Wall clock time and date at job start Mon Mar 30 2020 01:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86809 * 119.99585 * 2 1 4 4 H 1.48497 * 109.47104 * 269.99822 * 3 2 1 5 5 H 1.48502 * 109.46943 * 29.99961 * 3 2 1 6 6 H 1.48497 * 109.46910 * 149.99761 * 3 2 1 7 7 C 1.38796 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99554 * 0.02562 * 7 2 1 9 9 S 1.76200 * 120.00095 * 180.02562 * 7 2 1 10 10 C 1.80999 * 99.99730 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46903 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72354 * 11 10 9 14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 15 15 H 1.09000 * 110.45506 * 323.85547 * 14 13 11 16 16 C 1.54477 * 110.51023 * 86.45591 * 14 13 11 17 17 O 1.44425 * 104.80705 * 142.62403 * 16 14 13 18 18 C 1.44427 * 105.27385 * 319.49243 * 17 16 14 19 19 C 1.54476 * 104.80320 * 40.50794 * 18 17 16 20 20 H 1.09001 * 110.51729 * 94.67098 * 19 18 17 21 21 C 1.52997 * 110.51057 * 217.37797 * 19 18 17 22 22 C 1.53005 * 117.49913 * 243.26457 * 21 19 18 23 23 C 1.52998 * 117.49918 * 174.64226 * 21 19 18 24 24 H 0.97002 * 120.00159 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47193 * 60.00140 * 10 9 7 26 26 H 1.08994 * 109.47534 * 299.99814 * 10 9 7 27 27 H 0.97000 * 120.00317 * 0.28382 * 13 11 10 28 28 H 1.09006 * 110.37631 * 261.45577 * 16 14 13 29 29 H 1.09007 * 110.37475 * 23.79501 * 16 14 13 30 30 H 1.08999 * 110.37233 * 159.34210 * 18 17 16 31 31 H 1.08994 * 110.36907 * 281.56403 * 18 17 16 32 32 H 1.09005 * 115.55261 * 28.97181 * 21 19 18 33 33 H 1.08993 * 117.50028 * 0.02562 * 22 21 19 34 34 H 1.08999 * 117.49634 * 145.02159 * 22 21 19 35 35 H 1.09011 * 117.50001 * 214.97840 * 23 21 19 36 36 H 1.09000 * 117.50378 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4404 0.7001 7 6 2.0104 -1.2019 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7724 -1.2018 0.0012 10 6 4.0867 -2.9843 0.0025 11 6 5.5732 -3.2322 0.0026 12 8 6.3442 -2.2959 0.0024 13 7 6.0459 -4.4943 0.0092 14 6 7.4909 -4.7353 0.0154 15 1 8.0045 -3.9869 -0.5880 16 6 8.0342 -4.7306 1.4614 17 8 9.0472 -5.7599 1.4785 18 6 8.5006 -6.8447 0.6972 19 6 7.8048 -6.1581 -0.4989 20 1 8.4752 -6.1147 -1.3573 21 6 6.5135 -6.8937 -0.8624 22 6 6.4348 -7.5412 -2.2465 23 6 5.6294 -6.2752 -1.9471 24 1 -0.4850 0.8400 -0.0004 25 1 3.6442 -3.4320 -0.8874 26 1 3.6435 -3.4308 0.8926 27 1 5.4294 -5.2432 0.0097 28 1 8.4738 -3.7617 1.6986 29 1 7.2383 -4.9700 2.1667 30 1 9.2983 -7.4998 0.3472 31 1 7.7776 -7.4094 1.2858 32 1 6.0157 -7.4049 -0.0383 33 1 7.3032 -7.4434 -2.8979 34 1 5.8853 -8.4785 -2.3331 35 1 4.5500 -6.3797 -1.8369 36 1 5.9675 -5.3439 -2.4016 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891069814.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:59 Heat of formation + Delta-G solvation = -54.122816 kcal Electronic energy + Delta-G solvation = -18713.563891 eV Core-core repulsion = 15710.976995 eV Total energy + Delta-G solvation = -3002.586896 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.68640 -38.62452 -37.28991 -34.18869 -32.45515 -31.20429 -29.71460 -27.94585 -25.62535 -23.64222 -22.85091 -22.58956 -20.84939 -19.64738 -17.97876 -16.95999 -16.76500 -16.00944 -15.86999 -15.33076 -14.98843 -14.78349 -14.65917 -14.38536 -13.82828 -13.40129 -12.83506 -12.78647 -12.47475 -12.30186 -11.89206 -11.75015 -11.70890 -11.27982 -11.09525 -11.02099 -10.63711 -10.53931 -10.26676 -10.06076 -9.87345 -9.55974 -9.03222 -8.96490 -8.52039 -6.93691 -6.30544 -4.02480 2.72635 2.90945 3.24641 3.32176 3.37026 3.49370 3.58826 3.87409 4.13694 4.29766 4.32053 4.49270 4.66399 4.72977 4.80260 4.90769 4.99324 5.03556 5.08706 5.11336 5.29260 5.38626 5.44520 5.55120 5.65052 5.69951 5.73646 5.80028 5.83529 5.91080 5.98148 6.34455 6.64784 7.58703 7.92441 8.39736 8.45489 9.15711 10.78686 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.030484 B = 0.004347 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.279624 B = 6440.055362 C = 7042.257155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.140 6.140 10 C -0.124 4.124 11 C 0.529 3.471 12 O -0.519 6.519 13 N -0.724 5.724 14 C 0.123 3.877 15 H 0.102 0.898 16 C 0.034 3.966 17 O -0.373 6.373 18 C 0.052 3.948 19 C -0.099 4.099 20 H 0.094 0.906 21 C -0.159 4.159 22 C -0.172 4.172 23 C -0.174 4.174 24 H 0.271 0.729 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.404 0.596 28 H 0.100 0.900 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.105 -16.657 -1.475 21.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.274 4.274 11 C 0.316 3.684 12 O -0.394 6.394 13 N -0.381 5.381 14 C 0.016 3.984 15 H 0.120 0.880 16 C -0.044 4.044 17 O -0.291 6.291 18 C -0.025 4.025 19 C -0.118 4.118 20 H 0.112 0.888 21 C -0.178 4.178 22 C -0.209 4.209 23 C -0.211 4.211 24 H 0.081 0.919 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.242 0.758 28 H 0.118 0.882 29 H 0.083 0.917 30 H 0.112 0.888 31 H 0.081 0.919 32 H 0.128 0.872 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 15.424 -14.981 -1.359 21.545 hybrid contribution -1.397 -0.717 -0.154 1.578 sum 14.026 -15.698 -1.513 21.106 Atomic orbital electron populations 1.69938 1.05927 1.27783 1.48054 1.24706 0.94435 0.98949 0.93144 0.86742 0.81907 0.83301 0.79940 1.19207 1.19925 1.15918 1.22316 0.88289 0.97529 1.58832 0.89406 1.84799 1.09252 0.99946 1.97423 1.23273 0.93951 1.04461 1.05761 1.20350 0.90637 0.82383 0.75080 1.90702 1.58708 1.42270 1.47675 1.46230 1.06536 1.08288 1.77089 1.22191 0.82567 0.96716 0.96903 0.88025 1.23941 0.91555 0.92679 0.96239 1.89163 1.39959 1.27163 1.72791 1.23466 0.98138 0.90370 0.90523 1.22386 0.96040 0.93738 0.99617 0.88791 1.22219 0.98156 1.03965 0.93430 1.23043 1.03028 0.97336 0.97539 1.23099 0.98277 0.97685 1.02045 0.91927 0.88529 0.88523 0.75798 0.88154 0.91661 0.88836 0.91911 0.87207 0.88732 0.88640 0.88123 0.88118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.41 13.97 55.49 0.78 -25.64 16 2 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.66 27.74 -169.99 -4.72 16.94 16 4 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 7 C -0.52 -14.89 10.04 30.94 0.31 -14.58 16 8 H 0.09 2.61 8.03 -52.49 -0.42 2.18 16 9 S -0.14 -3.51 18.55 -107.50 -1.99 -5.50 16 10 C -0.12 -2.32 6.16 36.01 0.22 -2.10 16 11 C 0.53 9.00 7.84 -10.98 -0.09 8.91 16 12 O -0.52 -10.79 15.57 5.55 0.09 -10.71 16 13 N -0.72 -8.80 3.76 -52.29 -0.20 -8.99 16 14 C 0.12 1.38 3.33 -66.36 -0.22 1.16 16 15 H 0.10 1.31 7.67 -51.93 -0.40 0.91 16 16 C 0.03 0.39 7.35 37.93 0.28 0.67 16 17 O -0.37 -4.30 11.65 -35.23 -0.41 -4.71 16 18 C 0.05 0.43 7.18 37.93 0.27 0.70 16 19 C -0.10 -0.82 3.31 -89.06 -0.29 -1.11 16 20 H 0.09 0.74 7.95 -51.93 -0.41 0.33 16 21 C -0.16 -1.16 3.89 -90.62 -0.35 -1.51 16 22 C -0.17 -1.18 10.19 -26.73 -0.27 -1.45 16 23 C -0.17 -1.43 7.84 -26.73 -0.21 -1.64 16 24 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.10 1.67 8.14 -51.91 -0.42 1.25 16 26 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 27 H 0.40 4.03 5.60 -40.82 -0.23 3.80 16 28 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.07 0.75 8.06 -51.93 -0.42 0.33 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.46 7.64 -51.93 -0.40 0.07 16 32 H 0.11 0.71 7.79 -51.93 -0.40 0.31 16 33 H 0.09 0.62 8.07 -51.93 -0.42 0.20 16 34 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.10 0.79 8.14 -51.92 -0.42 0.37 16 36 H 0.10 1.00 7.96 -51.93 -0.41 0.58 16 LS Contribution 310.74 15.07 4.68 4.68 Total: -1.00 -32.86 310.74 -7.42 -40.28 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -5.21 Total: 1.89 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -0.45 Total: -8.24 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.58 Total: -34.63 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.32 Total: -15.42 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.72 Total: 16.94 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.86 -7.42 -40.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891069814.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.840 kcal (2) G-P(sol) polarization free energy of solvation -32.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds