Wall clock time and date at job start Mon Mar 30 2020 01:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35078 * 125.97560 * 2 1 4 4 C 1.35293 * 107.84188 * 180.02562 * 3 2 1 5 5 Cl 1.73599 * 126.06953 * 179.97438 * 4 3 2 6 6 C 1.40472 * 107.85546 * 0.26831 * 4 3 2 7 7 N 1.40173 * 125.96302 * 179.73985 * 6 4 3 8 8 C 1.34782 * 119.99966 * 179.97438 * 7 6 4 9 9 O 1.21297 * 119.99615 * 359.97438 * 8 7 6 10 10 C 1.50701 * 120.00071 * 179.97438 * 8 7 6 11 11 C 1.52998 * 109.47182 * 179.97438 * 10 8 7 12 12 C 1.52990 * 109.47403 * 179.97438 * 11 10 8 13 13 C 1.50697 * 109.47552 * 180.02562 * 12 11 10 14 14 H 1.08007 * 119.99755 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00439 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99952 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00281 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47169 * 89.99831 * 17 15 13 19 19 H 1.48498 * 109.47312 * 209.99670 * 17 15 13 20 20 H 1.48495 * 109.47057 * 330.00082 * 17 15 13 21 21 N 1.31222 * 108.06550 * 359.55114 * 6 4 3 22 22 H 1.09001 * 109.47551 * 89.99727 * 1 2 3 23 23 H 1.09000 * 109.46766 * 209.99659 * 1 2 3 24 24 H 1.09000 * 109.46878 * 329.99499 * 1 2 3 25 25 H 1.07994 * 126.07953 * 0.04454 * 3 2 1 26 26 H 0.97000 * 120.00741 * 359.97438 * 7 6 4 27 27 H 1.09002 * 109.47212 * 299.99847 * 10 8 7 28 28 H 1.09001 * 109.47267 * 59.99536 * 10 8 7 29 29 H 1.09002 * 109.47197 * 300.00193 * 11 10 8 30 30 H 1.09001 * 109.47124 * 59.99784 * 11 10 8 31 31 H 1.09002 * 109.47266 * 300.00352 * 12 11 10 32 32 H 1.09002 * 109.47491 * 60.00059 * 12 11 10 33 33 H 0.96994 * 119.99834 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2585 1.0931 0.0000 4 6 3.5442 0.6721 -0.0006 5 17 4.9523 1.6875 -0.0014 6 6 3.5374 -0.7326 -0.0072 7 7 4.6679 -1.5613 -0.0150 8 6 4.5214 -2.9011 -0.0203 9 8 3.4112 -3.3897 -0.0179 10 6 5.7368 -3.7920 -0.0293 11 6 5.2954 -5.2569 -0.0333 12 6 6.5292 -6.1614 -0.0431 13 6 6.0945 -7.6043 -0.0477 14 1 5.0431 -7.8515 -0.0444 15 6 7.0387 -8.6089 -0.0560 16 7 8.3190 -8.3079 -0.0605 17 14 6.4998 -10.3974 -0.0610 18 1 6.3506 -10.8656 -1.4624 19 1 7.5210 -11.2241 0.6310 20 1 5.1992 -10.5244 0.6443 21 7 2.2879 -1.1335 -0.0007 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 1.9257 2.1205 0.0007 26 1 5.5558 -1.1706 -0.0166 27 1 6.3300 -3.5885 -0.9209 28 1 6.3374 -3.5963 0.8590 29 1 4.7025 -5.4602 0.8585 30 1 4.6946 -5.4529 -0.9215 31 1 7.1218 -5.9580 -0.9351 32 1 7.1304 -5.9656 0.8448 33 1 8.9833 -9.0147 -0.0660 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893933021.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:58 Heat of formation + Delta-G solvation = 3.993114 kcal Electronic energy + Delta-G solvation = -17616.444034 eV Core-core repulsion = 14510.793184 eV Total energy + Delta-G solvation = -3105.650850 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.48371 -40.68852 -37.45661 -36.39184 -35.96473 -34.09337 -33.21907 -31.06723 -29.87650 -27.44681 -25.81508 -23.42253 -22.51236 -21.66674 -20.74603 -18.95113 -18.43335 -17.72183 -17.10813 -17.02953 -16.47356 -16.45036 -15.45162 -15.13092 -15.09354 -14.68532 -14.27915 -14.05545 -13.76973 -13.42807 -13.15513 -12.72024 -12.60160 -12.54503 -12.42028 -12.34489 -11.87333 -11.64284 -11.55733 -11.45059 -11.25628 -10.83920 -10.53478 -9.97689 -9.21565 -8.19735 -6.29427 0.69393 0.93656 1.10472 1.39807 1.40923 1.48732 1.52709 1.96603 2.20671 2.42374 3.13322 3.45893 3.67031 3.98252 4.18177 4.24703 4.33593 4.45369 4.47802 4.61034 4.72699 4.80569 4.95246 5.08308 5.19096 5.47183 5.54963 5.76042 5.87094 5.91141 6.02967 6.28512 6.66421 6.85853 7.11174 7.39037 8.91808 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.032517 B = 0.003225 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.879137 B = 8680.135117 C = 9509.959361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.368 5.368 3 C 0.110 3.890 4 C -0.225 4.225 5 Cl -0.028 7.028 6 C 0.293 3.707 7 N -0.632 5.632 8 C 0.511 3.489 9 O -0.535 6.535 10 C -0.124 4.124 11 C -0.083 4.083 12 C 0.026 3.974 13 C -0.548 4.548 14 H 0.050 0.950 15 C 0.004 3.996 16 N -0.929 5.929 17 Si 0.961 3.039 18 H -0.272 1.272 19 H -0.277 1.277 20 H -0.269 1.269 21 N -0.323 5.323 22 H 0.091 0.909 23 H 0.081 0.919 24 H 0.133 0.867 25 H 0.235 0.765 26 H 0.435 0.565 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.004 0.996 32 H 0.004 0.996 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.723 26.050 0.197 28.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.151 5.151 3 C -0.039 4.039 4 C -0.266 4.266 5 Cl 0.000 7.000 6 C 0.036 3.964 7 N -0.284 5.284 8 C 0.299 3.701 9 O -0.408 6.408 10 C -0.163 4.163 11 C -0.121 4.121 12 C -0.011 4.011 13 C -0.586 4.586 14 H 0.068 0.932 15 C -0.194 4.194 16 N -0.569 5.569 17 Si 0.786 3.214 18 H -0.197 1.197 19 H -0.203 1.203 20 H -0.194 1.194 21 N -0.153 5.153 22 H 0.109 0.891 23 H 0.100 0.900 24 H 0.151 0.849 25 H 0.251 0.749 26 H 0.275 0.725 27 H 0.135 0.865 28 H 0.135 0.865 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.140 24.625 0.205 27.912 hybrid contribution 1.103 -0.259 -0.034 1.134 sum -12.037 24.365 0.172 27.177 Atomic orbital electron populations 1.22327 0.70500 1.06380 1.05113 1.48631 1.08134 1.02521 1.55801 1.22880 0.87942 0.95655 0.97438 1.20485 0.90724 0.88242 1.27156 1.98324 1.37419 1.66247 1.98026 1.19459 0.88100 0.89055 0.99830 1.43103 1.07353 1.04984 1.72999 1.21556 0.92040 0.82073 0.74410 1.90759 1.28471 1.74483 1.47063 1.21701 0.94593 0.93445 1.06592 1.21178 0.98125 0.92371 1.00406 1.19012 0.93035 0.93245 0.95786 1.21689 0.92914 0.93269 1.50737 0.93155 1.25892 0.94950 1.03893 0.94706 1.70062 1.00946 1.34290 1.51574 0.85507 0.78181 0.79194 0.78538 1.19724 1.20262 1.19353 1.78134 0.99804 1.07844 1.29553 0.89099 0.89999 0.84886 0.74864 0.72506 0.86492 0.86494 0.94045 0.94037 0.97802 0.97787 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.95 11.47 127.77 1.47 2.42 16 2 N -0.37 -7.33 4.01 -369.49 -1.48 -8.82 16 3 C 0.11 1.64 11.46 83.51 0.96 2.60 16 4 C -0.23 -4.65 6.67 22.13 0.15 -4.50 16 5 Cl -0.03 -0.47 29.18 -2.72 -0.08 -0.55 16 6 C 0.29 8.33 7.82 133.33 1.04 9.37 16 7 N -0.63 -17.36 5.45 -307.43 -1.68 -19.03 16 8 C 0.51 17.66 7.80 87.66 0.68 18.34 16 9 O -0.54 -23.46 14.70 -3.08 -0.05 -23.51 16 10 C -0.12 -4.08 5.70 29.85 0.17 -3.91 16 11 C -0.08 -3.69 4.44 30.59 0.14 -3.55 16 12 C 0.03 1.40 4.97 29.84 0.15 1.55 16 13 C -0.55 -32.58 9.11 25.60 0.23 -32.35 16 14 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 15 C 0.00 0.21 5.46 84.65 0.46 0.67 16 16 N -0.93 -56.67 13.29 21.45 0.28 -56.39 16 17 Si 0.96 45.65 29.54 68.60 2.03 47.67 16 18 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 21 N -0.32 -10.26 10.80 -54.40 -0.59 -10.84 16 22 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 23 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.13 0.16 8.14 -2.39 -0.02 0.14 16 25 H 0.24 0.92 8.06 -2.91 -0.02 0.89 16 26 H 0.43 8.79 8.69 -92.71 -0.81 7.99 16 27 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 28 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 29 H 0.04 1.94 8.10 -2.39 -0.02 1.92 16 30 H 0.04 1.94 8.10 -2.39 -0.02 1.92 16 31 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -81.70 309.18 4.21 -77.49 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: 0.32 Total: 3.33 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: 5.45 Total: -9.36 kcal Atomic # 7 Polarization: -91.62 SS G_CDS: -3.46 Total: -95.08 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.05 Total: -23.51 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -0.08 Total: -0.55 kcal Total: -81.70 4.21 -77.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893933021.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.484 kcal (2) G-P(sol) polarization free energy of solvation -81.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds