Wall clock time and date at job start Mon Mar 30 2020 01:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.35074 * 125.97435 * 124.71597 * 3 2 1 5 5 C 1.35291 * 107.83701 * 179.83989 * 4 3 2 6 6 Cl 1.73602 * 126.07098 * 180.12130 * 5 4 3 7 7 C 1.40469 * 107.85909 * 0.42754 * 5 4 3 8 8 N 1.40179 * 125.96833 * 179.73849 * 7 5 4 9 9 C 1.34772 * 119.99766 * 180.02562 * 8 7 5 10 10 O 1.21288 * 120.00499 * 0.02562 * 9 8 7 11 11 C 1.50702 * 119.99766 * 179.97438 * 9 8 7 12 12 H 1.09003 * 109.47343 * 300.00661 * 11 9 8 13 13 C 1.53000 * 109.47006 * 60.00718 * 11 9 8 14 14 C 1.50704 * 109.47192 * 180.02562 * 11 9 8 15 15 H 1.07995 * 119.99848 * 0.02562 * 14 11 9 16 16 C 1.37877 * 119.99607 * 180.02562 * 14 11 9 17 17 N 1.31507 * 120.00305 * 0.02562 * 16 14 11 18 18 Si 1.86810 * 119.99552 * 179.97438 * 16 14 11 19 19 H 1.48495 * 109.47001 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46981 * 120.00020 * 18 16 14 21 21 H 1.48496 * 109.47208 * 240.00079 * 18 16 14 22 22 N 1.31230 * 108.06199 * 359.73205 * 7 5 4 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99854 * 1 2 3 25 25 H 1.08996 * 109.46952 * 59.99873 * 1 2 3 26 26 H 1.09001 * 109.47289 * 239.99872 * 2 1 3 27 27 H 1.09004 * 109.47261 * 120.00128 * 2 1 3 28 28 H 1.08002 * 126.08367 * 0.02562 * 4 3 2 29 29 H 0.96996 * 119.99655 * 0.02562 * 8 7 5 30 30 H 1.08998 * 109.47518 * 59.99981 * 13 11 9 31 31 H 1.09003 * 109.47196 * 180.02562 * 13 11 9 32 32 H 1.09010 * 109.46954 * 299.99573 * 13 11 9 33 33 H 0.97005 * 119.99991 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8698 1.9218 0.8985 5 6 3.0751 3.2129 0.5503 6 17 4.0931 4.3465 1.3823 7 6 2.3126 3.4753 -0.5999 8 7 2.2410 4.6997 -1.2786 9 6 1.4667 4.8180 -2.3753 10 8 0.8315 3.8651 -2.7749 11 6 1.3893 6.1345 -3.1046 12 1 1.0094 6.9018 -2.4300 13 6 2.7843 6.5299 -3.5928 14 6 0.4625 6.0009 -4.2855 15 1 -0.0222 5.0572 -4.4874 16 6 0.2336 7.0835 -5.1080 17 7 0.8243 8.2325 -4.8624 18 14 -0.9146 6.9176 -6.5722 19 1 -1.4476 5.5328 -6.6289 20 1 -2.0405 7.8754 -6.4294 21 1 -0.1690 7.2131 -7.8220 22 7 1.6792 2.3738 -0.9282 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.3109 1.4129 1.7429 29 1 2.7487 5.4618 -0.9588 30 1 3.1642 5.7626 -4.2674 31 1 2.7284 7.4823 -4.1199 32 1 3.4544 6.6267 -2.7384 33 1 0.6635 8.9940 -5.4414 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894902518.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:11 Heat of formation + Delta-G solvation = 13.382215 kcal Electronic energy + Delta-G solvation = -18446.281830 eV Core-core repulsion = 15341.038122 eV Total energy + Delta-G solvation = -3105.243708 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.42797 -40.50935 -37.43982 -36.24427 -35.80548 -34.45182 -32.51971 -31.02852 -29.76768 -27.23669 -25.61346 -24.01956 -22.64860 -21.97926 -20.43397 -18.97453 -18.25923 -17.58044 -17.07939 -16.66493 -16.39847 -15.77742 -15.71741 -15.03337 -14.77531 -14.65760 -14.41147 -13.71476 -13.50303 -13.02361 -12.99058 -12.76576 -12.67168 -12.62099 -12.42185 -12.24519 -12.17671 -12.03985 -11.71271 -11.44116 -11.06995 -10.63907 -10.37551 -9.87944 -9.14555 -8.16980 -6.27538 0.77482 0.97838 1.25501 1.39337 1.40944 1.53622 1.60807 2.16309 2.30912 2.47793 3.12791 3.48320 3.85400 4.09282 4.12544 4.37330 4.38444 4.39430 4.65695 4.71029 4.80387 4.90144 4.92590 4.98028 5.25929 5.44487 5.60344 5.72071 5.88747 6.01864 6.10533 6.27370 6.76964 6.86472 7.32012 7.43603 8.89343 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.021653 B = 0.005170 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.819846 B = 5414.377781 C = 6576.030520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.128 3.872 3 N -0.366 5.366 4 C 0.111 3.889 5 C -0.227 4.227 6 Cl -0.031 7.031 7 C 0.291 3.709 8 N -0.638 5.638 9 C 0.516 3.484 10 O -0.536 6.536 11 C 0.031 3.969 12 H 0.049 0.951 13 C -0.121 4.121 14 C -0.530 4.530 15 H 0.047 0.953 16 C 0.022 3.978 17 N -0.909 5.909 18 Si 0.957 3.043 19 H -0.282 1.282 20 H -0.273 1.273 21 H -0.272 1.272 22 N -0.319 5.319 23 H 0.106 0.894 24 H 0.056 0.944 25 H 0.030 0.970 26 H 0.088 0.912 27 H 0.151 0.849 28 H 0.238 0.762 29 H 0.427 0.573 30 H 0.023 0.977 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.998 -13.384 15.763 21.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.009 3.991 3 N -0.149 5.149 4 C -0.039 4.039 5 C -0.267 4.267 6 Cl -0.003 7.003 7 C 0.034 3.966 8 N -0.290 5.290 9 C 0.305 3.695 10 O -0.409 6.409 11 C 0.010 3.990 12 H 0.066 0.934 13 C -0.180 4.180 14 C -0.568 4.568 15 H 0.066 0.934 16 C -0.177 4.177 17 N -0.548 5.548 18 Si 0.783 3.217 19 H -0.207 1.207 20 H -0.198 1.198 21 H -0.197 1.197 22 N -0.149 5.149 23 H 0.124 0.876 24 H 0.075 0.925 25 H 0.050 0.950 26 H 0.107 0.893 27 H 0.169 0.831 28 H 0.254 0.746 29 H 0.267 0.733 30 H 0.042 0.958 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.748 -14.432 14.574 21.301 hybrid contribution 0.132 1.160 -0.257 1.195 sum 5.881 -13.272 14.318 20.389 Atomic orbital electron populations 1.22031 0.94407 1.03998 1.01673 1.22185 0.95741 0.74708 1.06447 1.48886 1.35337 1.10817 1.19861 1.22880 0.93092 0.91691 0.96195 1.20498 1.10751 0.94510 1.00973 1.98308 1.66060 1.59283 1.76651 1.19611 0.96260 0.88067 0.92674 1.43334 1.47945 1.10064 1.27676 1.22040 0.76584 0.92102 0.78772 1.90600 1.43233 1.41591 1.65444 1.18830 0.96952 0.88249 0.94968 0.93372 1.21596 0.93972 1.02471 0.99915 1.21250 1.26995 0.97380 1.11182 0.93434 1.25570 0.97355 0.94726 1.00061 1.69942 1.43625 1.01647 1.39546 0.85520 0.79029 0.77729 0.79452 1.20681 1.19817 1.19745 1.78146 1.25193 0.96670 1.14935 0.87580 0.92456 0.95023 0.89330 0.83140 0.74602 0.73330 0.95778 0.90468 0.92917 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 10.10 71.98 0.73 -2.27 16 2 C 0.13 1.99 7.23 86.38 0.62 2.62 16 3 N -0.37 -9.34 3.68 -347.96 -1.28 -10.62 16 4 C 0.11 2.24 11.42 83.51 0.95 3.19 16 5 C -0.23 -6.18 6.67 22.13 0.15 -6.03 16 6 Cl -0.03 -0.71 29.18 -2.72 -0.08 -0.79 16 7 C 0.29 10.80 7.82 133.33 1.04 11.84 16 8 N -0.64 -25.37 5.34 -307.45 -1.64 -27.01 16 9 C 0.52 25.56 7.12 87.66 0.62 26.19 16 10 O -0.54 -30.65 14.18 -3.06 -0.04 -30.70 16 11 C 0.03 1.63 2.64 -12.28 -0.03 1.59 16 12 H 0.05 2.56 8.14 -2.39 -0.02 2.54 16 13 C -0.12 -5.68 8.87 71.98 0.64 -5.04 16 14 C -0.53 -31.38 8.38 25.60 0.21 -31.16 16 15 H 0.05 3.03 6.75 -2.91 -0.02 3.01 16 16 C 0.02 1.27 5.30 84.66 0.45 1.72 16 17 N -0.91 -51.25 11.32 21.45 0.24 -51.00 16 18 Si 0.96 45.61 29.54 68.60 2.03 47.63 16 19 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 20 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 22 N -0.32 -12.47 10.64 -54.39 -0.58 -13.05 16 23 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.15 0.74 8.07 -2.38 -0.02 0.72 16 28 H 0.24 1.91 8.06 -2.91 -0.02 1.89 16 29 H 0.43 14.38 8.11 -92.71 -0.75 13.63 16 30 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.08 3.93 6.07 -2.39 -0.01 3.91 16 32 H 0.05 2.00 7.56 -2.38 -0.02 1.98 16 33 H 0.27 14.13 8.31 -92.70 -0.77 13.36 16 Total: -1.00 -77.25 302.50 4.42 -72.83 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.39 Total: 10.08 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 5.39 Total: 2.64 kcal Atomic # 7 Polarization: -98.43 SS G_CDS: -3.26 Total: -101.69 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.04 Total: -30.70 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.08 Total: -0.79 kcal Total: -77.25 4.42 -72.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894902518.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.210 kcal (2) G-P(sol) polarization free energy of solvation -77.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds