Wall clock time and date at job start Mon Mar 30 2020 00:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34235 * 116.99748 * 2 1 4 4 O 1.20820 * 119.99798 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99657 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.46585 * 179.97438 * 5 3 2 7 7 N 1.46500 * 109.46859 * 180.02562 * 6 5 3 8 8 C 1.36945 * 120.00198 * 270.00268 * 7 6 5 9 9 H 1.07995 * 119.99520 * 33.59033 * 8 7 6 10 10 C 1.38814 * 119.99990 * 213.59118 * 8 7 6 11 11 N 1.31622 * 119.99938 * 24.06833 * 10 8 7 12 12 Si 1.86791 * 119.99858 * 204.07141 * 10 8 7 13 13 H 1.48500 * 109.47279 * 90.00164 * 12 10 8 14 14 H 1.48502 * 109.47094 * 209.99801 * 12 10 8 15 15 H 1.48500 * 109.47248 * 329.99645 * 12 10 8 16 16 C 1.46505 * 120.00066 * 90.00238 * 7 6 5 17 17 C 1.50700 * 109.47165 * 264.67586 * 16 7 6 18 18 C 1.38126 * 123.88721 * 94.99604 * 17 16 7 19 19 N 1.30413 * 112.23153 * 180.23309 * 18 17 16 20 20 S 1.56003 * 108.39472 * 359.59949 * 19 18 17 21 21 N 1.30416 * 123.88538 * 274.95794 * 17 16 7 22 22 H 1.08990 * 109.47118 * 300.00044 * 1 2 3 23 23 H 1.09000 * 109.47012 * 60.00545 * 1 2 3 24 24 H 1.09009 * 109.46612 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46779 * 60.00546 * 5 3 2 26 26 H 1.09001 * 109.47531 * 300.00038 * 5 3 2 27 27 H 1.09002 * 109.46970 * 60.00841 * 6 5 3 28 28 H 1.08993 * 109.47314 * 299.99963 * 6 5 3 29 29 H 0.97001 * 120.00175 * 179.97438 * 11 10 8 30 30 H 1.08995 * 109.47023 * 144.67869 * 16 7 6 31 31 H 1.09004 * 109.46727 * 24.67291 * 16 7 6 32 32 H 1.08003 * 123.88349 * 359.96977 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0000 2.7422 -0.0002 7 7 5.4630 2.8189 -0.0002 8 6 6.1468 2.8553 1.1857 9 1 5.7697 2.3178 2.0431 10 6 7.3246 3.5832 1.2857 11 7 7.5500 4.5864 0.4640 12 14 8.5896 3.1387 2.5862 13 1 9.5428 2.1448 2.0304 14 1 9.3298 4.3596 2.9945 15 1 7.9021 2.5584 3.7676 16 6 6.1945 2.8567 -1.2690 17 6 6.6335 1.4629 -1.6375 18 6 5.9223 0.6283 -2.4775 19 7 6.5068 -0.5267 -2.6361 20 16 7.8272 -0.5285 -1.8053 21 7 7.7289 0.9061 -1.2005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 3.9563 0.7807 -0.8892 26 1 3.9558 0.7810 0.8908 27 1 3.6100 3.2368 0.8894 28 1 3.6107 3.2357 -0.8906 29 1 8.3729 5.0953 0.5341 30 1 7.0699 3.4976 -1.1647 31 1 5.5458 3.2519 -2.0508 32 1 4.9874 0.8994 -2.9454 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879471680.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:52 Heat of formation + Delta-G solvation = -25.427615 kcal Electronic energy + Delta-G solvation = -18878.027072 eV Core-core repulsion = 15773.144149 eV Total energy + Delta-G solvation = -3104.882922 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.58594 -41.35133 -37.95077 -37.26051 -34.20445 -33.94070 -31.81832 -29.53770 -28.48986 -26.44948 -25.39349 -23.09071 -21.60394 -21.40134 -19.98621 -18.84971 -18.49770 -17.55570 -17.52229 -16.69508 -16.45947 -16.35015 -15.62897 -15.33760 -14.91158 -14.64578 -14.30224 -13.68481 -13.35995 -13.23148 -13.02926 -12.81535 -12.77310 -12.45944 -12.14924 -11.96776 -11.85820 -11.74770 -11.65365 -11.59570 -11.53406 -11.45623 -10.56108 -9.66668 -8.73102 -7.87421 -5.43952 -0.01993 0.87530 1.11243 1.20518 1.40949 1.46660 1.51716 1.53566 1.82081 2.52498 3.27336 3.66205 3.87800 4.00491 4.17666 4.28613 4.34674 4.36759 4.41179 4.61167 4.69131 4.73036 4.76587 5.00903 5.10710 5.27640 5.42945 5.63283 5.73298 6.06090 6.43665 6.76992 7.11250 7.78686 8.25561 9.10161 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.014108 B = 0.007655 C = 0.005624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.208563 B = 3656.929955 C = 4977.148380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.369 6.369 3 C 0.472 3.528 4 O -0.535 6.535 5 C -0.123 4.123 6 C 0.162 3.838 7 N -0.575 5.575 8 C -0.266 4.266 9 H 0.055 0.945 10 C -0.010 4.010 11 N -0.902 5.902 12 Si 0.940 3.060 13 H -0.291 1.291 14 H -0.293 1.293 15 H -0.272 1.272 16 C 0.207 3.793 17 C 0.062 3.938 18 C 0.035 3.965 19 N -0.582 5.582 20 S 0.635 5.365 21 N -0.583 5.583 22 H 0.059 0.941 23 H 0.064 0.936 24 H 0.130 0.870 25 H 0.107 0.893 26 H 0.093 0.907 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.253 0.747 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.511 -10.145 -5.349 13.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.286 6.286 3 C 0.317 3.683 4 O -0.424 6.424 5 C -0.163 4.163 6 C 0.036 3.964 7 N -0.294 5.294 8 C -0.396 4.396 9 H 0.073 0.927 10 C -0.210 4.210 11 N -0.545 5.545 12 Si 0.770 3.230 13 H -0.218 1.218 14 H -0.220 1.220 15 H -0.197 1.197 16 C 0.075 3.925 17 C -0.116 4.116 18 C -0.161 4.161 19 N -0.424 5.424 20 S 0.679 5.321 21 N -0.426 5.426 22 H 0.078 0.922 23 H 0.083 0.917 24 H 0.148 0.852 25 H 0.125 0.875 26 H 0.111 0.889 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -6.116 -11.268 -5.100 13.798 hybrid contribution -0.570 1.229 0.645 1.500 sum -6.686 -10.039 -4.455 12.858 Atomic orbital electron populations 1.23540 0.74970 1.05559 1.02558 1.86540 1.25042 1.33151 1.83839 1.24035 0.92274 0.81067 0.70973 1.90630 1.67851 1.37177 1.46778 1.22118 0.85820 1.02951 1.05461 1.20699 0.83325 0.91354 1.01014 1.43874 1.00211 1.83466 1.01833 1.19050 1.05772 1.24209 0.90619 0.92700 1.25421 1.01473 0.94597 0.99461 1.70009 1.25645 1.17786 1.41059 0.85702 0.80383 0.77056 0.79890 1.21799 1.21969 1.19735 1.19722 0.99049 0.86786 0.86896 1.24103 0.89238 1.03168 0.95077 1.24024 1.03769 0.87528 1.00814 1.72363 1.15075 1.27100 1.27888 1.78657 1.17221 1.10807 1.25400 1.72422 1.26386 1.14583 1.29221 0.92184 0.91687 0.85161 0.87492 0.88851 0.93683 0.91951 0.93759 0.89529 0.89950 0.76012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.70 16 2 O -0.37 -9.82 10.57 -51.46 -0.54 -10.37 16 3 C 0.47 14.60 7.96 71.24 0.57 15.17 16 4 O -0.53 -18.95 15.73 21.98 0.35 -18.61 16 5 C -0.12 -3.95 6.14 29.85 0.18 -3.77 16 6 C 0.16 6.20 5.00 86.38 0.43 6.63 16 7 N -0.57 -25.80 2.45 -706.33 -1.73 -27.53 16 8 C -0.27 -13.74 9.44 84.03 0.79 -12.95 16 9 H 0.06 2.87 7.94 -2.91 -0.02 2.85 16 10 C -0.01 -0.55 4.97 84.86 0.42 -0.13 16 11 N -0.90 -50.12 11.30 21.65 0.24 -49.88 16 12 Si 0.94 44.56 29.62 68.60 2.03 46.59 16 13 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 14 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 15 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 16 C 0.21 8.70 5.87 85.63 0.50 9.20 16 17 C 0.06 2.35 6.38 42.74 0.27 2.62 16 18 C 0.03 1.07 9.90 84.88 0.84 1.91 16 19 N -0.58 -18.25 11.45 -93.99 -1.08 -19.32 16 20 S 0.63 20.01 23.71 -56.49 -1.34 18.67 16 21 N -0.58 -23.76 11.45 -82.10 -0.94 -24.70 16 22 H 0.06 1.15 8.13 -2.39 -0.02 1.13 16 23 H 0.06 1.18 8.13 -2.39 -0.02 1.16 16 24 H 0.13 1.54 8.14 -2.38 -0.02 1.52 16 25 H 0.11 3.16 6.39 -2.39 -0.02 3.14 16 26 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 27 H 0.04 1.88 8.00 -2.39 -0.02 1.87 16 28 H 0.06 2.22 7.81 -2.39 -0.02 2.20 16 29 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 30 H 0.09 4.39 5.33 -2.39 -0.01 4.37 16 31 H 0.08 2.94 7.82 -2.39 -0.02 2.92 16 32 H 0.22 5.17 7.97 -2.91 -0.02 5.15 16 Total: -1.00 -63.95 295.93 3.34 -60.61 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: 1.14 Total: 4.15 kcal Atomic # 6 Polarization: 15.17 SS G_CDS: 5.21 Total: 20.38 kcal Atomic # 7 Polarization: -117.93 SS G_CDS: -3.50 Total: -121.43 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -0.20 Total: -28.97 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 16 Polarization: 20.01 SS G_CDS: -1.34 Total: 18.67 kcal Total: -63.95 3.34 -60.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879471680.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.181 kcal (2) G-P(sol) polarization free energy of solvation -63.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds