Wall clock time and date at job start Mon Mar 30 2020 01:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86804 * 119.99857 * 2 1 4 4 H 1.48498 * 109.47212 * 269.99992 * 3 2 1 5 5 H 1.48503 * 109.47299 * 29.99806 * 3 2 1 6 6 H 1.48501 * 109.47242 * 149.99759 * 3 2 1 7 7 C 1.38796 * 120.00282 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99913 * 0.02562 * 7 2 1 9 9 S 1.76209 * 120.00053 * 179.97438 * 7 2 1 10 10 C 1.80995 * 99.99851 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47359 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99710 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00444 * 179.97438 * 11 10 9 14 14 C 1.46494 * 119.99944 * 180.27506 * 13 11 10 15 15 H 1.09006 * 110.43749 * 332.11726 * 14 13 11 16 16 C 1.54096 * 110.48769 * 209.57173 * 14 13 11 17 17 O 1.43749 * 107.29535 * 239.29451 * 16 14 13 18 18 C 1.44369 * 106.97444 * 26.51463 * 17 16 14 19 19 C 1.54808 * 110.48743 * 94.66345 * 14 13 11 20 20 H 1.09002 * 110.90950 * 215.99275 * 19 14 13 21 21 C 1.52996 * 110.90657 * 339.59608 * 19 14 13 22 22 C 1.52998 * 117.49835 * 253.99768 * 21 19 14 23 23 C 1.53001 * 60.00396 * 252.51050 * 22 21 19 24 24 H 0.96999 * 120.00033 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.47343 * 59.99722 * 10 9 7 26 26 H 1.09007 * 109.47092 * 300.00155 * 10 9 7 27 27 H 0.96998 * 119.99834 * 0.02562 * 13 11 10 28 28 H 1.09001 * 109.88041 * 358.71998 * 16 14 13 29 29 H 1.09004 * 109.87995 * 119.87277 * 16 14 13 30 30 H 1.09005 * 110.61891 * 78.43553 * 18 17 16 31 31 H 1.08999 * 110.62164 * 201.44148 * 18 17 16 32 32 H 1.08994 * 115.55014 * 39.70982 * 21 19 14 33 33 H 1.09003 * 117.50154 * 359.97438 * 22 21 19 34 34 H 1.09004 * 117.50147 * 145.02502 * 22 21 19 35 35 H 1.08999 * 117.50045 * 252.51671 * 23 22 21 36 36 H 1.08999 * 117.49667 * 107.48729 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6528 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7724 -1.2019 -0.0001 10 6 4.0868 -2.9844 0.0001 11 6 5.5732 -3.2324 -0.0010 12 8 6.3441 -2.2961 -0.0015 13 7 6.0459 -4.4945 -0.0005 14 6 7.4909 -4.7355 0.0045 15 1 8.0165 -3.9071 -0.4706 16 6 7.8189 -6.0619 -0.7080 17 8 8.4926 -6.9029 0.2435 18 6 8.0525 -6.4915 1.5555 19 6 8.0007 -4.9423 1.4515 20 1 8.9929 -4.5096 1.5799 21 6 7.0164 -4.3570 2.4660 22 6 7.4088 -3.0502 3.1581 23 6 7.4311 -4.3658 3.9388 24 1 -0.4850 0.8400 -0.0004 25 1 3.6434 -3.4317 -0.8896 26 1 3.6441 -3.4312 0.8904 27 1 5.4293 -5.2433 0.0002 28 1 6.8983 -6.5418 -1.0402 29 1 8.4698 -5.8730 -1.5618 30 1 7.0635 -6.8952 1.7727 31 1 8.7700 -6.8007 2.3155 32 1 5.9613 -4.5098 2.2394 33 1 8.3684 -2.6075 2.8910 34 1 6.6117 -2.3427 3.3869 35 1 6.6486 -4.5240 4.6810 36 1 8.4052 -4.7886 4.1848 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891069813.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:57 Heat of formation + Delta-G solvation = -55.910005 kcal Electronic energy + Delta-G solvation = -18839.353948 eV Core-core repulsion = 15836.689553 eV Total energy + Delta-G solvation = -3002.664395 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.56959 -38.58852 -36.96769 -34.39756 -32.46662 -31.06325 -29.60686 -28.14115 -25.63702 -23.75262 -22.50314 -22.00556 -20.94674 -19.70748 -17.97228 -17.05801 -16.70173 -16.40664 -15.51246 -15.17394 -15.03861 -14.79870 -14.62267 -14.08116 -13.85251 -13.31539 -12.82588 -12.76171 -12.58173 -12.27128 -11.84335 -11.58201 -11.44796 -11.29322 -11.09572 -11.03545 -10.63055 -10.25023 -10.21243 -9.88846 -9.85084 -9.54166 -9.04494 -8.98566 -8.53513 -6.94866 -6.31663 -4.03648 2.70918 2.91508 3.24268 3.31063 3.47567 3.54624 3.64628 3.79074 4.30284 4.39545 4.46080 4.57299 4.70318 4.82830 4.90604 5.04146 5.07480 5.07885 5.17274 5.26065 5.30695 5.48477 5.52018 5.59407 5.69107 5.71659 5.83240 5.96459 5.98327 6.14180 6.21932 6.37635 6.61906 7.52987 7.91348 8.38812 8.44795 9.14521 10.77633 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.029780 B = 0.004585 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.998923 B = 6104.864843 C = 6485.612476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.097 3.903 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.523 4.523 8 H 0.088 0.912 9 S -0.139 6.139 10 C -0.125 4.125 11 C 0.534 3.466 12 O -0.510 6.510 13 N -0.727 5.727 14 C 0.119 3.881 15 H 0.108 0.892 16 C 0.041 3.959 17 O -0.376 6.376 18 C 0.053 3.947 19 C -0.101 4.101 20 H 0.091 0.909 21 C -0.139 4.139 22 C -0.162 4.162 23 C -0.184 4.184 24 H 0.271 0.729 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.399 0.601 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.243 -13.011 3.426 20.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.088 5.912 10 C -0.276 4.276 11 C 0.320 3.680 12 O -0.384 6.384 13 N -0.382 5.382 14 C 0.012 3.988 15 H 0.126 0.874 16 C -0.036 4.036 17 O -0.295 6.295 18 C -0.023 4.023 19 C -0.121 4.121 20 H 0.109 0.891 21 C -0.158 4.158 22 C -0.199 4.199 23 C -0.221 4.221 24 H 0.081 0.919 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.233 0.767 28 H 0.085 0.915 29 H 0.113 0.887 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.125 0.875 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.111 0.889 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 16.505 -11.500 3.362 20.396 hybrid contribution -1.367 -0.490 0.019 1.452 sum 15.138 -11.990 3.380 19.605 Atomic orbital electron populations 1.69937 1.05932 1.27790 1.48015 1.24705 0.94429 0.98938 0.93150 0.86744 0.81880 0.83322 0.79953 1.19196 1.19925 1.15944 1.22323 0.88324 0.97523 1.58862 0.89424 1.84783 1.09213 0.99835 1.97419 1.23289 0.94035 1.04549 1.05717 1.20232 0.90499 0.82280 0.74983 1.90698 1.58616 1.42008 1.47068 1.45989 1.06433 1.08239 1.77526 1.22202 0.82602 0.98730 0.95227 0.87417 1.23488 0.98072 0.89187 0.92870 1.88899 1.67171 1.57565 1.15854 1.23661 1.00259 0.92930 0.85490 1.22721 0.99243 0.95698 0.94408 0.89118 1.22018 0.99520 1.02105 0.92146 1.22902 1.03291 0.90725 1.03026 1.22962 1.02631 1.02449 0.94095 0.91918 0.88566 0.88630 0.76650 0.91536 0.88717 0.91822 0.88889 0.87452 0.88978 0.88418 0.88870 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.35 13.97 55.49 0.78 -25.58 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.55 27.74 -169.99 -4.71 16.83 16 4 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 7 C -0.52 -14.84 10.04 30.94 0.31 -14.53 16 8 H 0.09 2.60 8.03 -52.48 -0.42 2.18 16 9 S -0.14 -3.42 18.55 -107.50 -1.99 -5.42 16 10 C -0.13 -2.31 6.16 36.00 0.22 -2.09 16 11 C 0.53 8.77 6.66 -10.99 -0.07 8.70 16 12 O -0.51 -10.22 15.44 5.56 0.09 -10.14 16 13 N -0.73 -8.48 3.63 -52.33 -0.19 -8.67 16 14 C 0.12 1.28 3.38 -66.41 -0.22 1.05 16 15 H 0.11 1.34 7.42 -51.93 -0.39 0.96 16 16 C 0.04 0.37 7.48 37.73 0.28 0.66 16 17 O -0.38 -3.93 11.52 -35.23 -0.41 -4.34 16 18 C 0.05 0.47 7.17 38.41 0.28 0.75 16 19 C -0.10 -1.02 3.22 -88.42 -0.28 -1.30 16 20 H 0.09 0.92 8.06 -51.93 -0.42 0.50 16 21 C -0.14 -1.57 4.10 -90.62 -0.37 -1.94 16 22 C -0.16 -2.02 10.20 -26.73 -0.27 -2.29 16 23 C -0.18 -1.84 10.22 -26.73 -0.27 -2.11 16 24 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.10 1.67 8.14 -51.91 -0.42 1.24 16 26 H 0.10 1.65 8.14 -51.91 -0.42 1.22 16 27 H 0.40 3.65 8.44 -40.82 -0.34 3.31 16 28 H 0.07 0.54 7.70 -51.93 -0.40 0.14 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.53 8.05 -51.93 -0.42 0.11 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.11 1.31 6.58 -51.93 -0.34 0.97 16 33 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 313.65 15.07 4.73 4.73 Total: -1.00 -32.57 313.65 -7.49 -40.06 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -5.27 Total: 2.93 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -0.51 Total: -10.41 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.59 Total: -34.24 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.32 Total: -14.47 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.83 kcal Atomic # 16 Polarization: -3.42 SS G_CDS: -1.99 Total: -5.42 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.57 -7.49 -40.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891069813.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.853 kcal (2) G-P(sol) polarization free energy of solvation -32.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds