Wall clock time and date at job start Mon Mar 30 2020 01:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86800 * 119.99796 * 2 1 4 4 H 1.48503 * 109.46845 * 240.00163 * 3 2 1 5 5 H 1.48503 * 109.47399 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47295 * 120.00259 * 3 2 1 7 7 C 1.38804 * 120.00435 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99869 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99716 * 0.02562 * 7 2 1 10 10 C 1.80996 * 99.99917 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47087 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99704 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00266 * 180.02562 * 11 10 9 14 14 C 1.46495 * 120.00357 * 179.97438 * 13 11 10 15 15 H 1.08997 * 110.46033 * 323.85093 * 14 13 11 16 16 C 1.54482 * 110.51123 * 86.45189 * 14 13 11 17 17 O 1.44427 * 104.80432 * 94.66861 * 16 14 13 18 18 C 1.44426 * 105.27403 * 40.50757 * 17 16 14 19 19 C 1.54473 * 104.80508 * 319.49352 * 18 17 16 20 20 H 1.09002 * 110.50909 * 265.33087 * 19 18 17 21 21 C 1.53001 * 110.51072 * 142.62214 * 19 18 17 22 22 C 1.52999 * 117.50113 * 134.10535 * 21 19 18 23 23 C 1.52999 * 117.50039 * 65.44437 * 21 19 18 24 24 H 0.97000 * 119.99818 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47323 * 299.99782 * 10 9 7 26 26 H 1.08996 * 109.47319 * 60.00254 * 10 9 7 27 27 H 0.97005 * 119.99763 * 359.97438 * 13 11 10 28 28 H 1.08998 * 110.37401 * 213.49594 * 16 14 13 29 29 H 1.09000 * 110.37284 * 335.72690 * 16 14 13 30 30 H 1.09002 * 110.36585 * 78.32433 * 18 17 16 31 31 H 1.08996 * 110.37436 * 200.54516 * 18 17 16 32 32 H 1.09002 * 115.54758 * 279.77334 * 21 19 18 33 33 H 1.09005 * 117.49833 * 359.97438 * 22 21 19 34 34 H 1.08994 * 117.50318 * 145.02257 * 22 21 19 35 35 H 1.09002 * 117.49898 * 214.98171 * 23 21 19 36 36 H 1.08998 * 117.50148 * 359.97284 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2124 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0001 9 16 1.1295 -2.7280 0.0005 10 6 2.5160 -3.8913 0.0005 11 6 1.9876 -5.3027 -0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3431 0.0003 14 6 2.3306 -7.7150 0.0003 15 1 1.4246 -7.7826 0.6023 16 6 2.0575 -8.1907 -1.4439 17 8 3.2581 -8.8919 -1.8348 18 6 3.6540 -9.6474 -0.6692 19 6 3.4050 -8.6954 0.5215 20 1 4.3184 -8.1593 0.7793 21 6 2.8796 -9.4738 1.7294 22 6 3.5101 -9.1750 3.0911 23 6 3.8197 -10.4928 2.3765 24 1 -0.4850 -0.8401 0.0004 25 1 3.1246 -3.7313 -0.8895 26 1 3.1246 -3.7313 0.8905 27 1 3.8011 -6.1834 0.0006 28 1 1.2007 -8.8640 -1.4660 29 1 1.8849 -7.3364 -2.0985 30 1 3.0419 -10.5442 -0.5726 31 1 4.7091 -9.9138 -0.7301 32 1 1.8162 -9.7124 1.7086 33 1 4.2995 -8.4242 3.1264 34 1 2.8617 -9.2174 3.9662 35 1 3.3747 -11.4017 2.7818 36 1 4.8123 -10.6091 1.9415 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891069816.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:04 Heat of formation + Delta-G solvation = -67.076642 kcal Electronic energy + Delta-G solvation = -18332.486245 eV Core-core repulsion = 15329.337629 eV Total energy + Delta-G solvation = -3003.148616 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.48847 -38.70761 -37.18701 -34.37657 -32.53712 -31.16366 -29.63186 -28.00562 -24.85308 -23.90164 -22.68472 -22.26925 -20.79894 -19.96369 -18.35604 -17.23283 -16.67074 -16.14056 -15.93507 -15.39744 -15.00098 -14.82463 -14.39351 -13.91957 -13.81598 -13.26496 -12.83589 -12.56564 -12.38809 -12.27080 -11.92466 -11.85177 -11.81119 -11.62535 -11.30823 -10.92365 -10.62318 -10.39177 -10.17814 -10.10121 -9.60346 -9.52889 -9.03392 -8.93688 -8.23993 -6.68449 -6.63150 -4.01161 2.86326 2.92191 3.33927 3.35575 3.37580 3.51284 3.58221 3.74751 4.14055 4.24117 4.34183 4.47643 4.59570 4.83417 4.84636 4.96795 4.99639 5.10497 5.17371 5.21607 5.29984 5.35450 5.47069 5.50927 5.56950 5.66276 5.72974 5.76645 5.77467 5.87627 6.00052 6.45025 6.58933 7.56844 7.90939 8.45657 8.49149 9.26032 10.80814 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.032820 B = 0.003607 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.923950 B = 7760.093448 C = 8045.002455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.036 3.964 3 Si 1.084 2.916 4 H -0.285 1.285 5 H -0.278 1.278 6 H -0.285 1.285 7 C -0.608 4.608 8 H 0.066 0.934 9 S -0.115 6.115 10 C -0.131 4.131 11 C 0.532 3.468 12 O -0.517 6.517 13 N -0.727 5.727 14 C 0.123 3.877 15 H 0.105 0.895 16 C 0.034 3.966 17 O -0.373 6.373 18 C 0.052 3.948 19 C -0.097 4.097 20 H 0.091 0.909 21 C -0.147 4.147 22 C -0.174 4.174 23 C -0.178 4.178 24 H 0.278 0.722 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.400 0.600 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.931 -20.684 2.629 23.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.175 4.175 3 Si 0.910 3.090 4 H -0.211 1.211 5 H -0.203 1.203 6 H -0.211 1.211 7 C -0.756 4.756 8 H 0.084 0.916 9 S 0.111 5.889 10 C -0.282 4.282 11 C 0.318 3.682 12 O -0.392 6.392 13 N -0.381 5.381 14 C 0.017 3.983 15 H 0.123 0.877 16 C -0.044 4.044 17 O -0.292 6.292 18 C -0.025 4.025 19 C -0.116 4.116 20 H 0.109 0.891 21 C -0.165 4.165 22 C -0.211 4.211 23 C -0.215 4.215 24 H 0.090 0.910 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.234 0.766 28 H 0.087 0.913 29 H 0.117 0.883 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.128 0.872 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.811 -19.366 2.419 21.022 hybrid contribution 2.145 -1.301 0.259 2.523 sum 9.956 -20.667 2.678 23.096 Atomic orbital electron populations 1.70803 1.06705 1.30963 1.43315 1.26059 0.96318 1.02137 0.92980 0.83331 0.74768 0.74193 0.76726 1.21117 1.20263 1.21126 1.23708 0.96038 0.92197 1.63694 0.91607 1.84805 1.08042 0.98799 1.97232 1.23319 1.05177 0.94429 1.05304 1.20330 0.86583 0.86315 0.74959 1.90703 1.15292 1.85588 1.47584 1.46025 1.09953 1.04685 1.77402 1.22265 0.97800 0.81603 0.96636 0.87739 1.23943 0.87886 0.96908 0.95686 1.89164 1.42862 1.62959 1.34178 1.23441 1.01124 0.94210 0.83739 1.22393 0.98689 0.95785 0.94753 0.89112 1.22214 0.98776 1.02524 0.92977 1.23029 1.03484 0.99192 0.95436 1.22970 1.00559 0.93689 1.04250 0.90994 0.88879 0.88938 0.76572 0.91293 0.88328 0.91702 0.88977 0.87249 0.88623 0.88567 0.88621 0.88709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.55 13.67 55.49 0.76 -26.79 16 2 C 0.04 1.04 5.49 -17.43 -0.10 0.94 16 3 Si 1.08 24.94 29.92 -169.99 -5.09 19.86 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.61 -17.58 9.50 30.94 0.29 -17.28 16 8 H 0.07 1.82 7.80 -52.49 -0.41 1.41 16 9 S -0.11 -3.10 19.60 -107.50 -2.11 -5.20 16 10 C -0.13 -2.64 6.16 36.01 0.22 -2.42 16 11 C 0.53 9.72 7.84 -10.99 -0.09 9.63 16 12 O -0.52 -11.38 15.57 5.55 0.09 -11.29 16 13 N -0.73 -9.64 5.12 -52.29 -0.27 -9.90 16 14 C 0.12 1.44 3.06 -66.37 -0.20 1.23 16 15 H 0.10 1.36 7.16 -51.93 -0.37 0.99 16 16 C 0.03 0.40 7.35 37.94 0.28 0.68 16 17 O -0.37 -4.44 11.65 -35.23 -0.41 -4.86 16 18 C 0.05 0.44 7.02 37.93 0.27 0.71 16 19 C -0.10 -0.84 3.03 -89.06 -0.27 -1.11 16 20 H 0.09 0.74 7.50 -51.93 -0.39 0.35 16 21 C -0.15 -1.14 4.87 -90.62 -0.44 -1.59 16 22 C -0.17 -1.33 10.19 -26.69 -0.27 -1.60 16 23 C -0.18 -1.14 10.07 -26.69 -0.27 -1.41 16 24 H 0.28 8.83 7.13 -40.82 -0.29 8.54 16 25 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 26 H 0.09 1.73 8.14 -51.92 -0.42 1.30 16 27 H 0.40 4.30 8.31 -40.82 -0.34 3.96 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.10 1.36 8.06 -51.93 -0.42 0.94 16 30 H 0.06 0.49 7.87 -51.93 -0.41 0.08 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.11 0.87 7.98 -51.93 -0.41 0.46 16 33 H 0.10 0.73 8.10 -51.93 -0.42 0.31 16 34 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 318.32 15.07 4.80 4.80 Total: -1.00 -34.40 318.32 -8.02 -42.42 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -5.22 Total: 3.17 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -0.58 Total: -12.20 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.49 Total: -36.70 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.32 Total: -16.15 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -5.09 Total: 19.86 kcal Atomic # 16 Polarization: -3.10 SS G_CDS: -2.11 Total: -5.20 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.40 -8.02 -42.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891069816.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.657 kcal (2) G-P(sol) polarization free energy of solvation -34.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds