Wall clock time and date at job start Mon Mar 30 2020 01:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.47035 * 2 1 4 4 C 1.35082 * 125.97427 * 125.00120 * 3 2 1 5 5 C 1.35279 * 107.83923 * 179.97438 * 4 3 2 6 6 Cl 1.73600 * 126.07111 * 180.02562 * 5 4 3 7 7 C 1.40463 * 107.86151 * 0.02562 * 5 4 3 8 8 N 1.40179 * 125.96938 * 179.97438 * 7 5 4 9 9 C 1.34775 * 120.00196 * 180.02562 * 8 7 5 10 10 O 1.21296 * 120.00254 * 359.97438 * 9 8 7 11 11 C 1.50702 * 120.00202 * 180.02562 * 9 8 7 12 12 C 1.52996 * 109.47013 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.47013 * 179.97438 * 12 11 9 14 14 H 1.08001 * 119.99739 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00404 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99758 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00391 * 180.02562 * 15 13 12 18 18 H 1.48488 * 109.47294 * 89.99623 * 17 15 13 19 19 H 1.48503 * 109.47167 * 209.99996 * 17 15 13 20 20 H 1.48502 * 109.46924 * 329.99266 * 17 15 13 21 21 N 1.31234 * 108.06460 * 359.74189 * 7 5 4 22 22 H 1.09004 * 109.47059 * 59.99372 * 1 2 3 23 23 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46930 * 299.99770 * 1 2 3 25 25 H 1.09004 * 109.46930 * 240.00230 * 2 1 3 26 26 H 1.09000 * 109.47312 * 120.00174 * 2 1 3 27 27 H 1.08004 * 126.07794 * 359.97438 * 4 3 2 28 28 H 0.97000 * 120.00127 * 359.97438 * 8 7 5 29 29 H 1.09003 * 109.46940 * 299.99800 * 11 9 8 30 30 H 1.09005 * 109.47099 * 59.99928 * 11 9 8 31 31 H 1.09003 * 109.47219 * 299.99769 * 12 11 9 32 32 H 1.09002 * 109.47631 * 60.00048 * 12 11 9 33 33 H 0.97003 * 119.99691 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8740 1.9204 0.8955 5 6 3.0753 3.2128 0.5502 6 17 4.0944 4.3460 1.3814 7 6 2.3133 3.4751 -0.6002 8 7 2.2419 4.6995 -1.2790 9 6 1.4679 4.8177 -2.3760 10 8 0.8335 3.8645 -2.7763 11 6 1.3916 6.1338 -3.1062 12 6 0.4519 5.9977 -4.3059 13 6 0.3751 7.3141 -5.0356 14 1 0.9398 8.1629 -4.6790 15 6 -0.4167 7.4351 -6.1578 16 7 -1.1046 6.4015 -6.5917 17 14 -0.5113 9.0665 -7.0628 18 1 0.5440 9.1157 -8.1062 19 1 -1.8453 9.2018 -7.7012 20 1 -0.3082 10.1789 -6.1003 21 7 1.6837 2.3723 -0.9315 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.3185 1.4103 1.7374 28 1 2.7489 5.4619 -0.9588 29 1 1.0120 6.9017 -2.4321 30 1 2.3858 6.4147 -3.4538 31 1 0.8320 5.2299 -4.9798 32 1 -0.5424 5.7167 -3.9587 33 1 -1.6614 6.4866 -7.3815 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894900119.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:08 Heat of formation + Delta-G solvation = 4.819650 kcal Electronic energy + Delta-G solvation = -17920.846666 eV Core-core repulsion = 14815.231657 eV Total energy + Delta-G solvation = -3105.615009 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.47875 -40.61805 -37.46584 -36.36322 -35.56163 -34.52653 -33.00432 -31.14960 -29.92790 -27.86188 -25.16151 -23.66785 -22.68736 -21.82487 -20.62688 -18.94765 -18.66119 -17.41447 -17.17900 -16.85941 -16.45082 -16.19276 -15.74793 -15.06256 -14.92552 -14.65419 -14.31134 -14.19420 -13.63321 -13.27460 -13.04079 -12.83011 -12.70865 -12.47910 -12.43024 -12.22136 -11.93926 -11.79501 -11.65775 -11.53539 -11.30107 -10.78803 -10.56460 -9.93781 -9.19719 -8.17707 -6.31920 0.73359 0.93988 1.15425 1.42870 1.45994 1.52269 1.57135 2.02177 2.22270 2.44686 3.15664 3.43837 3.76953 3.94697 4.08170 4.29436 4.35589 4.36413 4.45904 4.51907 4.61540 4.78529 4.89545 5.04257 5.24006 5.47425 5.55073 5.60702 5.84494 5.96425 6.08103 6.16515 6.72869 6.86036 7.19811 7.38443 8.95176 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.024333 B = 0.003936 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.425769 B = 7112.853487 C = 8185.973505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.128 3.872 3 N -0.365 5.365 4 C 0.110 3.890 5 C -0.223 4.223 6 Cl -0.028 7.028 7 C 0.290 3.710 8 N -0.632 5.632 9 C 0.506 3.494 10 O -0.539 6.539 11 C -0.113 4.113 12 C 0.042 3.958 13 C -0.542 4.542 14 H 0.079 0.921 15 C -0.007 4.007 16 N -0.939 5.939 17 Si 0.975 3.025 18 H -0.272 1.272 19 H -0.287 1.287 20 H -0.254 1.254 21 N -0.321 5.321 22 H 0.030 0.970 23 H 0.105 0.895 24 H 0.057 0.943 25 H 0.088 0.912 26 H 0.151 0.849 27 H 0.237 0.763 28 H 0.434 0.566 29 H 0.112 0.888 30 H 0.113 0.887 31 H -0.017 1.017 32 H -0.017 1.017 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.567 -10.088 21.071 26.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.009 3.991 3 N -0.148 5.148 4 C -0.039 4.039 5 C -0.264 4.264 6 Cl 0.000 7.000 7 C 0.033 3.967 8 N -0.285 5.285 9 C 0.294 3.706 10 O -0.411 6.411 11 C -0.152 4.152 12 C 0.005 3.995 13 C -0.580 4.580 14 H 0.097 0.903 15 C -0.204 4.204 16 N -0.579 5.579 17 Si 0.799 3.201 18 H -0.197 1.197 19 H -0.213 1.213 20 H -0.178 1.178 21 N -0.151 5.151 22 H 0.049 0.951 23 H 0.123 0.877 24 H 0.077 0.923 25 H 0.106 0.894 26 H 0.169 0.831 27 H 0.253 0.747 28 H 0.274 0.726 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.001 0.999 32 H 0.001 0.999 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.198 -11.373 19.838 25.038 hybrid contribution 0.333 1.381 -0.202 1.435 sum 10.531 -9.992 19.636 24.420 Atomic orbital electron populations 1.22034 0.94447 1.04010 1.01682 1.22184 0.95692 0.74759 1.06458 1.48860 1.35236 1.10889 1.19829 1.22910 0.92908 0.91870 0.96262 1.20452 1.10573 0.94367 1.01004 1.98315 1.65886 1.59086 1.76691 1.19533 0.96493 0.88015 0.92676 1.43137 1.47738 1.10236 1.27343 1.21824 0.77438 0.91768 0.79553 1.90751 1.43211 1.41683 1.65487 1.21670 1.03579 0.92175 0.97816 1.18701 0.93112 0.95805 0.91917 1.21702 1.27542 0.97496 1.11271 0.90291 1.26146 0.94928 1.00875 0.98471 1.70192 1.30083 1.32719 1.24873 0.85300 0.77294 0.78881 0.78641 1.19709 1.21265 1.17767 1.78153 1.25402 0.96816 1.14714 0.95072 0.87684 0.92344 0.89377 0.83107 0.74698 0.72584 0.86954 0.86929 0.99885 0.99890 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 10.10 71.98 0.73 -2.14 16 2 C 0.13 1.83 7.23 86.38 0.62 2.45 16 3 N -0.36 -8.51 3.68 -347.96 -1.28 -9.79 16 4 C 0.11 1.93 11.42 83.51 0.95 2.88 16 5 C -0.22 -5.24 6.67 22.13 0.15 -5.09 16 6 Cl -0.03 -0.52 29.18 -2.72 -0.08 -0.60 16 7 C 0.29 9.45 7.82 133.33 1.04 10.49 16 8 N -0.63 -20.55 5.45 -307.44 -1.68 -22.23 16 9 C 0.51 21.26 7.80 87.66 0.68 21.94 16 10 O -0.54 -28.43 14.70 -3.08 -0.05 -28.48 16 11 C -0.11 -4.64 5.64 29.85 0.17 -4.47 16 12 C 0.04 2.40 4.26 29.85 0.13 2.53 16 13 C -0.54 -31.13 9.11 25.60 0.23 -30.90 16 14 H 0.08 4.09 7.74 -2.91 -0.02 4.07 16 15 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 16 N -0.94 -60.38 13.29 21.45 0.28 -60.09 16 17 Si 0.98 44.70 29.54 68.60 2.03 46.72 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 19 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.25 -10.76 7.11 99.48 0.71 -10.05 16 21 N -0.32 -11.58 10.64 -54.39 -0.58 -12.16 16 22 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 25 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 26 H 0.15 0.56 8.07 -2.39 -0.02 0.54 16 27 H 0.24 1.39 8.06 -2.91 -0.02 1.37 16 28 H 0.43 10.62 8.69 -92.71 -0.81 9.82 16 29 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 30 H 0.11 3.99 8.14 -2.38 -0.02 3.97 16 31 H -0.02 -1.11 8.10 -2.39 -0.02 -1.13 16 32 H -0.02 -1.11 8.10 -2.39 -0.02 -1.13 16 33 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -85.98 309.22 4.14 -81.83 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: 0.32 Total: 7.05 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 5.17 Total: -2.25 kcal Atomic # 7 Polarization: -101.02 SS G_CDS: -3.25 Total: -104.27 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -0.05 Total: -28.48 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -0.08 Total: -0.60 kcal Total: -85.98 4.14 -81.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894900119.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.653 kcal (2) G-P(sol) polarization free energy of solvation -85.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds