Wall clock time and date at job start Mon Mar 30 2020 01:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46899 * 109.47359 * 355.21513 * 3 2 1 5 5 C 1.46900 * 111.00134 * 162.94912 * 4 3 2 6 6 C 1.52995 * 109.47265 * 190.00115 * 5 4 3 7 7 C 1.53002 * 109.47262 * 180.02562 * 6 5 4 8 8 S 1.80996 * 109.47339 * 180.02562 * 7 6 5 9 9 C 1.76198 * 100.00101 * 179.97438 * 8 7 6 10 10 H 1.07990 * 119.99872 * 0.02562 * 9 8 7 11 11 C 1.38801 * 119.99984 * 179.97438 * 9 8 7 12 12 N 1.31629 * 120.00134 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 119.99882 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47073 * 90.00122 * 13 11 9 15 15 H 1.48500 * 109.46919 * 209.99581 * 13 11 9 16 16 H 1.48497 * 109.47186 * 330.00037 * 13 11 9 17 17 C 1.46895 * 110.99989 * 286.90896 * 4 3 2 18 18 C 1.53042 * 113.15459 * 76.55268 * 17 4 3 19 19 S 1.81431 * 89.93142 * 211.83123 * 18 17 4 20 20 C 1.53039 * 113.15434 * 336.17501 * 17 4 3 21 21 H 4.40892 * 5.52143 * 179.97438 * 4 1 2 22 22 H 1.09004 * 109.47264 * 235.21462 * 3 2 1 23 23 H 1.09008 * 109.47104 * 115.21918 * 3 2 1 24 24 H 1.09002 * 109.47471 * 310.00439 * 5 4 3 25 25 H 1.09008 * 109.46711 * 70.00206 * 5 4 3 26 26 H 1.09002 * 109.47141 * 300.00526 * 6 5 4 27 27 H 1.08998 * 109.47089 * 60.00499 * 6 5 4 28 28 H 1.09002 * 109.47118 * 300.00106 * 7 6 5 29 29 H 1.08998 * 109.47015 * 60.00019 * 7 6 5 30 30 H 0.96998 * 119.99952 * 180.02562 * 12 11 9 31 31 H 1.09001 * 112.52556 * 206.36319 * 17 4 3 32 32 H 1.09000 * 113.14346 * 327.10869 * 18 17 4 33 33 H 1.08991 * 113.15406 * 96.55163 * 18 17 4 34 34 H 1.09011 * 113.14604 * 263.41034 * 20 17 4 35 35 H 1.09001 * 113.14685 * 32.84834 * 20 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1364 -1.3793 0.1155 5 6 4.5481 -1.4712 -0.2803 6 6 4.9528 -2.9427 -0.3877 7 6 6.4233 -3.0385 -0.7993 8 16 6.9019 -4.7794 -0.9272 9 6 8.5893 -4.5988 -1.4013 10 1 9.0133 -3.6131 -1.5235 11 6 9.3738 -5.7234 -1.6167 12 7 10.6342 -5.5885 -1.9714 13 14 8.6405 -7.4283 -1.4046 14 1 8.0685 -7.8854 -2.6966 15 1 9.7012 -8.3729 -0.9712 16 1 7.5690 -7.3820 -0.3776 17 6 2.9361 -1.8970 1.4755 18 6 1.4856 -2.2928 1.7612 19 16 1.7030 -1.8259 3.5008 20 6 2.8390 -0.7934 2.5313 21 1 -1.0498 -0.0004 0.0002 22 1 3.0092 0.5871 0.8440 23 1 3.0092 0.4387 -0.9298 24 1 4.6873 -0.9847 -1.2457 25 1 5.1681 -0.9775 0.4682 26 1 4.8136 -3.4293 0.5777 27 1 4.3328 -3.4364 -1.1361 28 1 6.5629 -2.5519 -1.7646 29 1 7.0430 -2.5450 -0.0507 30 1 11.1823 -6.3744 -2.1223 31 1 3.6521 -2.6767 1.7352 32 1 0.7604 -1.6698 1.2377 33 1 1.2969 -3.3575 1.6237 34 1 3.7843 -0.6022 3.0395 35 1 2.3754 0.1190 2.1561 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878914576.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:12 Heat of formation + Delta-G solvation = 67.930268 kcal Electronic energy + Delta-G solvation = -15990.263266 eV Core-core repulsion = 13435.721859 eV Total energy + Delta-G solvation = -2554.541406 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.43420 -35.71467 -34.66568 -34.37083 -32.71380 -28.59975 -27.89387 -27.18032 -25.50385 -23.14300 -20.99996 -19.59590 -18.90245 -18.28376 -17.25634 -17.06289 -16.59698 -16.12723 -15.96365 -15.45127 -14.98018 -14.84350 -14.28022 -14.06197 -13.71645 -13.55878 -13.41490 -13.30424 -13.01993 -12.98544 -12.54122 -12.10721 -12.01181 -11.71224 -11.66027 -11.38266 -11.14724 -11.06839 -10.87847 -10.51742 -9.47665 -8.95846 -8.83569 -8.50420 -6.20684 0.79416 0.87097 1.14864 1.33244 1.49123 1.70137 1.86281 1.95542 2.26121 2.71772 2.88039 2.92625 3.34756 3.55374 3.73754 3.86527 4.04632 4.14564 4.20033 4.31572 4.39098 4.50085 4.53791 4.58259 4.69743 4.72515 4.83503 4.93499 5.14408 5.19974 5.33414 5.71521 5.85097 5.97262 6.12168 6.72040 6.94389 8.62614 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.030383 B = 0.003654 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.340831 B = 7662.030283 C = 8072.307451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.201 4.201 3 C 0.146 3.854 4 N -0.523 5.523 5 C 0.068 3.932 6 C -0.088 4.088 7 C -0.069 4.069 8 S -0.225 6.225 9 C -0.520 4.520 10 H 0.052 0.948 11 C 0.038 3.962 12 N -0.924 5.924 13 Si 0.924 3.076 14 H -0.262 1.262 15 H -0.265 1.265 16 H -0.229 1.229 17 C 0.083 3.917 18 C -0.075 4.075 19 S -0.341 6.341 20 C -0.108 4.108 21 H 0.240 0.760 22 H 0.087 0.913 23 H 0.115 0.885 24 H 0.095 0.905 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.276 0.724 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.277 12.027 5.976 24.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.201 4.201 3 C 0.020 3.980 4 N -0.246 5.246 5 C -0.061 4.061 6 C -0.127 4.127 7 C -0.218 4.218 8 S 0.003 5.997 9 C -0.667 4.667 10 H 0.070 0.930 11 C -0.167 4.167 12 N -0.562 5.562 13 Si 0.745 3.255 14 H -0.187 1.187 15 H -0.189 1.189 16 H -0.152 1.152 17 C -0.028 4.028 18 C -0.223 4.223 19 S -0.117 6.117 20 C -0.257 4.257 21 H 0.256 0.744 22 H 0.104 0.896 23 H 0.133 0.867 24 H 0.113 0.887 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.113 0.887 34 H 0.123 0.877 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -21.398 10.424 7.122 24.844 hybrid contribution 1.775 1.018 -0.751 2.179 sum -19.623 11.442 6.370 23.591 Atomic orbital electron populations 1.25574 0.96775 0.98582 1.00219 1.23073 0.94752 1.01275 1.01022 1.19367 0.85251 0.89162 1.04260 1.61835 1.19473 1.20730 1.22573 1.22094 0.86086 0.95849 1.02050 1.21262 0.91865 0.97156 1.02372 1.23072 0.99813 0.95332 1.03537 1.83924 1.12530 1.12333 1.90944 1.22355 0.95222 0.96147 1.53022 0.92984 1.25762 0.94556 1.03388 0.92991 1.70037 1.07703 1.32291 1.46147 0.85731 0.79990 0.78784 0.80960 1.18666 1.18949 1.15243 1.23262 0.96425 0.96426 0.86670 1.24945 1.01301 1.06634 0.89464 1.89171 1.57132 1.51989 1.13386 1.25319 1.01827 1.02210 0.96362 0.74370 0.89588 0.86707 0.88711 0.92782 0.91357 0.90912 0.91237 0.91373 0.91471 0.86130 0.85749 0.88718 0.87669 0.85634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.64 17.76 74.32 1.32 -1.32 16 2 C -0.20 -3.12 10.52 31.13 0.33 -2.79 16 3 C 0.15 1.98 5.05 84.50 0.43 2.41 16 4 N -0.52 -8.99 4.54 -921.08 -4.18 -13.17 16 5 C 0.07 1.26 4.93 86.30 0.43 1.68 16 6 C -0.09 -2.26 5.20 30.59 0.16 -2.10 16 7 C -0.07 -2.40 5.67 71.98 0.41 -1.99 16 8 S -0.23 -10.55 19.41 -56.49 -1.10 -11.65 16 9 C -0.52 -30.22 10.04 67.95 0.68 -29.54 16 10 H 0.05 3.28 8.03 -2.92 -0.02 3.25 16 11 C 0.04 2.19 5.50 84.86 0.47 2.66 16 12 N -0.92 -56.63 13.97 21.65 0.30 -56.32 16 13 Si 0.92 43.96 27.74 68.60 1.90 45.86 16 14 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 15 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 16 H -0.23 -10.49 6.74 99.48 0.67 -9.82 16 17 C 0.08 1.49 3.37 44.94 0.15 1.64 16 18 C -0.08 -1.43 7.42 72.00 0.53 -0.89 16 19 S -0.34 -7.47 24.80 -56.49 -1.40 -8.87 16 20 C -0.11 -1.77 6.61 72.00 0.48 -1.30 16 21 H 0.24 1.75 7.80 -4.43 -0.03 1.72 16 22 H 0.09 0.93 5.49 -2.38 -0.01 0.92 16 23 H 0.12 1.29 7.79 -2.38 -0.02 1.27 16 24 H 0.09 1.58 7.85 -2.39 -0.02 1.56 16 25 H 0.05 0.91 8.12 -2.38 -0.02 0.89 16 26 H 0.07 1.77 6.33 -2.39 -0.02 1.76 16 27 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.07 2.43 8.14 -2.39 -0.02 2.42 16 29 H 0.07 2.38 8.14 -2.40 -0.02 2.36 16 30 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 31 H 0.12 2.41 6.09 -2.39 -0.01 2.40 16 32 H 0.12 2.25 4.13 -2.39 -0.01 2.24 16 33 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.13 1.79 4.88 -2.39 -0.01 1.78 16 Total: -1.00 -67.38 309.02 1.94 -65.44 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 1.04 Total: 10.25 kcal Atomic # 6 Polarization: -36.92 SS G_CDS: 5.38 Total: -31.54 kcal Atomic # 7 Polarization: -65.62 SS G_CDS: -3.88 Total: -69.50 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.90 Total: 45.86 kcal Atomic # 16 Polarization: -18.02 SS G_CDS: -2.50 Total: -20.51 kcal Total: -67.38 1.94 -65.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878914576.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.368 kcal (2) G-P(sol) polarization free energy of solvation -67.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds