 4.173 3 C 0.147 3.853 4 N -0.519 5.519 5 C 0.059 3.941 6 C -0.099 4.099 7 C -0.083 4.083 8 S -0.213 6.213 9 C -0.503 4.503 10 H 0.088 0.912 11 C 0.092 3.908 12 N -0.882 5.882 13 Si 0.861 3.139 14 H -0.268 1.268 15 H -0.276 1.276 16 H -0.238 1.238 17 C 0.082 3.918 18 C -0.086 4.086 19 S -0.292 6.292 20 C -0.126 4.126 21 H 0.218 0.782 22 H 0.073 0.927 23 H 0.103 0.897 24 H 0.083 0.917 25 H 0.042 0.958 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.270 0.730 31 H 0.130 0.870 32 H 0.119 0.881 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.529 11.604 5.809 22.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.173 4.173 3 C 0.021 3.979 4 N -0.241 5.241 5 C -0.070 4.070 6 C -0.138 4.138 7 C -0.232 4.232 8 S 0.014 5.986 9 C -0.650 4.650 10 H 0.106 0.894 11 C -0.116 4.116 12 N -0.519 5.519 13 Si 0.686 3.314 14 H -0.193 1.193 15 H -0.201 1.201 16 H -0.161 1.161 17 C -0.029 4.029 18 C -0.234 4.234 19 S -0.067 6.067 20 C -0.275 4.275 21 H 0.234 0.766 22 H 0.091 0.909 23 H 0.121 0.879 24 H 0.101 0.899 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.147 0.853 32 H 0.137 0.863 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -19.643 9.987 6.953 23.108 hybrid contribution 1.281 1.005 -0.678 1.763 sum -18.363 10.992 6.275 22.302 Atomic orbital electron populations 1.24872 0.95912 0.99692 1.01070 1.22756 0.94133 1.00289 1.00147 1.19271 0.85435 0.90203 1.03011 1.61922 1.20120 1.19249 1.22855 1.22259 0.85349 0.98478 1.00889 1.21379 0.95165 0.94488 1.02723 1.23006 0.97096 0.99850 1.03244 1.84192 1.16241 1.06918 1.91206 1.22121 0.92268 0.97497 1.53161 0.89429 1.24796 0.94191 0.99263 0.93391 1.69935 1.06203 1.30802 1.44945 0.86675 0.80356 0.83766 0.80583 1.19343 1.20112 1.16150 1.23352 0.96909 0.96344 0.86264 1.24940 1.00902 1.06689 0.90887 1.88961 1.55768 1.50460 1.11551 1.25319 1.02210 1.02449 0.97558 0.76563 0.90950 0.87918 0.89869 0.93923 0.91445 0.90388 0.91300 0.91488 0.91964 0.85259 0.86252 0.88473 0.88431 0.86803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.59 17.76 29.55 0.52 -1.07 16 2 C -0.17 -1.56 10.52 -37.12 -0.39 -1.95 16 3 C 0.15 1.21 5.05 -6.61 -0.03 1.18 16 4 N -0.52 -5.14 4.54 -242.48 -1.10 -6.24 16 5 C 0.06 0.63 4.93 -3.83 -0.02 0.61 16 6 C -0.10 -1.38 5.20 -26.73 -0.14 -1.52 16 7 C -0.08 -1.50 5.67 37.16 0.21 -1.29 16 8 S -0.21 -5.07 19.41 -107.50 -2.09 -7.16 16 9 C -0.50 -14.39 10.04 30.94 0.31 -14.08 16 10 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 11 C 0.09 2.66 5.50 -17.43 -0.10 2.57 16 12 N -0.88 -26.59 13.97 55.49 0.78 -25.81 16 13 Si 0.86 21.39 27.74 -169.99 -4.72 16.68 16 14 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.24 -5.78 6.74 56.52 0.38 -5.40 16 17 C 0.08 0.82 3.37 -67.67 -0.23 0.59 16 18 C -0.09 -0.88 7.42 37.18 0.28 -0.60 16 19 S -0.29 -3.35 24.80 -107.50 -2.67 -6.01 16 20 C -0.13 -1.17 6.61 37.18 0.25 -0.92 16 21 H 0.22 1.09 7.80 -54.10 -0.42 0.67 16 22 H 0.07 0.51 5.49 -51.93 -0.29 0.23 16 23 H 0.10 0.74 7.79 -51.92 -0.40 0.33 16 24 H 0.08 0.83 7.85 -51.93 -0.41 0.42 16 25 H 0.04 0.43 8.12 -51.92 -0.42 0.00 16 26 H 0.07 0.94 6.33 -51.93 -0.33 0.61 16 27 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.07 1.24 8.14 -51.91 -0.42 0.82 16 29 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 30 H 0.27 7.56 8.31 -40.82 -0.34 7.23 16 31 H 0.13 1.41 6.09 -51.93 -0.32 1.09 16 32 H 0.12 1.19 4.13 -51.93 -0.21 0.98 16 33 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.10 0.86 8.14 -51.92 -0.42 0.43 16 35 H 0.11 0.97 4.88 -51.93 -0.25 0.71 16 LS Contribution 309.02 15.07 4.66 4.66 Total: -1.00 -31.13 309.02 -9.22 -40.35 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -4.74 Total: 0.02 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: 0.66 Total: -16.48 kcal Atomic # 7 Polarization: -31.73 SS G_CDS: -0.33 Total: -32.06 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.72 Total: 16.68 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -4.75 Total: -13.17 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.13 -9.22 -40.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878914576.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.371 kcal (2) G-P(sol) polarization free energy of solvation -31.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds