Wall clock time and date at job start Mon Mar 30 2020 00:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34227 * 116.99894 * 2 1 4 4 O 1.20829 * 119.99612 * 359.97438 * 3 2 1 5 5 C 1.50690 * 120.00207 * 180.02562 * 3 2 1 6 6 C 1.52996 * 109.47374 * 179.97438 * 5 3 2 7 7 N 1.46506 * 109.47299 * 179.97438 * 6 5 3 8 8 C 1.36936 * 119.99849 * 269.42660 * 7 6 5 9 9 H 1.07998 * 120.00195 * 326.03730 * 8 7 6 10 10 C 1.38813 * 119.99553 * 146.04397 * 8 7 6 11 11 N 1.31617 * 120.00098 * 336.62202 * 10 8 7 12 12 Si 1.86804 * 119.99991 * 156.62278 * 10 8 7 13 13 H 1.48498 * 109.46944 * 359.97438 * 12 10 8 14 14 H 1.48505 * 109.46985 * 119.99436 * 12 10 8 15 15 H 1.48501 * 109.47094 * 239.99581 * 12 10 8 16 16 C 1.46499 * 119.99598 * 89.42936 * 7 6 5 17 17 C 1.50693 * 109.47553 * 90.00083 * 16 7 6 18 18 C 1.35344 * 127.92404 * 89.70017 * 17 16 7 19 19 N 1.31751 * 112.46653 * 179.85269 * 18 17 16 20 20 N 1.27570 * 118.26837 * 0.47425 * 19 18 17 21 21 S 1.56508 * 109.22810 * 359.73316 * 20 19 18 22 22 H 1.09001 * 109.47115 * 299.99982 * 1 2 3 23 23 H 1.08998 * 109.47129 * 60.00575 * 1 2 3 24 24 H 1.08997 * 109.46689 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47380 * 59.99666 * 5 3 2 26 26 H 1.09000 * 109.47349 * 299.99872 * 5 3 2 27 27 H 1.09001 * 109.47385 * 60.00000 * 6 5 3 28 28 H 1.08997 * 109.47272 * 299.99957 * 6 5 3 29 29 H 0.96998 * 120.00401 * 180.02562 * 11 10 8 30 30 H 1.09000 * 109.47092 * 329.99759 * 16 7 6 31 31 H 1.09007 * 109.46497 * 209.99954 * 16 7 6 32 32 H 1.08000 * 123.76683 * 0.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 7 5.4631 2.8188 -0.0011 8 6 6.1461 2.8670 1.1848 9 1 5.7170 3.3766 2.0349 10 6 7.3902 2.2609 1.2943 11 7 7.7197 1.2826 0.4778 12 14 8.5965 2.8337 2.6004 13 1 7.9896 3.9397 3.3838 14 1 8.9182 1.7026 3.5073 15 1 9.8409 3.3146 1.9481 16 6 6.1952 2.8441 -1.2697 17 6 6.3719 4.2715 -1.7195 18 6 7.3898 5.1151 -1.4295 19 7 7.2375 6.2986 -1.9881 20 7 6.1951 6.5038 -2.6942 21 16 5.3218 5.2051 -2.7136 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 3.9557 0.7810 -0.8908 26 1 3.9564 0.7807 0.8891 27 1 3.6107 3.2365 0.8889 28 1 3.6100 3.2360 -0.8910 29 1 8.5889 0.8589 0.5544 30 1 5.6343 2.2923 -2.0240 31 1 7.1732 2.3822 -1.1340 32 1 8.2340 4.8471 -0.8116 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879472078.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:50 Heat of formation + Delta-G solvation = -14.155956 kcal Electronic energy + Delta-G solvation = -18535.632776 eV Core-core repulsion = 15431.238630 eV Total energy + Delta-G solvation = -3104.394147 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.56651 -41.38468 -38.18504 -37.34337 -33.97324 -33.58615 -31.40223 -29.13587 -28.45334 -26.60031 -25.62595 -23.21299 -21.94265 -21.20757 -19.89119 -18.83615 -18.45497 -17.52131 -17.41315 -16.83878 -16.50244 -16.08655 -15.67199 -15.37966 -14.91297 -14.66330 -14.21828 -13.74694 -13.61040 -13.29449 -13.09304 -13.01656 -12.78541 -12.68439 -12.33213 -12.11307 -11.82458 -11.79315 -11.67941 -11.46623 -10.99618 -10.70241 -10.58433 -10.40897 -8.80639 -7.95153 -5.48648 -0.57197 0.36162 0.91288 1.24890 1.41123 1.46478 1.54786 1.60862 1.87596 2.49462 3.18453 3.42153 3.60146 4.01284 4.11464 4.23300 4.24887 4.36644 4.38372 4.48988 4.73041 4.76614 4.86814 4.93925 5.03915 5.21888 5.45615 5.54628 5.69754 6.36701 6.80622 6.90008 7.04522 7.68614 8.19779 9.04056 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.013146 B = 0.007342 C = 0.005039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.440233 B = 3812.794484 C = 5555.775016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.369 6.369 3 C 0.471 3.529 4 O -0.539 6.539 5 C -0.119 4.119 6 C 0.159 3.841 7 N -0.575 5.575 8 C -0.271 4.271 9 H 0.055 0.945 10 C -0.010 4.010 11 N -0.894 5.894 12 Si 0.940 3.060 13 H -0.279 1.279 14 H -0.290 1.290 15 H -0.284 1.284 16 C 0.210 3.790 17 C -0.227 4.227 18 C -0.022 4.022 19 N -0.268 5.268 20 N -0.343 5.343 21 S 0.436 5.564 22 H 0.059 0.941 23 H 0.064 0.936 24 H 0.130 0.870 25 H 0.109 0.891 26 H 0.098 0.902 27 H 0.044 0.956 28 H 0.058 0.942 29 H 0.259 0.741 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.793 -3.405 -4.428 10.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.316 3.684 4 O -0.429 6.429 5 C -0.160 4.160 6 C 0.033 3.967 7 N -0.294 5.294 8 C -0.402 4.402 9 H 0.073 0.927 10 C -0.210 4.210 11 N -0.536 5.536 12 Si 0.769 3.231 13 H -0.204 1.204 14 H -0.217 1.217 15 H -0.210 1.210 16 C 0.080 3.920 17 C -0.368 4.368 18 C -0.186 4.186 19 N -0.134 5.134 20 N -0.322 5.322 21 S 0.570 5.430 22 H 0.078 0.922 23 H 0.082 0.918 24 H 0.148 0.852 25 H 0.127 0.873 26 H 0.117 0.883 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.123 0.877 32 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -9.682 -1.789 -5.465 11.261 hybrid contribution 1.606 -0.559 1.887 2.540 sum -8.077 -2.348 -3.578 9.141 Atomic orbital electron populations 1.23530 0.75110 1.05535 1.02466 1.86552 1.24942 1.33257 1.83782 1.24228 0.92475 0.81006 0.70721 1.90615 1.67962 1.37191 1.47174 1.22055 0.85189 1.02649 1.06060 1.20787 0.83496 0.91998 1.00429 1.43977 1.00628 1.82986 1.01778 1.19187 1.01368 1.28696 0.90918 0.92719 1.25468 1.00927 0.95153 0.99462 1.69978 1.21958 1.21177 1.40489 0.85660 0.79821 0.77856 0.79772 1.20405 1.21700 1.20981 1.19564 1.01681 0.84336 0.86380 1.28926 0.97940 1.07857 1.02055 1.23641 1.03036 0.88381 1.03546 1.71223 1.13277 1.20723 1.08173 1.78521 1.06642 1.23935 1.23121 1.80881 1.26692 0.99698 1.35764 0.92234 0.91769 0.85180 0.87250 0.88348 0.93721 0.92324 0.93085 0.90993 0.87695 0.79131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.56 113.37 1.20 1.70 16 2 O -0.37 -9.98 10.57 -51.38 -0.54 -10.52 16 3 C 0.47 14.68 7.96 71.23 0.57 15.24 16 4 O -0.54 -18.99 15.73 21.95 0.35 -18.64 16 5 C -0.12 -3.89 6.13 29.84 0.18 -3.71 16 6 C 0.16 5.84 4.96 86.38 0.43 6.27 16 7 N -0.57 -24.03 2.44 -706.35 -1.72 -25.75 16 8 C -0.27 -12.91 9.48 84.03 0.80 -12.12 16 9 H 0.06 2.72 7.93 -2.91 -0.02 2.70 16 10 C -0.01 -0.48 4.94 84.86 0.42 -0.06 16 11 N -0.89 -43.70 11.34 21.65 0.25 -43.45 16 12 Si 0.94 40.09 29.61 68.60 2.03 42.12 16 13 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 14 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 15 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 16 C 0.21 8.08 5.89 85.63 0.50 8.58 16 17 C -0.23 -8.26 6.27 25.02 0.16 -8.10 16 18 C -0.02 -0.84 11.53 84.04 0.97 0.13 16 19 N -0.27 -10.65 11.68 -61.13 -0.71 -11.36 16 20 N -0.34 -12.77 12.54 37.02 0.46 -12.31 16 21 S 0.44 13.70 23.40 -56.49 -1.32 12.38 16 22 H 0.06 1.15 8.13 -2.39 -0.02 1.13 16 23 H 0.06 1.18 8.13 -2.39 -0.02 1.16 16 24 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 26 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 27 H 0.04 1.76 7.99 -2.39 -0.02 1.74 16 28 H 0.06 1.99 8.03 -2.39 -0.02 1.98 16 29 H 0.26 12.36 8.31 -92.71 -0.77 11.59 16 30 H 0.07 2.42 8.07 -2.39 -0.02 2.40 16 31 H 0.11 4.63 5.33 -2.38 -0.01 4.62 16 32 H 0.19 7.27 8.06 -2.91 -0.02 7.25 16 Total: -1.00 -56.26 300.76 5.14 -51.12 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 1.14 Total: 8.47 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 5.22 Total: 7.94 kcal Atomic # 7 Polarization: -91.14 SS G_CDS: -1.72 Total: -92.87 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.20 Total: -29.16 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.12 kcal Atomic # 16 Polarization: 13.70 SS G_CDS: -1.32 Total: 12.38 kcal Total: -56.26 5.14 -51.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879472078.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.962 kcal (2) G-P(sol) polarization free energy of solvation -56.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds