Wall clock time and date at job start Mon Mar 30 2020 00:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34235 * 116.99748 * 2 1 4 4 O 1.20820 * 119.99798 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99657 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.46585 * 179.97438 * 5 3 2 7 7 N 1.46500 * 109.46859 * 180.02562 * 6 5 3 8 8 C 1.36945 * 120.00198 * 270.00268 * 7 6 5 9 9 H 1.07995 * 119.99520 * 33.59033 * 8 7 6 10 10 C 1.38814 * 119.99990 * 213.59118 * 8 7 6 11 11 N 1.31622 * 119.99938 * 24.06833 * 10 8 7 12 12 Si 1.86791 * 119.99858 * 204.07141 * 10 8 7 13 13 H 1.48500 * 109.47279 * 90.00164 * 12 10 8 14 14 H 1.48502 * 109.47094 * 209.99801 * 12 10 8 15 15 H 1.48500 * 109.47248 * 329.99645 * 12 10 8 16 16 C 1.46505 * 120.00066 * 90.00238 * 7 6 5 17 17 C 1.50700 * 109.47165 * 264.67586 * 16 7 6 18 18 C 1.38126 * 123.88721 * 94.99604 * 17 16 7 19 19 N 1.30413 * 112.23153 * 180.23309 * 18 17 16 20 20 S 1.56003 * 108.39472 * 359.59949 * 19 18 17 21 21 N 1.30416 * 123.88538 * 274.95794 * 17 16 7 22 22 H 1.08990 * 109.47118 * 300.00044 * 1 2 3 23 23 H 1.09000 * 109.47012 * 60.00545 * 1 2 3 24 24 H 1.09009 * 109.46612 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46779 * 60.00546 * 5 3 2 26 26 H 1.09001 * 109.47531 * 300.00038 * 5 3 2 27 27 H 1.09002 * 109.46970 * 60.00841 * 6 5 3 28 28 H 1.08993 * 109.47314 * 299.99963 * 6 5 3 29 29 H 0.97001 * 120.00175 * 179.97438 * 11 10 8 30 30 H 1.08995 * 109.47023 * 144.67869 * 16 7 6 31 31 H 1.09004 * 109.46727 * 24.67291 * 16 7 6 32 32 H 1.08003 * 123.88349 * 359.96977 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0000 2.7422 -0.0002 7 7 5.4630 2.8189 -0.0002 8 6 6.1468 2.8553 1.1857 9 1 5.7697 2.3178 2.0431 10 6 7.3246 3.5832 1.2857 11 7 7.5500 4.5864 0.4640 12 14 8.5896 3.1387 2.5862 13 1 9.5428 2.1448 2.0304 14 1 9.3298 4.3596 2.9945 15 1 7.9021 2.5584 3.7676 16 6 6.1945 2.8567 -1.2690 17 6 6.6335 1.4629 -1.6375 18 6 5.9223 0.6283 -2.4775 19 7 6.5068 -0.5267 -2.6361 20 16 7.8272 -0.5285 -1.8053 21 7 7.7289 0.9061 -1.2005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 3.9563 0.7807 -0.8892 26 1 3.9558 0.7810 0.8908 27 1 3.6100 3.2368 0.8894 28 1 3.6107 3.2357 -0.8906 29 1 8.3729 5.0953 0.5341 30 1 7.0699 3.4976 -1.1647 31 1 5.5458 3.2519 -2.0508 32 1 4.9874 0.8994 -2.9454 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879471680.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:53 Heat of formation + Delta-G solvation = -6.356565 kcal Electronic energy + Delta-G solvation = -18877.200089 eV Core-core repulsion = 15773.144149 eV Total energy + Delta-G solvation = -3104.055940 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.23405 -40.00507 -36.54927 -35.75843 -32.74284 -32.17064 -30.23116 -28.06142 -27.29275 -24.74875 -23.98029 -21.55975 -20.23011 -19.85918 -18.58008 -17.40015 -16.88439 -16.31007 -16.27517 -15.13222 -14.94631 -14.77685 -14.11601 -13.72128 -13.41521 -13.21074 -13.01960 -12.25761 -12.15301 -11.71716 -11.55741 -11.25829 -10.89150 -10.70122 -10.66317 -10.55651 -10.37329 -10.20555 -10.15791 -10.07804 -10.01008 -9.94375 -8.64077 -8.27794 -6.88654 -5.93680 -3.47879 1.39392 2.24495 2.49150 2.51863 2.86091 2.97917 3.37501 3.43395 3.46818 4.43072 5.05895 5.12554 5.17621 5.18751 5.31510 5.46783 5.54405 5.59235 5.67044 5.83408 6.06409 6.13313 6.22063 6.49590 6.59251 6.60855 6.87799 7.34830 7.57584 7.71314 8.00895 8.32657 8.98291 9.63816 10.13229 11.07816 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.014108 B = 0.007655 C = 0.005624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.208563 B = 3656.929955 C = 4977.148380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.464 3.536 4 O -0.511 6.511 5 C -0.137 4.137 6 C 0.159 3.841 7 N -0.561 5.561 8 C -0.269 4.269 9 H 0.064 0.936 10 C 0.030 3.970 11 N -0.876 5.876 12 Si 0.899 3.101 13 H -0.281 1.281 14 H -0.291 1.291 15 H -0.278 1.278 16 C 0.204 3.796 17 C 0.071 3.929 18 C 0.025 3.975 19 N -0.579 5.579 20 S 0.579 5.421 21 N -0.533 5.533 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.100 0.900 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.258 0.742 30 H 0.123 0.877 31 H 0.057 0.943 32 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.361 -8.290 -4.485 11.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.307 3.693 4 O -0.398 6.398 5 C -0.178 4.178 6 C 0.031 3.969 7 N -0.279 5.279 8 C -0.398 4.398 9 H 0.082 0.918 10 C -0.172 4.172 11 N -0.518 5.518 12 Si 0.728 3.272 13 H -0.207 1.207 14 H -0.218 1.218 15 H -0.204 1.204 16 C 0.072 3.928 17 C -0.107 4.107 18 C -0.173 4.173 19 N -0.420 5.420 20 S 0.623 5.377 21 N -0.374 5.374 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.114 0.886 25 H 0.112 0.888 26 H 0.118 0.882 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.140 0.860 31 H 0.075 0.925 32 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -4.934 -9.388 -4.239 11.422 hybrid contribution -0.877 0.784 0.440 1.256 sum -5.811 -8.605 -3.798 11.056 Atomic orbital electron populations 1.23178 0.77339 1.03123 1.02300 1.86576 1.22798 1.34547 1.84433 1.24338 0.92626 0.80847 0.71519 1.90632 1.67410 1.36280 1.45514 1.22462 0.85040 1.05098 1.05164 1.20763 0.84966 0.89636 1.01506 1.43808 0.99116 1.82729 1.02268 1.18963 1.05751 1.25434 0.89648 0.91795 1.24972 1.00096 0.94201 0.97964 1.69910 1.25570 1.16701 1.39574 0.86372 0.81978 0.77791 0.81086 1.20745 1.21756 1.20376 1.19951 0.99986 0.86101 0.86725 1.24361 0.88786 1.03605 0.93950 1.23814 1.03217 0.88439 1.01828 1.72340 1.14829 1.27064 1.27798 1.78952 1.18031 1.13801 1.26908 1.72667 1.25103 1.11915 1.27742 0.92149 0.92147 0.88632 0.88798 0.88160 0.91561 0.93087 0.93160 0.85959 0.92480 0.79255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 101.05 1.07 1.44 16 2 O -0.37 -5.35 10.57 -39.27 -0.41 -5.77 16 3 C 0.46 7.59 7.96 36.00 0.29 7.88 16 4 O -0.51 -9.40 15.73 -18.75 -0.29 -9.69 16 5 C -0.14 -2.31 6.14 -27.88 -0.17 -2.48 16 6 C 0.16 3.08 5.00 -4.04 -0.02 3.06 16 7 N -0.56 -12.66 2.45 -174.60 -0.43 -13.09 16 8 C -0.27 -6.87 9.44 -15.05 -0.14 -7.01 16 9 H 0.06 1.65 7.94 -52.49 -0.42 1.24 16 10 C 0.03 0.78 4.97 -17.43 -0.09 0.70 16 11 N -0.88 -23.81 11.30 55.49 0.63 -23.18 16 12 Si 0.90 21.41 29.62 -169.99 -5.03 16.38 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 C 0.20 4.35 5.87 -5.19 -0.03 4.32 16 17 C 0.07 1.41 6.38 -83.23 -0.53 0.88 16 18 C 0.02 0.41 9.90 -18.20 -0.18 0.23 16 19 N -0.58 -9.96 11.45 18.94 0.22 -9.75 16 20 S 0.58 9.75 23.71 -107.50 -2.55 7.20 16 21 N -0.53 -11.14 11.45 22.70 0.26 -10.88 16 22 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 23 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 24 H 0.10 0.74 8.14 -51.92 -0.42 0.32 16 25 H 0.09 1.51 6.39 -51.93 -0.33 1.18 16 26 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 27 H 0.07 1.38 8.00 -51.93 -0.42 0.96 16 28 H 0.05 0.94 7.81 -51.93 -0.41 0.54 16 29 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.12 3.05 5.33 -51.93 -0.28 2.77 16 31 H 0.06 1.05 7.82 -51.93 -0.41 0.65 16 32 H 0.19 2.60 7.97 -52.48 -0.42 2.18 16 LS Contribution 295.93 15.07 4.46 4.46 Total: -1.00 -29.87 295.93 -6.46 -36.33 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -3.50 Total: -1.03 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 0.19 Total: 9.02 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: 0.68 Total: -56.89 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.71 Total: -15.46 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Atomic # 16 Polarization: 9.75 SS G_CDS: -2.55 Total: 7.20 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.87 -6.46 -36.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879471680.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.974 kcal (2) G-P(sol) polarization free energy of solvation -29.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds