Wall clock time and date at job start Mon Mar 30 2020 00:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99708 * 2 1 4 4 H 1.48494 * 109.47121 * 270.00000 * 3 2 1 5 5 H 1.48495 * 109.47230 * 30.00229 * 3 2 1 6 6 H 1.48502 * 109.46831 * 150.00397 * 3 2 1 7 7 C 1.37883 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99824 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99963 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.46914 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00111 * 179.97438 * 10 9 7 12 12 O 1.21587 * 120.00009 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00148 * 179.97438 * 11 10 9 14 14 C 1.39979 * 119.99881 * 184.67751 * 13 11 10 15 15 C 1.38882 * 120.48871 * 145.04126 * 14 13 11 16 16 N 1.31795 * 120.66446 * 180.02562 * 15 14 13 17 17 C 1.31881 * 121.79202 * 359.97438 * 16 15 14 18 18 C 1.38227 * 120.92080 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.37802 * 180.02562 * 18 17 16 20 20 F 1.39902 * 109.47129 * 119.98471 * 19 18 17 21 21 F 1.39899 * 109.47224 * 239.97846 * 19 18 17 22 22 C 1.38547 * 119.23854 * 0.02562 * 18 17 16 23 23 H 0.96997 * 120.00118 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.46959 * 60.00416 * 9 7 2 25 25 H 1.09006 * 109.47080 * 300.00014 * 9 7 2 26 26 H 0.97007 * 120.00287 * 0.02562 * 10 9 7 27 27 H 0.96997 * 119.99986 * 4.68045 * 13 11 10 28 28 H 1.08004 * 119.66773 * 359.97438 * 15 14 13 29 29 H 1.08002 * 119.53700 * 180.02562 * 17 16 15 30 30 H 1.09001 * 109.47604 * 359.97438 * 19 18 17 31 31 H 1.07999 * 120.81910 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7539 -4.8833 0.0000 12 8 0.5585 -5.1056 0.0000 13 7 2.6298 -5.9077 -0.0005 14 6 2.1662 -7.2248 -0.0989 15 6 2.8983 -8.1796 -0.7925 16 7 2.4648 -9.4206 -0.8877 17 6 1.3310 -9.8048 -0.3345 18 6 0.5469 -8.9122 0.3719 19 6 -0.7463 -9.3646 0.9995 20 9 -0.6889 -9.1631 2.3828 21 9 -1.8075 -8.6265 0.4645 22 6 0.9637 -7.5967 0.4964 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 3.1568 -3.4354 -0.0002 27 1 3.5813 -5.7322 0.0673 28 1 3.8319 -7.9022 -1.2593 29 1 1.0105 -10.8313 -0.4350 30 1 -0.8997 -10.4237 0.7925 31 1 0.3713 -6.8780 1.0431 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880910538.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:57:08 Heat of formation + Delta-G solvation = -95.450123 kcal Electronic energy + Delta-G solvation = -19844.641019 eV Core-core repulsion = 16182.881306 eV Total energy + Delta-G solvation = -3661.759713 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.087 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.03868 -47.02866 -40.80691 -39.17646 -35.16437 -34.29310 -33.08828 -32.47868 -30.23021 -27.17410 -26.66048 -24.09622 -22.81846 -22.05056 -20.53131 -18.61709 -18.02168 -17.49713 -17.26782 -17.05827 -16.38251 -15.91667 -15.71861 -14.95048 -14.80089 -14.17801 -14.04829 -13.78165 -13.39380 -13.30525 -13.19349 -13.04639 -12.64442 -12.13955 -12.07093 -11.43147 -11.04285 -10.99280 -10.77477 -10.38948 -10.01968 -9.91858 -9.47389 -9.41618 -8.84208 -8.45413 -7.94263 -6.22658 -4.30391 0.71924 1.12830 2.87436 3.20703 3.27308 3.29452 3.37934 3.52113 3.73972 3.98278 4.24519 4.32286 4.37315 4.68976 4.81101 4.86774 4.92001 5.13678 5.14641 5.29500 5.84853 6.03654 6.10516 6.72015 6.82177 7.25855 7.38620 7.43348 7.68271 7.69841 7.90260 8.55555 8.72752 9.02359 9.36404 10.87428 Molecular weight = 271.09amu Principal moments of inertia in cm(-1) A = 0.029241 B = 0.003829 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.317814 B = 7311.681668 C = 8018.429629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.265 3.735 10 N -0.717 5.717 11 C 0.689 3.311 12 O -0.580 6.580 13 N -0.690 5.690 14 C 0.132 3.868 15 C 0.085 3.915 16 N -0.465 5.465 17 C 0.103 3.897 18 C -0.207 4.207 19 C 0.321 3.679 20 F -0.199 7.199 21 F -0.194 7.194 22 C -0.040 4.040 23 H 0.267 0.733 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.390 0.610 27 H 0.408 0.592 28 H 0.162 0.838 29 H 0.161 0.839 30 H 0.122 0.878 31 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.167 -18.621 0.755 19.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.144 3.856 10 N -0.368 5.368 11 C 0.389 3.611 12 O -0.458 6.458 13 N -0.339 5.339 14 C 0.033 3.967 15 C -0.075 4.075 16 N -0.172 5.172 17 C -0.056 4.056 18 C -0.211 4.211 19 C 0.267 3.733 20 F -0.180 7.180 21 F -0.175 7.175 22 C -0.069 4.069 23 H 0.077 0.923 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.223 0.777 27 H 0.244 0.756 28 H 0.180 0.820 29 H 0.178 0.822 30 H 0.139 0.861 31 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.356 -19.093 0.305 19.586 hybrid contribution 0.750 1.921 0.510 2.125 sum 5.107 -17.172 0.816 17.933 Atomic orbital electron populations 1.69972 1.06123 1.27472 1.48516 1.24945 0.94925 0.99471 0.94582 0.86384 0.79579 0.82507 0.78256 1.20419 1.20943 1.19734 1.21182 0.93292 0.90251 1.53706 0.91826 1.19104 0.87686 0.80809 0.97985 1.45796 1.11308 1.03961 1.75746 1.16199 0.85078 0.81133 0.78718 1.90907 1.13847 1.83567 1.57446 1.42745 1.10340 1.02990 1.77789 1.18546 0.95935 0.85173 0.97058 1.22730 1.00689 0.88455 0.95632 1.67708 1.13965 1.17068 1.18480 1.22410 0.90013 0.99399 0.93736 1.21350 0.98782 0.96006 1.04927 1.20227 0.82564 0.95865 0.74693 1.93025 1.96625 1.96586 1.31782 1.93063 1.58344 1.80263 1.85821 1.21731 0.95499 0.94845 0.94801 0.92320 0.95368 0.95360 0.77727 0.75611 0.82040 0.82187 0.86119 0.82233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.65 13.29 55.43 0.74 -24.91 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.91 20.44 29.54 -169.99 -5.02 15.41 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 7 C -0.55 -14.40 9.28 -34.44 -0.32 -14.72 16 8 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 9 C 0.26 6.82 5.43 -5.20 -0.03 6.79 16 10 N -0.72 -14.35 5.55 -66.42 -0.37 -14.72 16 11 C 0.69 13.34 8.42 -86.92 -0.73 12.61 16 12 O -0.58 -13.66 13.82 5.29 0.07 -13.59 16 13 N -0.69 -9.65 5.36 -14.12 -0.08 -9.72 16 14 C 0.13 1.84 6.32 -83.53 -0.53 1.31 16 15 C 0.09 0.99 11.12 -17.33 -0.19 0.79 16 16 N -0.46 -5.52 10.35 -13.09 -0.14 -5.66 16 17 C 0.10 1.08 10.82 -17.53 -0.19 0.89 16 18 C -0.21 -2.55 5.38 -104.51 -0.56 -3.11 16 19 C 0.32 3.48 5.47 36.00 0.20 3.67 16 20 F -0.20 -2.53 17.27 2.25 0.04 -2.49 16 21 F -0.19 -2.73 17.27 2.25 0.04 -2.69 16 22 C -0.04 -0.62 8.40 -39.10 -0.33 -0.95 16 23 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 24 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.39 6.47 8.34 -40.82 -0.34 6.13 16 27 H 0.41 4.07 8.84 -40.82 -0.36 3.71 16 28 H 0.16 1.38 8.06 -52.48 -0.42 0.96 16 29 H 0.16 1.04 7.95 -52.49 -0.42 0.63 16 30 H 0.12 0.71 7.89 -51.93 -0.41 0.30 16 31 H 0.16 2.91 6.32 -52.49 -0.33 2.58 16 LS Contribution 289.44 15.07 4.36 4.36 Total: -1.00 -33.44 289.44 -5.79 -39.23 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -2.66 Total: 5.80 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: -2.78 Total: 8.97 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.16 Total: -55.01 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.07 Total: -13.59 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.08 Total: -5.17 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -33.44 -5.79 -39.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880910538.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.217 kcal (2) G-P(sol) polarization free energy of solvation -33.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds