Wall clock time and date at job start Mon Mar 30 2020 01:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.40070 * 126.04950 * 2 1 4 4 C 1.30848 * 108.38806 * 179.72125 * 3 2 1 5 5 C 1.40223 * 108.34265 * 0.44478 * 4 3 2 6 6 N 1.40855 * 126.08435 * 179.82047 * 5 4 3 7 7 C 1.34777 * 120.00004 * 359.68242 * 6 5 4 8 8 O 1.21315 * 120.00033 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00137 * 180.02562 * 7 6 5 10 10 C 1.53002 * 109.47303 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.46972 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.46861 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00371 * 359.97438 * 12 11 10 14 14 C 1.37884 * 120.00204 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99565 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00432 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.47260 * 59.99228 * 16 14 12 18 18 H 1.48496 * 109.47431 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46949 * 299.99554 * 16 14 12 20 20 C 1.35812 * 126.05559 * 180.02562 * 2 1 3 21 21 Cl 1.73602 * 126.22761 * 359.97438 * 20 2 1 22 22 H 1.09003 * 109.46670 * 269.99781 * 1 2 3 23 23 H 1.08994 * 109.47003 * 29.99484 * 1 2 3 24 24 H 1.08995 * 109.46740 * 149.99908 * 1 2 3 25 25 H 1.08001 * 125.82810 * 180.29432 * 4 3 2 26 26 H 0.96999 * 119.99948 * 179.68905 * 6 5 4 27 27 H 1.09000 * 109.46978 * 300.00347 * 9 7 6 28 28 H 1.08996 * 109.47197 * 59.99985 * 9 7 6 29 29 H 1.09000 * 109.46986 * 299.99851 * 10 9 7 30 30 H 1.08996 * 109.47407 * 59.99623 * 10 9 7 31 31 H 1.09000 * 109.47054 * 299.99700 * 11 10 9 32 32 H 1.09004 * 109.47298 * 59.99824 * 11 10 9 33 33 H 0.97002 * 119.99803 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2893 1.1325 0.0000 4 6 3.5361 0.7355 0.0060 5 6 3.5528 -0.6666 -0.0002 6 7 4.7010 -1.4826 -0.0003 7 6 5.9264 -0.9216 -0.0003 8 8 6.0406 0.2862 0.0001 9 6 7.1548 -1.7945 -0.0010 10 6 8.4062 -0.9142 -0.0003 11 6 9.6532 -1.8006 -0.0016 12 6 10.8857 -0.9334 -0.0015 13 1 10.7893 0.1422 -0.0011 14 6 12.1367 -1.5133 -0.0031 15 7 12.2542 -2.8232 -0.0042 16 14 13.6645 -0.4386 -0.0024 17 1 13.6672 0.4171 1.2114 18 1 14.8749 -1.2988 -0.0037 19 1 13.6659 0.4206 -1.2136 20 6 2.2644 -1.0980 -0.0005 21 17 1.7361 -2.7517 -0.0006 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5137 24 1 -0.3632 -0.8900 -0.5138 25 1 4.4042 1.3781 0.0121 26 1 4.6096 -2.4483 -0.0003 27 1 7.1534 -2.4242 0.8887 28 1 7.1531 -2.4235 -0.8912 29 1 8.4077 -0.2842 -0.8898 30 1 8.4077 -0.2855 0.8901 31 1 9.6519 -2.4308 0.8877 32 1 9.6515 -2.4289 -0.8923 33 1 13.1342 -3.2312 -0.0049 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892965720.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:56 Heat of formation + Delta-G solvation = 24.093511 kcal Electronic energy + Delta-G solvation = -17635.379480 eV Core-core repulsion = 14530.600249 eV Total energy + Delta-G solvation = -3104.779231 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.60155 -39.44638 -37.22322 -35.02865 -34.20358 -33.08056 -32.02034 -29.70455 -28.01933 -26.53383 -23.97394 -22.19743 -21.44022 -20.33255 -19.73496 -17.90567 -16.82179 -16.30957 -16.16046 -15.99714 -15.35376 -14.52906 -14.38465 -13.90190 -13.70217 -13.57593 -13.11938 -13.06384 -12.31088 -12.27069 -12.01180 -11.83011 -11.43864 -11.02734 -10.85109 -10.77741 -10.64429 -10.54899 -9.75886 -9.67634 -9.55893 -9.30644 -9.04729 -8.31179 -7.93016 -5.97156 -3.98596 1.13018 1.26177 2.26813 2.30107 3.04180 3.13040 3.37509 3.41008 3.44821 4.24135 4.49867 4.66719 4.78399 4.92768 5.03252 5.21533 5.25109 5.39035 5.65995 5.66939 5.97021 6.20233 6.39455 6.61195 6.70377 6.90373 7.14602 7.22871 7.43555 7.70758 7.83314 8.03305 8.25853 8.46945 9.08333 9.65388 11.14333 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.045074 B = 0.003074 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.048718 B = 9107.726387 C = 9697.723133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.369 5.369 3 N -0.262 5.262 4 C 0.061 3.939 5 C 0.042 3.958 6 N -0.652 5.652 7 C 0.518 3.482 8 O -0.522 6.522 9 C -0.135 4.135 10 C -0.096 4.096 11 C 0.020 3.980 12 C -0.519 4.519 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C 0.070 3.930 21 Cl -0.005 7.005 22 H 0.078 0.922 23 H 0.095 0.905 24 H 0.087 0.913 25 H 0.217 0.783 26 H 0.411 0.589 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.016 0.984 32 H 0.016 0.984 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.287 -0.563 -0.043 25.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.157 5.157 3 N -0.085 5.085 4 C -0.126 4.126 5 C -0.064 4.064 6 N -0.298 5.298 7 C 0.307 3.693 8 O -0.396 6.396 9 C -0.175 4.175 10 C -0.134 4.134 11 C -0.017 4.017 12 C -0.557 4.557 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.202 1.202 20 C -0.085 4.085 21 Cl 0.023 6.977 22 H 0.096 0.904 23 H 0.113 0.887 24 H 0.105 0.895 25 H 0.233 0.767 26 H 0.247 0.753 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -25.972 0.988 -0.047 25.991 hybrid contribution 1.133 -1.037 0.009 1.536 sum -24.839 -0.049 -0.038 24.839 Atomic orbital electron populations 1.21895 0.73295 1.04809 1.03747 1.48315 1.06617 1.01854 1.58942 1.77580 1.01388 1.06030 1.23500 1.24553 0.95652 0.92902 0.99484 1.17308 0.84983 0.91668 1.12472 1.43264 1.03292 1.09463 1.73822 1.21466 0.83829 0.89679 0.74297 1.90557 1.86093 1.15211 1.47784 1.21864 0.92152 0.99239 1.04237 1.21475 0.92181 0.97790 1.01916 1.19126 0.90634 0.94708 0.97188 1.21233 0.90956 0.93222 1.50323 0.92580 1.25017 0.99154 0.94947 0.95364 1.69951 1.23636 1.09078 1.51092 0.86652 0.82290 0.80342 0.78697 1.20219 1.21357 1.20216 1.20815 0.90144 0.83246 1.14255 1.98394 1.90664 1.11299 1.97310 0.90379 0.88659 0.89456 0.76662 0.75314 0.88871 0.88867 0.92484 0.92479 0.96554 0.96555 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.64 11.33 59.85 0.68 1.32 16 2 N -0.37 -4.02 4.04 -64.60 -0.26 -4.29 16 3 N -0.26 -3.52 12.56 30.70 0.39 -3.14 16 4 C 0.06 0.87 10.84 -17.23 -0.19 0.68 16 5 C 0.04 0.55 6.90 -83.81 -0.58 -0.02 16 6 N -0.65 -8.08 5.48 -9.99 -0.05 -8.14 16 7 C 0.52 7.89 7.80 -10.99 -0.09 7.81 16 8 O -0.52 -9.50 13.14 5.53 0.07 -9.42 16 9 C -0.14 -2.09 5.70 -27.88 -0.16 -2.25 16 10 C -0.10 -1.97 4.44 -26.73 -0.12 -2.09 16 11 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 12 C -0.52 -14.83 9.11 -34.44 -0.31 -15.15 16 13 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 16 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C 0.07 0.78 7.51 -16.64 -0.12 0.65 16 21 Cl 0.00 -0.04 28.56 -51.86 -1.48 -1.52 16 22 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.09 0.39 7.83 -51.93 -0.41 -0.02 16 25 H 0.22 3.25 5.92 -52.49 -0.31 2.94 16 26 H 0.41 3.95 8.58 -40.82 -0.35 3.60 16 27 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 30 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 305.41 15.07 4.60 4.60 Total: -1.00 -33.25 305.41 -6.13 -39.38 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -3.99 Total: -1.02 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -1.12 Total: -7.16 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: 0.81 Total: -41.74 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.07 Total: -9.42 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.48 Total: -1.52 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.25 -6.13 -39.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892965720.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.472 kcal (2) G-P(sol) polarization free energy of solvation -33.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds