Wall clock time and date at job start Mon Mar 30 2020 00:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34227 * 116.99894 * 2 1 4 4 O 1.20829 * 119.99612 * 359.97438 * 3 2 1 5 5 C 1.50690 * 120.00207 * 180.02562 * 3 2 1 6 6 C 1.52996 * 109.47374 * 179.97438 * 5 3 2 7 7 N 1.46506 * 109.47299 * 179.97438 * 6 5 3 8 8 C 1.36936 * 119.99849 * 269.42660 * 7 6 5 9 9 H 1.07998 * 120.00195 * 326.03730 * 8 7 6 10 10 C 1.38813 * 119.99553 * 146.04397 * 8 7 6 11 11 N 1.31617 * 120.00098 * 336.62202 * 10 8 7 12 12 Si 1.86804 * 119.99991 * 156.62278 * 10 8 7 13 13 H 1.48498 * 109.46944 * 359.97438 * 12 10 8 14 14 H 1.48505 * 109.46985 * 119.99436 * 12 10 8 15 15 H 1.48501 * 109.47094 * 239.99581 * 12 10 8 16 16 C 1.46499 * 119.99598 * 89.42936 * 7 6 5 17 17 C 1.50693 * 109.47553 * 90.00083 * 16 7 6 18 18 C 1.35344 * 127.92404 * 89.70017 * 17 16 7 19 19 N 1.31751 * 112.46653 * 179.85269 * 18 17 16 20 20 N 1.27570 * 118.26837 * 0.47425 * 19 18 17 21 21 S 1.56508 * 109.22810 * 359.73316 * 20 19 18 22 22 H 1.09001 * 109.47115 * 299.99982 * 1 2 3 23 23 H 1.08998 * 109.47129 * 60.00575 * 1 2 3 24 24 H 1.08997 * 109.46689 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47380 * 59.99666 * 5 3 2 26 26 H 1.09000 * 109.47349 * 299.99872 * 5 3 2 27 27 H 1.09001 * 109.47385 * 60.00000 * 6 5 3 28 28 H 1.08997 * 109.47272 * 299.99957 * 6 5 3 29 29 H 0.96998 * 120.00401 * 180.02562 * 11 10 8 30 30 H 1.09000 * 109.47092 * 329.99759 * 16 7 6 31 31 H 1.09007 * 109.46497 * 209.99954 * 16 7 6 32 32 H 1.08000 * 123.76683 * 0.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 7 5.4631 2.8188 -0.0011 8 6 6.1461 2.8670 1.1848 9 1 5.7170 3.3766 2.0349 10 6 7.3902 2.2609 1.2943 11 7 7.7197 1.2826 0.4778 12 14 8.5965 2.8337 2.6004 13 1 7.9896 3.9397 3.3838 14 1 8.9182 1.7026 3.5073 15 1 9.8409 3.3146 1.9481 16 6 6.1952 2.8441 -1.2697 17 6 6.3719 4.2715 -1.7195 18 6 7.3898 5.1151 -1.4295 19 7 7.2375 6.2986 -1.9881 20 7 6.1951 6.5038 -2.6942 21 16 5.3218 5.2051 -2.7136 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 3.9557 0.7810 -0.8908 26 1 3.9564 0.7807 0.8891 27 1 3.6107 3.2365 0.8889 28 1 3.6100 3.2360 -0.8910 29 1 8.5889 0.8589 0.5544 30 1 5.6343 2.2923 -2.0240 31 1 7.1732 2.3822 -1.1340 32 1 8.2340 4.8471 -0.8116 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879472078.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:50 Heat of formation + Delta-G solvation = 0.924620 kcal Electronic energy + Delta-G solvation = -18534.978834 eV Core-core repulsion = 15431.238630 eV Total energy + Delta-G solvation = -3103.740204 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.14460 -40.01545 -36.71014 -35.99290 -32.34795 -32.00663 -29.89452 -27.76851 -27.19354 -24.97387 -24.16670 -21.68632 -20.51981 -19.74227 -18.39052 -17.39782 -16.94147 -16.29991 -16.18821 -15.15314 -14.98138 -14.49384 -14.16510 -13.92269 -13.40204 -13.30679 -12.94835 -12.31838 -12.27058 -11.88435 -11.66558 -11.45960 -11.33002 -11.01321 -10.65869 -10.62793 -10.46262 -10.21617 -10.19810 -10.09627 -9.50086 -9.20138 -8.92273 -8.81060 -7.09599 -6.16884 -3.67359 0.92556 1.83592 2.39953 2.53734 2.93990 3.03606 3.20468 3.31163 3.35010 4.24153 4.93130 5.00735 5.04868 5.15129 5.21065 5.36986 5.53775 5.62169 5.66446 5.72978 5.97880 6.17337 6.40241 6.45428 6.47953 6.59896 6.77479 7.16884 7.54375 8.03414 8.12484 8.41927 8.78283 9.40322 9.93979 10.84705 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.013146 B = 0.007342 C = 0.005039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.440233 B = 3812.794484 C = 5555.775016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.365 6.365 3 C 0.462 3.538 4 O -0.517 6.517 5 C -0.129 4.129 6 C 0.157 3.843 7 N -0.564 5.564 8 C -0.264 4.264 9 H 0.070 0.930 10 C 0.017 3.983 11 N -0.876 5.876 12 Si 0.897 3.103 13 H -0.273 1.273 14 H -0.286 1.286 15 H -0.283 1.283 16 C 0.204 3.796 17 C -0.209 4.209 18 C -0.018 4.018 19 N -0.246 5.246 20 N -0.321 5.321 21 S 0.348 5.652 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.095 0.905 25 H 0.099 0.901 26 H 0.110 0.890 27 H 0.059 0.941 28 H 0.047 0.953 29 H 0.261 0.739 30 H 0.051 0.949 31 H 0.128 0.872 32 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.571 -3.053 -3.563 8.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.282 6.282 3 C 0.306 3.694 4 O -0.405 6.405 5 C -0.170 4.170 6 C 0.030 3.970 7 N -0.282 5.282 8 C -0.393 4.393 9 H 0.087 0.913 10 C -0.185 4.185 11 N -0.517 5.517 12 Si 0.725 3.275 13 H -0.198 1.198 14 H -0.213 1.213 15 H -0.209 1.209 16 C 0.075 3.925 17 C -0.351 4.351 18 C -0.182 4.182 19 N -0.113 5.113 20 N -0.300 5.300 21 S 0.481 5.519 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.114 0.886 25 H 0.117 0.883 26 H 0.129 0.871 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.145 0.855 32 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -8.449 -1.428 -4.598 9.725 hybrid contribution 1.382 -0.670 1.709 2.298 sum -7.067 -2.098 -2.889 7.918 Atomic orbital electron populations 1.23170 0.77509 1.03090 1.02205 1.86588 1.22659 1.34570 1.84370 1.24552 0.92842 0.80787 0.71243 1.90622 1.67560 1.36380 1.45962 1.22327 0.84351 1.04165 1.06117 1.20836 0.84702 0.90784 1.00673 1.43926 0.99870 1.82299 1.02072 1.19211 1.00952 1.28997 0.90189 0.91255 1.25127 1.00144 0.94926 0.98253 1.69918 1.21899 1.20427 1.39436 0.86316 0.81147 0.78718 0.81282 1.19805 1.21291 1.20879 1.19715 1.02567 0.83864 0.86393 1.28985 0.96998 1.08054 1.01035 1.23553 1.02687 0.88283 1.03670 1.71164 1.12595 1.20287 1.07261 1.78753 1.06192 1.22125 1.22919 1.81246 1.29603 1.02354 1.38658 0.92232 0.92233 0.88640 0.88316 0.87139 0.92227 0.93414 0.92840 0.93091 0.85489 0.79013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 101.05 1.07 1.44 16 2 O -0.37 -5.31 10.57 -39.25 -0.41 -5.72 16 3 C 0.46 7.53 7.96 36.00 0.29 7.82 16 4 O -0.52 -9.46 15.73 -18.75 -0.29 -9.75 16 5 C -0.13 -2.17 6.13 -27.89 -0.17 -2.35 16 6 C 0.16 2.95 4.96 -4.04 -0.02 2.93 16 7 N -0.56 -11.94 2.44 -174.61 -0.43 -12.36 16 8 C -0.26 -6.25 9.48 -15.06 -0.14 -6.39 16 9 H 0.07 1.69 7.93 -52.49 -0.42 1.28 16 10 C 0.02 0.41 4.94 -17.43 -0.09 0.33 16 11 N -0.88 -21.37 11.34 55.49 0.63 -20.74 16 12 Si 0.90 19.38 29.61 -169.99 -5.03 14.35 16 13 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 14 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 15 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 16 C 0.20 4.04 5.89 -5.20 -0.03 4.01 16 17 C -0.21 -3.96 6.27 -35.34 -0.22 -4.18 16 18 C -0.02 -0.36 11.53 -18.62 -0.21 -0.57 16 19 N -0.25 -5.02 11.68 29.33 0.34 -4.68 16 20 N -0.32 -6.27 12.54 60.35 0.76 -5.51 16 21 S 0.35 5.90 23.40 -107.50 -2.52 3.39 16 22 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 23 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 24 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.10 1.59 8.14 -51.93 -0.42 1.16 16 26 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 27 H 0.06 1.18 7.99 -51.93 -0.42 0.76 16 28 H 0.05 0.86 8.03 -51.93 -0.42 0.44 16 29 H 0.26 6.21 8.31 -40.82 -0.34 5.87 16 30 H 0.05 0.91 8.07 -51.93 -0.42 0.49 16 31 H 0.13 2.82 5.33 -51.92 -0.28 2.55 16 32 H 0.19 3.65 8.06 -52.49 -0.42 3.23 16 LS Contribution 300.76 15.07 4.53 4.53 Total: -1.00 -27.05 300.76 -5.57 -32.62 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -3.61 Total: 0.85 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: 0.47 Total: 3.04 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 1.30 Total: -43.30 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.71 Total: -15.47 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.35 kcal Atomic # 16 Polarization: 5.90 SS G_CDS: -2.52 Total: 3.39 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.05 -5.57 -32.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879472078.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.546 kcal (2) G-P(sol) polarization free energy of solvation -27.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds