Wall clock time and date at job start Mon Mar 30 2020 01:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86809 * 119.99585 * 2 1 4 4 H 1.48497 * 109.47104 * 269.99822 * 3 2 1 5 5 H 1.48502 * 109.46943 * 29.99961 * 3 2 1 6 6 H 1.48497 * 109.46910 * 149.99761 * 3 2 1 7 7 C 1.38796 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99554 * 0.02562 * 7 2 1 9 9 S 1.76200 * 120.00095 * 180.02562 * 7 2 1 10 10 C 1.80999 * 99.99730 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46903 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72354 * 11 10 9 14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 15 15 H 1.09000 * 110.45506 * 323.85547 * 14 13 11 16 16 C 1.54477 * 110.51023 * 86.45591 * 14 13 11 17 17 O 1.44425 * 104.80705 * 142.62403 * 16 14 13 18 18 C 1.44427 * 105.27385 * 319.49243 * 17 16 14 19 19 C 1.54476 * 104.80320 * 40.50794 * 18 17 16 20 20 H 1.09001 * 110.51729 * 94.67098 * 19 18 17 21 21 C 1.52997 * 110.51057 * 217.37797 * 19 18 17 22 22 C 1.53005 * 117.49913 * 243.26457 * 21 19 18 23 23 C 1.52998 * 117.49918 * 174.64226 * 21 19 18 24 24 H 0.97002 * 120.00159 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47193 * 60.00140 * 10 9 7 26 26 H 1.08994 * 109.47534 * 299.99814 * 10 9 7 27 27 H 0.97000 * 120.00317 * 0.28382 * 13 11 10 28 28 H 1.09006 * 110.37631 * 261.45577 * 16 14 13 29 29 H 1.09007 * 110.37475 * 23.79501 * 16 14 13 30 30 H 1.08999 * 110.37233 * 159.34210 * 18 17 16 31 31 H 1.08994 * 110.36907 * 281.56403 * 18 17 16 32 32 H 1.09005 * 115.55261 * 28.97181 * 21 19 18 33 33 H 1.08993 * 117.50028 * 0.02562 * 22 21 19 34 34 H 1.08999 * 117.49634 * 145.02159 * 22 21 19 35 35 H 1.09011 * 117.50001 * 214.97840 * 23 21 19 36 36 H 1.09000 * 117.50378 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4404 0.7001 7 6 2.0104 -1.2019 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7724 -1.2018 0.0012 10 6 4.0867 -2.9843 0.0025 11 6 5.5732 -3.2322 0.0026 12 8 6.3442 -2.2959 0.0024 13 7 6.0459 -4.4943 0.0092 14 6 7.4909 -4.7353 0.0154 15 1 8.0045 -3.9869 -0.5880 16 6 8.0342 -4.7306 1.4614 17 8 9.0472 -5.7599 1.4785 18 6 8.5006 -6.8447 0.6972 19 6 7.8048 -6.1581 -0.4989 20 1 8.4752 -6.1147 -1.3573 21 6 6.5135 -6.8937 -0.8624 22 6 6.4348 -7.5412 -2.2465 23 6 5.6294 -6.2752 -1.9471 24 1 -0.4850 0.8400 -0.0004 25 1 3.6442 -3.4320 -0.8874 26 1 3.6435 -3.4308 0.8926 27 1 5.4294 -5.2432 0.0097 28 1 8.4738 -3.7617 1.6986 29 1 7.2383 -4.9700 2.1667 30 1 9.2983 -7.4998 0.3472 31 1 7.7776 -7.4094 1.2858 32 1 6.0157 -7.4049 -0.0383 33 1 7.3032 -7.4434 -2.8979 34 1 5.8853 -8.4785 -2.3331 35 1 4.5500 -6.3797 -1.8369 36 1 5.9675 -5.3439 -2.4016 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891069814.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:59 Heat of formation + Delta-G solvation = -76.466250 kcal Electronic energy + Delta-G solvation = -18714.532775 eV Core-core repulsion = 15710.976995 eV Total energy + Delta-G solvation = -3003.555780 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.63793 -39.85422 -37.98819 -35.31889 -34.66923 -32.25850 -30.79127 -29.06828 -27.83493 -24.38095 -23.63805 -23.28167 -21.97459 -20.53035 -19.91309 -18.17718 -17.77763 -17.13478 -16.97929 -16.78925 -16.47976 -16.02281 -15.63344 -15.38048 -15.06340 -14.92080 -14.71054 -13.86618 -13.56017 -13.34338 -13.15192 -13.02599 -12.89783 -12.62173 -12.42826 -12.32527 -11.87935 -11.85270 -11.17741 -11.16217 -11.04831 -10.91426 -10.84567 -10.53241 -10.10845 -8.99355 -8.51562 -6.22154 0.98506 1.31292 1.46611 1.53406 1.55171 2.16096 2.25251 2.70042 2.73835 2.87006 3.03837 3.46550 3.56477 3.76934 3.88681 3.94989 4.07940 4.19842 4.23184 4.30531 4.33835 4.44948 4.46623 4.76123 4.79112 4.83298 4.84790 4.94429 5.07339 5.26808 5.28493 5.34653 5.70807 5.75952 6.11621 6.44015 6.93961 7.17038 8.60836 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.030484 B = 0.004347 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.279624 B = 6440.055362 C = 7042.257155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.047 3.953 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.237 1.237 7 C -0.529 4.529 8 H 0.063 0.937 9 S -0.174 6.174 10 C -0.111 4.111 11 C 0.535 3.465 12 O -0.561 6.561 13 N -0.696 5.696 14 C 0.120 3.880 15 H 0.083 0.917 16 C 0.037 3.963 17 O -0.389 6.389 18 C 0.049 3.951 19 C -0.088 4.088 20 H 0.101 0.899 21 C -0.156 4.156 22 C -0.159 4.159 23 C -0.192 4.192 24 H 0.277 0.723 25 H 0.114 0.886 26 H 0.113 0.887 27 H 0.418 0.582 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.126 0.874 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.182 -18.410 -1.557 23.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.158 4.158 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.161 1.161 7 C -0.676 4.676 8 H 0.081 0.919 9 S 0.052 5.948 10 C -0.262 4.262 11 C 0.321 3.679 12 O -0.439 6.439 13 N -0.353 5.353 14 C 0.014 3.986 15 H 0.101 0.899 16 C -0.041 4.041 17 O -0.308 6.308 18 C -0.027 4.027 19 C -0.107 4.107 20 H 0.119 0.881 21 C -0.174 4.174 22 C -0.196 4.196 23 C -0.229 4.229 24 H 0.086 0.914 25 H 0.132 0.868 26 H 0.131 0.869 27 H 0.259 0.741 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.132 0.868 31 H 0.096 0.904 32 H 0.143 0.857 33 H 0.116 0.884 34 H 0.127 0.873 35 H 0.123 0.877 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 16.497 -16.794 -1.442 23.586 hybrid contribution -1.686 -0.364 -0.154 1.732 sum 14.811 -17.158 -1.596 22.722 Atomic orbital electron populations 1.70013 1.07303 1.29007 1.49200 1.25533 0.95221 1.02167 0.92886 0.85891 0.80704 0.79727 0.80201 1.18719 1.18390 1.16087 1.22466 0.90278 0.96694 1.58202 0.91884 1.84730 1.06383 1.06090 1.97581 1.23260 0.95788 0.99682 1.07451 1.20007 0.89435 0.83391 0.75056 1.90696 1.59231 1.43845 1.50124 1.45969 1.07537 1.06955 1.74881 1.22259 0.81135 0.98331 0.96903 0.89877 1.23814 0.91661 0.92420 0.96240 1.89154 1.40259 1.27895 1.73478 1.23697 0.99186 0.89693 0.90106 1.22340 0.96830 0.91602 0.99936 0.88119 1.22253 0.97278 1.03759 0.94142 1.23101 1.02665 0.96992 0.96793 1.23073 0.98754 0.97794 1.03257 0.91377 0.86811 0.86868 0.74115 0.89683 0.91267 0.86843 0.90441 0.85655 0.88368 0.87294 0.87725 0.90095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.54 13.97 21.65 0.30 -55.23 16 2 C 0.05 2.76 5.50 84.86 0.47 3.23 16 3 Si 0.91 44.77 27.74 68.60 1.90 46.67 16 4 H -0.26 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.24 -11.61 6.74 99.48 0.67 -10.94 16 7 C -0.53 -30.46 10.04 67.95 0.68 -29.77 16 8 H 0.06 3.82 8.03 -2.91 -0.02 3.79 16 9 S -0.17 -8.69 18.55 -56.49 -1.05 -9.74 16 10 C -0.11 -4.05 6.16 71.24 0.44 -3.61 16 11 C 0.54 17.72 7.84 87.66 0.69 18.41 16 12 O -0.56 -23.31 15.57 -3.04 -0.05 -23.35 16 13 N -0.70 -15.82 3.76 -437.73 -1.65 -17.47 16 14 C 0.12 2.53 3.33 46.01 0.15 2.69 16 15 H 0.08 2.13 7.67 -2.39 -0.02 2.11 16 16 C 0.04 0.82 7.35 72.48 0.53 1.35 16 17 O -0.39 -8.30 11.65 -148.98 -1.74 -10.03 16 18 C 0.05 0.67 7.18 72.48 0.52 1.19 16 19 C -0.09 -1.24 3.31 -9.78 -0.03 -1.27 16 20 H 0.10 1.33 7.95 -2.39 -0.02 1.31 16 21 C -0.16 -1.78 3.89 -10.79 -0.04 -1.82 16 22 C -0.16 -1.67 10.19 30.60 0.31 -1.36 16 23 C -0.19 -2.73 7.84 30.59 0.24 -2.49 16 24 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 25 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 26 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 27 H 0.42 7.30 5.60 -92.71 -0.52 6.78 16 28 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 29 H 0.07 1.47 8.06 -2.38 -0.02 1.45 16 30 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 0.85 7.64 -2.39 -0.02 0.83 16 32 H 0.13 1.11 7.79 -2.38 -0.02 1.09 16 33 H 0.10 0.99 8.07 -2.39 -0.02 0.97 16 34 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.08 1.50 7.96 -2.39 -0.02 1.48 16 Total: -1.00 -71.29 310.74 2.21 -69.09 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.52 Total: 13.52 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 3.96 Total: -13.46 kcal Atomic # 7 Polarization: -71.35 SS G_CDS: -1.35 Total: -72.70 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -1.78 Total: -33.38 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.90 Total: 46.67 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.05 Total: -9.74 kcal Total: -71.29 2.21 -69.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891069814.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.380 kcal (2) G-P(sol) polarization free energy of solvation -71.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds