Wall clock time and date at job start Mon Mar 30 2020 01:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42899 * 109.47344 * 2 1 4 4 C 1.42902 * 113.99889 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.46750 * 180.02562 * 4 3 2 6 6 N 1.31784 * 119.07601 * 90.00359 * 5 4 3 7 7 C 1.32662 * 120.98880 * 180.02562 * 6 5 4 8 8 Cl 1.73602 * 120.41626 * 180.02562 * 7 6 5 9 9 C 1.38317 * 119.16348 * 359.97438 * 7 6 5 10 10 C 1.39523 * 118.32344 * 0.02562 * 9 7 6 11 11 N 1.38562 * 120.52393 * 179.97438 * 10 9 7 12 12 C 1.46498 * 119.99681 * 0.27718 * 11 10 9 13 13 C 1.50700 * 109.46769 * 179.72378 * 12 11 10 14 14 H 1.07997 * 120.00357 * 359.97438 * 13 12 11 15 15 C 1.37886 * 119.99789 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99860 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00087 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47105 * 89.99950 * 17 15 13 19 19 H 1.48499 * 109.47427 * 210.00198 * 17 15 13 20 20 H 1.48508 * 109.47164 * 330.00232 * 17 15 13 21 21 N 1.31739 * 119.07819 * 270.27698 * 5 4 3 22 22 H 1.09001 * 109.47122 * 179.97438 * 1 2 3 23 23 H 1.09009 * 109.46932 * 299.99698 * 1 2 3 24 24 H 1.08991 * 109.47339 * 59.99414 * 1 2 3 25 25 H 1.09009 * 109.46932 * 240.00302 * 2 1 3 26 26 H 1.08998 * 109.47075 * 120.00846 * 2 1 3 27 27 H 1.08996 * 109.47078 * 60.00386 * 4 3 2 28 28 H 1.08996 * 109.47201 * 299.99939 * 4 3 2 29 29 H 1.08001 * 120.83532 * 180.02562 * 9 7 6 30 30 H 0.97001 * 119.99874 * 179.97438 * 11 10 9 31 31 H 1.09004 * 109.46963 * 299.72171 * 12 11 10 32 32 H 1.08994 * 109.47567 * 59.72323 * 12 11 10 33 33 H 0.96999 * 120.00067 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8195 2.9161 0.0012 6 7 3.9843 3.5345 1.1532 7 6 4.3256 4.8157 1.1980 8 17 4.5394 5.6154 2.7239 9 6 4.5101 5.5059 0.0136 10 6 4.3273 4.8200 -1.1876 11 7 4.4998 5.4670 -2.4007 12 6 4.8828 6.8808 -2.4288 13 6 5.0104 7.3382 -3.8590 14 1 4.8252 6.6451 -4.6663 15 6 5.3637 8.6417 -4.1370 16 7 5.5898 9.4856 -3.1539 17 14 5.5226 9.2086 -5.9097 18 1 4.2132 9.7242 -6.3838 19 1 6.5397 10.2873 -5.9953 20 1 5.9413 8.0650 -6.7596 21 7 3.9796 3.5365 -1.1499 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8898 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5140 0.8899 27 1 3.8340 0.9764 -0.8892 28 1 3.8333 0.9766 0.8908 29 1 4.7886 6.5493 0.0185 30 1 4.3711 4.9827 -3.2313 31 1 4.1201 7.4739 -1.9243 32 1 5.8381 7.0086 -1.9199 33 1 5.8387 10.4025 -3.3494 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893545303.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:42 Heat of formation + Delta-G solvation = -11.504482 kcal Electronic energy + Delta-G solvation = -17714.036161 eV Core-core repulsion = 14607.713284 eV Total energy + Delta-G solvation = -3106.322876 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.66100 -38.02824 -36.66786 -35.96968 -33.18309 -32.67674 -31.63355 -30.49947 -27.29719 -26.99932 -23.35320 -23.25668 -22.90237 -21.24798 -18.26211 -17.35962 -16.83814 -16.28282 -15.93244 -15.07537 -14.94294 -14.79370 -14.72309 -14.21779 -13.49547 -13.31149 -13.11582 -12.74514 -12.44941 -12.21661 -11.96206 -11.52830 -11.33189 -11.20073 -11.09078 -11.04505 -10.51142 -10.44507 -10.28077 -9.71483 -9.59048 -9.35729 -9.03234 -8.74282 -7.50172 -6.34723 -4.41684 1.12961 1.61949 1.89243 3.16651 3.23206 3.25331 3.37829 3.69639 4.16713 4.23433 4.45371 4.86704 4.92798 5.02298 5.03260 5.18008 5.23250 5.31303 5.37321 5.54159 5.73150 5.78814 5.82620 5.97732 6.35354 6.85093 7.03749 7.10095 7.13416 7.41971 7.72107 7.83630 8.27220 8.48187 8.69716 9.25542 10.75584 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.017307 B = 0.004307 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.472212 B = 6498.936911 C = 7861.968464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.379 6.379 4 C 0.141 3.859 5 C 0.374 3.626 6 N -0.561 5.561 7 C 0.247 3.753 8 Cl -0.029 7.029 9 C -0.269 4.269 10 C 0.450 3.550 11 N -0.676 5.676 12 C 0.246 3.754 13 C -0.545 4.545 14 H 0.067 0.933 15 C 0.067 3.933 16 N -0.886 5.886 17 Si 0.908 3.092 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.271 1.271 21 N -0.571 5.571 22 H 0.070 0.930 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.156 0.844 30 H 0.405 0.595 31 H 0.031 0.969 32 H 0.031 0.969 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.285 -13.989 7.223 16.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 O -0.297 6.297 4 C 0.063 3.937 5 C 0.103 3.897 6 N -0.286 5.286 7 C 0.080 3.920 8 Cl -0.001 7.001 9 C -0.300 4.300 10 C 0.202 3.798 11 N -0.301 5.301 12 C 0.126 3.874 13 C -0.583 4.583 14 H 0.085 0.915 15 C -0.138 4.138 16 N -0.523 5.523 17 Si 0.735 3.265 18 H -0.203 1.203 19 H -0.209 1.209 20 H -0.196 1.196 21 N -0.299 5.299 22 H 0.089 0.911 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.174 0.826 30 H 0.240 0.760 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.516 -14.189 7.344 16.603 hybrid contribution 0.515 1.097 -1.019 1.584 sum -4.002 -13.092 6.325 15.080 Atomic orbital electron populations 1.21737 0.93712 1.02074 1.03334 1.22472 0.95640 0.83451 1.00186 1.87954 1.19620 1.26651 1.95492 1.20837 0.82398 0.88489 1.02019 1.21977 0.90355 0.95293 0.82082 1.67430 1.21445 1.09156 1.30544 1.21418 0.93640 0.89810 0.87178 1.98392 1.94832 1.76920 1.29929 1.21938 1.13615 1.03902 0.90527 1.18607 0.86238 0.87204 0.87708 1.45530 1.67891 1.13375 1.03311 1.19424 0.95814 0.73295 0.98885 1.21108 1.49635 0.96564 0.91027 0.91538 1.24921 0.94416 0.96145 0.98285 1.69929 1.45370 1.05375 1.31613 0.86338 0.78112 0.78562 0.83532 1.20301 1.20872 1.19615 1.67736 1.22594 1.09136 1.30432 0.91118 0.91816 0.91766 0.93158 0.93198 0.90530 0.90604 0.82607 0.75970 0.95080 0.95085 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 37.16 0.38 -0.94 16 2 C 0.06 0.58 6.66 37.16 0.25 0.83 16 3 O -0.38 -5.39 10.33 -35.23 -0.36 -5.76 16 4 C 0.14 1.91 6.37 36.01 0.23 2.14 16 5 C 0.37 6.54 7.27 -157.25 -1.14 5.39 16 6 N -0.56 -10.10 10.33 -7.93 -0.08 -10.18 16 7 C 0.25 4.42 7.33 -17.16 -0.13 4.30 16 8 Cl -0.03 -0.45 29.15 -51.86 -1.51 -1.96 16 9 C -0.27 -5.11 9.20 -39.07 -0.36 -5.47 16 10 C 0.45 8.94 7.71 -154.76 -1.19 7.74 16 11 N -0.68 -13.95 5.70 -61.46 -0.35 -14.30 16 12 C 0.25 5.85 4.68 -5.19 -0.02 5.83 16 13 C -0.55 -13.99 9.28 -34.44 -0.32 -14.31 16 14 H 0.07 1.64 7.60 -52.49 -0.40 1.24 16 15 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -24.28 13.29 55.43 0.74 -23.55 16 17 Si 0.91 20.09 29.54 -169.99 -5.02 15.07 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 N -0.57 -10.82 10.37 -9.98 -0.10 -10.92 16 22 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.16 2.95 6.86 -52.49 -0.36 2.59 16 30 H 0.40 7.93 8.45 -40.82 -0.34 7.59 16 31 H 0.03 0.79 7.98 -51.93 -0.41 0.37 16 32 H 0.03 0.78 7.97 -51.93 -0.41 0.37 16 33 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 308.40 15.07 4.65 4.65 Total: -1.00 -28.26 308.40 -8.48 -36.73 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -4.03 Total: 3.05 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: -2.40 Total: 7.16 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: 0.20 Total: -58.95 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.36 Total: -5.76 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.51 Total: -1.96 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.26 -8.48 -36.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893545303.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.229 kcal (2) G-P(sol) polarization free energy of solvation -28.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds