Wall clock time and date at job start Mon Mar 30 2020 01:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30859 * 125.77809 * 2 1 4 4 N 1.40075 * 108.41813 * 179.77976 * 3 2 1 5 5 C 1.46494 * 126.09487 * 180.27496 * 4 3 2 6 6 C 1.35865 * 107.81022 * 0.41928 * 4 3 2 7 7 N 1.39541 * 126.26338 * 179.84964 * 6 4 3 8 8 C 1.34779 * 120.00001 * 330.81754 * 7 6 4 9 9 O 1.21289 * 120.00088 * 354.11935 * 8 7 6 10 10 C 1.50697 * 119.99827 * 173.83907 * 8 7 6 11 11 H 1.09007 * 109.47491 * 299.99885 * 10 8 7 12 12 C 1.53005 * 109.47435 * 60.00224 * 10 8 7 13 13 C 1.50699 * 109.47346 * 180.02562 * 10 8 7 14 14 H 1.08002 * 119.99807 * 0.02562 * 13 10 8 15 15 C 1.37873 * 120.00783 * 179.97438 * 13 10 8 16 16 N 1.31517 * 119.99364 * 0.02562 * 15 13 10 17 17 Si 1.86799 * 120.00663 * 179.97438 * 15 13 10 18 18 H 1.48504 * 109.46715 * 0.02562 * 17 15 13 19 19 H 1.48493 * 109.47185 * 119.99941 * 17 15 13 20 20 H 1.48495 * 109.47362 * 240.00515 * 17 15 13 21 21 C 1.36150 * 107.47279 * 359.58630 * 6 4 3 22 22 Cl 1.73599 * 126.07632 * 180.28050 * 21 6 4 23 23 H 1.09001 * 109.46879 * 269.95716 * 1 2 3 24 24 H 1.08994 * 109.46863 * 29.96082 * 1 2 3 25 25 H 1.09000 * 109.46628 * 149.95585 * 1 2 3 26 26 H 1.09003 * 109.47230 * 272.06441 * 5 4 3 27 27 H 1.08999 * 109.47439 * 32.05891 * 5 4 3 28 28 H 1.08998 * 109.47897 * 152.06290 * 5 4 3 29 29 H 0.97001 * 120.00058 * 150.82423 * 7 6 4 30 30 H 1.08995 * 109.46642 * 299.99966 * 12 10 8 31 31 H 1.09000 * 109.46571 * 59.99868 * 12 10 8 32 32 H 1.08996 * 109.46895 * 179.97438 * 12 10 8 33 33 H 0.97008 * 119.99589 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2721 1.0616 0.0000 4 7 3.6090 0.6437 0.0051 5 6 4.7859 1.5160 0.0125 6 6 3.6197 -0.7149 -0.0013 7 7 4.7513 -1.5314 -0.0021 8 6 5.8956 -1.0966 -0.5661 9 8 5.9138 -0.0426 -1.1659 10 6 7.1539 -1.9171 -0.4461 11 1 7.4091 -2.0393 0.6066 12 6 6.9288 -3.2917 -1.0793 13 6 8.2815 -1.2146 -1.1574 14 1 8.1047 -0.2683 -1.6470 15 6 9.5391 -1.7792 -1.1824 16 7 9.7545 -2.9312 -0.5857 17 14 10.9366 -0.9086 -2.0647 18 1 10.4372 0.3613 -2.6506 19 1 12.0244 -0.6131 -1.0981 20 1 11.4592 -1.7815 -3.1464 21 6 2.3243 -1.1339 -0.0007 22 17 1.7835 -2.7835 -0.0006 23 1 -0.3633 -0.0008 1.0277 24 1 -0.3633 0.8903 -0.5132 25 1 -0.3632 -0.8896 -0.5145 26 1 5.0604 1.7645 -1.0127 27 1 4.5567 2.4308 0.5591 28 1 5.6163 1.0020 0.4965 29 1 4.7144 -2.4119 0.4032 30 1 6.1134 -3.7997 -0.5644 31 1 6.6738 -3.1695 -2.1319 32 1 7.8391 -3.8849 -0.9928 33 1 10.6394 -3.3283 -0.6029 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892124326.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:16 Heat of formation + Delta-G solvation = 20.242878 kcal Electronic energy + Delta-G solvation = -18856.098616 eV Core-core repulsion = 15751.152408 eV Total energy + Delta-G solvation = -3104.946207 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.76355 -40.66133 -37.44706 -36.09899 -35.96432 -34.59936 -32.58325 -30.71033 -29.83887 -27.24816 -26.43154 -25.18026 -22.38314 -22.06758 -20.26398 -19.02620 -18.25195 -18.05543 -17.14035 -16.80492 -16.53282 -15.98827 -15.32692 -15.02200 -14.61822 -14.41396 -14.24485 -13.84632 -13.60005 -13.37018 -13.13780 -12.95485 -12.73687 -12.63888 -12.48182 -12.40025 -12.28454 -12.05436 -11.83219 -11.43331 -11.08100 -10.71207 -10.42968 -9.93006 -9.19704 -8.18199 -6.28756 0.44948 0.84236 1.33852 1.39921 1.43389 1.51853 1.56786 1.73131 2.05874 2.43705 3.13062 3.42918 3.84029 3.95424 4.23963 4.28469 4.34089 4.65863 4.72270 4.78306 4.83687 4.87285 4.89354 4.96388 5.01162 5.41841 5.47566 5.70452 5.74585 5.90246 6.07860 6.25439 6.58500 6.79361 7.06308 7.40360 8.87864 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.031353 B = 0.005164 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.853669 B = 5420.606979 C = 6163.741128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.104 3.896 3 N -0.306 5.306 4 N -0.371 5.371 5 C 0.128 3.872 6 C 0.327 3.673 7 N -0.645 5.645 8 C 0.520 3.480 9 O -0.539 6.539 10 C 0.033 3.967 11 H 0.052 0.948 12 C -0.126 4.126 13 C -0.527 4.527 14 H 0.056 0.944 15 C 0.023 3.977 16 N -0.909 5.909 17 Si 0.954 3.046 18 H -0.277 1.277 19 H -0.276 1.276 20 H -0.278 1.278 21 C -0.228 4.228 22 Cl -0.024 7.024 23 H 0.100 0.900 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.434 0.566 30 H 0.052 0.948 31 H 0.026 0.974 32 H 0.075 0.925 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.224 1.020 3.749 15.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 N -0.130 5.130 4 N -0.156 5.156 5 C -0.012 4.012 6 C 0.103 3.897 7 N -0.298 5.298 8 C 0.312 3.688 9 O -0.414 6.414 10 C 0.012 3.988 11 H 0.070 0.930 12 C -0.184 4.184 13 C -0.565 4.565 14 H 0.074 0.926 15 C -0.177 4.177 16 N -0.548 5.548 17 Si 0.781 3.219 18 H -0.202 1.202 19 H -0.202 1.202 20 H -0.204 1.204 21 C -0.269 4.269 22 Cl 0.004 6.996 23 H 0.118 0.882 24 H 0.105 0.895 25 H 0.111 0.889 26 H 0.096 0.904 27 H 0.114 0.886 28 H 0.093 0.907 29 H 0.275 0.725 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.094 0.906 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.829 2.855 3.358 15.470 hybrid contribution 1.244 -1.095 -0.298 1.683 sum -13.585 1.761 3.060 14.036 Atomic orbital electron populations 1.20399 0.82866 1.04764 1.04855 1.22648 0.98910 0.87615 0.97112 1.77427 0.85123 1.22135 1.28310 1.48593 1.06619 1.02718 1.57702 1.22054 0.82057 0.93189 1.03868 1.17938 0.88277 0.83661 0.99797 1.43370 1.07923 1.19658 1.58819 1.22079 0.84647 0.86029 0.76088 1.90634 1.85549 1.24299 1.40946 1.18835 0.87715 0.93428 0.98850 0.93027 1.21630 1.01843 0.96690 0.98233 1.21251 0.93770 1.06659 1.34821 0.92571 1.25540 1.00528 0.95606 0.95976 1.69947 1.23005 1.17746 1.44089 0.85553 0.79244 0.78605 0.78539 1.20204 1.20197 1.20380 1.19978 0.90088 0.88569 1.28256 1.98293 1.89275 1.14076 1.97982 0.88206 0.89475 0.88852 0.90436 0.88551 0.90666 0.72516 0.92945 0.95520 0.90607 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.24 10.30 71.24 0.73 -0.50 16 2 C 0.10 2.88 7.20 43.08 0.31 3.19 16 3 N -0.31 -9.93 12.56 -47.43 -0.60 -10.53 16 4 N -0.37 -12.97 3.99 -365.87 -1.46 -14.43 16 5 C 0.13 4.29 9.24 127.77 1.18 5.47 16 6 C 0.33 11.15 7.33 131.11 0.96 12.11 16 7 N -0.65 -22.01 5.34 -308.04 -1.64 -23.65 16 8 C 0.52 21.66 6.16 87.66 0.54 22.20 16 9 O -0.54 -24.84 10.45 -3.06 -0.03 -24.87 16 10 C 0.03 1.51 2.65 -12.29 -0.03 1.48 16 11 H 0.05 2.44 8.14 -2.38 -0.02 2.42 16 12 C -0.13 -5.35 8.87 71.98 0.64 -4.71 16 13 C -0.53 -28.06 8.37 25.60 0.21 -27.85 16 14 H 0.06 3.17 6.75 -2.91 -0.02 3.15 16 15 C 0.02 1.22 5.30 84.65 0.45 1.67 16 16 N -0.91 -48.38 11.32 21.45 0.24 -48.13 16 17 Si 0.95 42.69 29.54 68.60 2.03 44.72 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 21 C -0.23 -6.73 6.66 22.16 0.15 -6.58 16 22 Cl -0.02 -0.59 28.99 -2.72 -0.08 -0.67 16 23 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 25 H 0.09 1.41 7.99 -2.39 -0.02 1.39 16 26 H 0.08 2.85 6.88 -2.39 -0.02 2.83 16 27 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 28 H 0.07 2.70 6.18 -2.39 -0.01 2.69 16 29 H 0.43 12.56 8.08 -92.71 -0.75 11.81 16 30 H 0.05 1.78 7.44 -2.39 -0.02 1.76 16 31 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 3.60 6.07 -2.39 -0.01 3.58 16 33 H 0.27 13.43 8.31 -92.70 -0.77 12.66 16 Total: -1.00 -60.91 294.01 4.00 -56.91 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 0.40 Total: 14.17 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 5.14 Total: 6.49 kcal Atomic # 7 Polarization: -93.29 SS G_CDS: -3.46 Total: -96.75 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.03 Total: -24.87 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -0.08 Total: -0.67 kcal Total: -60.91 4.00 -56.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892124326.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.152 kcal (2) G-P(sol) polarization free energy of solvation -60.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds