Wall clock time and date at job start Mon Mar 30 2020 01:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.40070 * 126.04950 * 2 1 4 4 C 1.30848 * 108.38806 * 179.72125 * 3 2 1 5 5 C 1.40223 * 108.34265 * 0.44478 * 4 3 2 6 6 N 1.40855 * 126.08435 * 179.82047 * 5 4 3 7 7 C 1.34777 * 120.00004 * 359.68242 * 6 5 4 8 8 O 1.21315 * 120.00033 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00137 * 180.02562 * 7 6 5 10 10 C 1.53002 * 109.47303 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.46972 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.46861 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00371 * 359.97438 * 12 11 10 14 14 C 1.37884 * 120.00204 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99565 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00432 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.47260 * 59.99228 * 16 14 12 18 18 H 1.48496 * 109.47431 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46949 * 299.99554 * 16 14 12 20 20 C 1.35812 * 126.05559 * 180.02562 * 2 1 3 21 21 Cl 1.73602 * 126.22761 * 359.97438 * 20 2 1 22 22 H 1.09003 * 109.46670 * 269.99781 * 1 2 3 23 23 H 1.08994 * 109.47003 * 29.99484 * 1 2 3 24 24 H 1.08995 * 109.46740 * 149.99908 * 1 2 3 25 25 H 1.08001 * 125.82810 * 180.29432 * 4 3 2 26 26 H 0.96999 * 119.99948 * 179.68905 * 6 5 4 27 27 H 1.09000 * 109.46978 * 300.00347 * 9 7 6 28 28 H 1.08996 * 109.47197 * 59.99985 * 9 7 6 29 29 H 1.09000 * 109.46986 * 299.99851 * 10 9 7 30 30 H 1.08996 * 109.47407 * 59.99623 * 10 9 7 31 31 H 1.09000 * 109.47054 * 299.99700 * 11 10 9 32 32 H 1.09004 * 109.47298 * 59.99824 * 11 10 9 33 33 H 0.97002 * 119.99803 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2893 1.1325 0.0000 4 6 3.5361 0.7355 0.0060 5 6 3.5528 -0.6666 -0.0002 6 7 4.7010 -1.4826 -0.0003 7 6 5.9264 -0.9216 -0.0003 8 8 6.0406 0.2862 0.0001 9 6 7.1548 -1.7945 -0.0010 10 6 8.4062 -0.9142 -0.0003 11 6 9.6532 -1.8006 -0.0016 12 6 10.8857 -0.9334 -0.0015 13 1 10.7893 0.1422 -0.0011 14 6 12.1367 -1.5133 -0.0031 15 7 12.2542 -2.8232 -0.0042 16 14 13.6645 -0.4386 -0.0024 17 1 13.6672 0.4171 1.2114 18 1 14.8749 -1.2988 -0.0037 19 1 13.6659 0.4206 -1.2136 20 6 2.2644 -1.0980 -0.0005 21 17 1.7361 -2.7517 -0.0006 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5137 24 1 -0.3632 -0.8900 -0.5138 25 1 4.4042 1.3781 0.0121 26 1 4.6096 -2.4483 -0.0003 27 1 7.1534 -2.4242 0.8887 28 1 7.1531 -2.4235 -0.8912 29 1 8.4077 -0.2842 -0.8898 30 1 8.4077 -0.2855 0.8901 31 1 9.6519 -2.4308 0.8877 32 1 9.6515 -2.4289 -0.8923 33 1 13.1342 -3.2312 -0.0049 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892965720.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:56 Heat of formation + Delta-G solvation = 1.645347 kcal Electronic energy + Delta-G solvation = -17636.352906 eV Core-core repulsion = 14530.600249 eV Total energy + Delta-G solvation = -3105.752657 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.55198 -40.62334 -38.01178 -36.29617 -35.85829 -34.14926 -33.74503 -30.81805 -29.54545 -27.48871 -25.75117 -23.39537 -22.49106 -21.79198 -21.00984 -18.88317 -18.47407 -17.72306 -17.16094 -17.09755 -16.54220 -16.46548 -15.38508 -15.14321 -15.06238 -14.63337 -14.21743 -13.95185 -13.75765 -13.60281 -13.14794 -13.05560 -12.76144 -12.59625 -12.47845 -12.40673 -11.93397 -11.89407 -11.49078 -11.41336 -11.23644 -10.80627 -10.50599 -10.42521 -8.89926 -8.17437 -6.26749 0.28042 0.34519 1.20473 1.41805 1.44351 1.48560 1.52427 1.93359 2.09922 2.44231 3.15909 3.47570 3.75020 3.91496 4.10572 4.31884 4.33337 4.36238 4.46484 4.63196 4.82259 4.97911 5.01899 5.14869 5.26121 5.56128 5.58899 5.61623 5.80999 5.91502 6.25523 6.31695 6.44690 6.89229 7.14246 7.41710 8.93875 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.045074 B = 0.003074 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.048718 B = 9107.726387 C = 9697.723133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.360 5.360 3 N -0.281 5.281 4 C 0.042 3.958 5 C 0.014 3.986 6 N -0.634 5.634 7 C 0.521 3.479 8 O -0.558 6.558 9 C -0.125 4.125 10 C -0.083 4.083 11 C 0.025 3.975 12 C -0.547 4.547 13 H 0.052 0.948 14 C 0.003 3.997 15 N -0.930 5.930 16 Si 0.959 3.041 17 H -0.270 1.270 18 H -0.280 1.280 19 H -0.269 1.269 20 C 0.084 3.916 21 Cl 0.027 6.973 22 H 0.096 0.904 23 H 0.106 0.894 24 H 0.109 0.891 25 H 0.200 0.800 26 H 0.426 0.574 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.002 0.998 32 H 0.002 0.998 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.808 -1.234 -0.037 26.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.149 5.149 3 N -0.105 5.105 4 C -0.144 4.144 5 C -0.092 4.092 6 N -0.281 5.281 7 C 0.311 3.689 8 O -0.435 6.435 9 C -0.165 4.165 10 C -0.121 4.121 11 C -0.012 4.012 12 C -0.585 4.585 13 H 0.071 0.929 14 C -0.195 4.195 15 N -0.570 5.570 16 Si 0.784 3.216 17 H -0.195 1.195 18 H -0.205 1.205 19 H -0.195 1.195 20 C -0.072 4.072 21 Cl 0.055 6.945 22 H 0.114 0.886 23 H 0.125 0.875 24 H 0.127 0.873 25 H 0.216 0.784 26 H 0.264 0.736 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -27.545 0.298 -0.041 27.547 hybrid contribution 1.439 -0.900 0.009 1.697 sum -26.106 -0.601 -0.032 26.113 Atomic orbital electron populations 1.22361 0.70574 1.06526 1.05491 1.48768 1.08049 1.01136 1.56912 1.77519 1.01421 1.07271 1.24284 1.24349 0.95671 0.93624 1.00720 1.17378 0.85767 0.91363 1.14698 1.42917 1.02365 1.10111 1.72742 1.21245 0.84534 0.88977 0.74188 1.90564 1.86640 1.16602 1.49734 1.21675 0.89940 0.98527 1.06350 1.21178 0.92851 0.97404 1.00692 1.19019 0.91949 0.94577 0.95632 1.21696 0.92684 0.93584 1.50558 0.92944 1.25884 1.02447 0.96331 0.94804 1.70057 1.24592 1.10660 1.51692 0.85591 0.78314 0.78656 0.79046 1.19463 1.20520 1.19453 1.20939 0.89629 0.84687 1.11955 1.98412 1.90304 1.08763 1.97068 0.88572 0.87528 0.87255 0.78355 0.73599 0.86776 0.86774 0.93729 0.93716 0.97970 0.97976 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.86 11.33 127.77 1.45 2.30 16 2 N -0.36 -7.20 4.04 -358.28 -1.45 -8.65 16 3 N -0.28 -7.44 12.56 -56.78 -0.71 -8.16 16 4 C 0.04 1.21 10.84 85.32 0.92 2.14 16 5 C 0.01 0.36 6.90 37.62 0.26 0.62 16 6 N -0.63 -14.97 5.48 -303.91 -1.66 -16.64 16 7 C 0.52 15.69 7.80 87.66 0.68 16.37 16 8 O -0.56 -20.82 13.14 -3.14 -0.04 -20.86 16 9 C -0.13 -3.78 5.70 29.85 0.17 -3.60 16 10 C -0.08 -3.49 4.44 30.59 0.14 -3.35 16 11 C 0.03 1.31 4.97 29.85 0.15 1.46 16 12 C -0.55 -31.77 9.11 25.60 0.23 -31.53 16 13 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 14 C 0.00 0.19 5.46 84.66 0.46 0.65 16 15 N -0.93 -56.12 13.29 21.45 0.28 -55.83 16 16 Si 0.96 44.96 29.54 68.60 2.03 46.98 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 19 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 20 C 0.08 1.71 7.51 83.53 0.63 2.34 16 21 Cl 0.03 0.37 28.56 -2.72 -0.08 0.29 16 22 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 23 H 0.11 0.82 8.14 -2.39 -0.02 0.81 16 24 H 0.11 0.59 7.83 -2.39 -0.02 0.57 16 25 H 0.20 6.37 5.92 -2.91 -0.02 6.36 16 26 H 0.43 7.26 8.58 -92.71 -0.80 6.46 16 27 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 28 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 29 H 0.04 1.95 8.10 -2.39 -0.02 1.93 16 30 H 0.04 1.96 8.10 -2.39 -0.02 1.94 16 31 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 33 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -72.37 305.41 3.80 -68.57 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: 0.34 Total: 6.90 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 5.09 Total: -12.61 kcal Atomic # 7 Polarization: -85.74 SS G_CDS: -3.54 Total: -89.28 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.04 Total: -20.86 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 17 Polarization: 0.37 SS G_CDS: -0.08 Total: 0.29 kcal Total: -72.37 3.80 -68.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892965720.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.219 kcal (2) G-P(sol) polarization free energy of solvation -72.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds