Wall clock time and date at job start Mon Mar 30 2020 00:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 120.00307 * 2 1 4 4 C 1.52997 * 109.47235 * 270.00154 * 3 2 1 5 5 C 1.52999 * 109.47001 * 179.97438 * 4 3 2 6 6 F 1.39903 * 109.46811 * 179.97438 * 5 4 3 7 7 C 1.34781 * 119.99911 * 179.97438 * 2 1 3 8 8 O 1.21752 * 119.99842 * 180.12939 * 7 2 1 9 9 C 1.46231 * 119.99685 * 0.12668 * 7 2 1 10 10 S 1.75667 * 125.23198 * 350.36747 * 9 7 2 11 11 C 1.75471 * 92.09462 * 180.02562 * 10 9 7 12 12 C 1.32771 * 111.36134 * 359.71191 * 11 10 9 13 13 C 1.39551 * 125.22998 * 170.38907 * 9 7 2 14 14 C 1.40541 * 123.71008 * 359.97438 * 13 9 7 15 15 H 1.08001 * 120.00189 * 19.95423 * 14 13 9 16 16 C 1.40309 * 120.00017 * 199.95278 * 14 13 9 17 17 N 1.30636 * 119.99761 * 8.58351 * 16 14 13 18 18 Si 1.86804 * 119.99904 * 188.58148 * 16 14 13 19 19 H 1.48502 * 109.46864 * 265.01183 * 18 16 14 20 20 H 1.48492 * 109.47150 * 25.01072 * 18 16 14 21 21 H 1.48493 * 109.46964 * 145.01140 * 18 16 14 22 22 H 1.08999 * 109.47243 * 263.58386 * 1 2 3 23 23 H 1.09000 * 109.46888 * 23.57768 * 1 2 3 24 24 H 1.08994 * 109.47260 * 143.57948 * 1 2 3 25 25 H 1.09004 * 109.47162 * 30.00051 * 3 2 1 26 26 H 1.09003 * 109.47287 * 149.99435 * 3 2 1 27 27 H 1.09004 * 109.46961 * 300.00020 * 4 3 2 28 28 H 1.09002 * 109.46966 * 59.99909 * 4 3 2 29 29 H 1.08995 * 109.47252 * 299.99938 * 5 4 3 30 30 H 1.09002 * 109.47230 * 60.00199 * 5 4 3 31 31 H 1.07997 * 124.31843 * 179.97438 * 11 10 9 32 32 H 1.07994 * 122.78380 * 180.25105 * 12 11 10 33 33 H 0.97004 * 120.00000 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 6 3.2171 3.0357 -1.4424 6 9 3.4508 3.4393 -2.7614 7 6 2.1389 -1.1673 0.0005 8 8 3.3564 -1.1672 0.0029 9 6 1.4077 -2.4336 -0.0017 10 16 -0.3246 -2.6039 0.2350 11 6 -0.2400 -4.3492 0.0742 12 6 1.0047 -4.7547 -0.1470 13 6 1.9788 -3.6926 -0.1918 14 6 3.3515 -3.9017 -0.4088 15 1 4.0650 -3.1426 -0.1240 16 6 3.7950 -5.0967 -0.9953 17 7 2.9304 -5.9407 -1.4919 18 14 5.6218 -5.4806 -1.0661 19 1 6.1679 -5.0485 -2.3777 20 1 6.3224 -4.7564 0.0246 21 1 5.8271 -6.9420 -0.9016 22 1 -0.3634 -0.1148 1.0212 23 1 -0.3633 0.9419 -0.4111 24 1 -0.3633 -0.8269 -0.6101 25 1 1.6085 2.0284 0.5139 26 1 3.1500 1.1384 0.5139 27 1 3.0416 0.9507 -1.9563 28 1 1.5001 1.8408 -1.9563 29 1 2.6277 3.7951 -0.9287 30 1 4.1695 2.9057 -0.9285 31 1 -1.0924 -5.0090 0.1421 32 1 1.2665 -5.7942 -0.2785 33 1 3.2370 -6.7667 -1.8978 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895308199.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:53 Heat of formation + Delta-G solvation = -70.240963 kcal Electronic energy + Delta-G solvation = -18494.855267 eV Core-core repulsion = 15368.109131 eV Total energy + Delta-G solvation = -3126.746137 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -47.51640 -38.71461 -36.24992 -34.85660 -33.05479 -32.52820 -29.00330 -27.00516 -26.35410 -24.58783 -22.26809 -21.43058 -19.51819 -18.61262 -17.01446 -16.25769 -16.11670 -15.71352 -15.43330 -15.25607 -14.55209 -14.17341 -14.08328 -13.65201 -13.18609 -12.47281 -12.39871 -12.19672 -12.02052 -11.89069 -11.66516 -11.40638 -11.26154 -11.04107 -11.01172 -10.85185 -10.46926 -10.30149 -10.03336 -9.60018 -9.04319 -8.43056 -7.98070 -7.48256 -7.09478 -7.03246 -4.53939 2.17727 2.95418 2.98020 3.07065 3.22413 3.62091 3.77835 3.83141 3.83633 4.37142 4.82966 4.90568 5.00714 5.21191 5.28651 5.34331 5.59377 5.75169 5.83161 6.02843 6.06411 6.13504 6.26032 6.42468 6.54159 6.80594 7.20600 7.25384 7.33579 7.54662 7.71471 8.27809 8.39505 8.59933 8.75669 9.52140 9.83223 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.015845 B = 0.006623 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.729545 B = 4226.658093 C = 5675.148698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.635 5.635 3 C 0.129 3.871 4 C -0.170 4.170 5 C 0.066 3.934 6 F -0.222 7.222 7 C 0.601 3.399 8 O -0.564 6.564 9 C -0.438 4.438 10 S -0.024 6.024 11 C -0.234 4.234 12 C -0.103 4.103 13 C 0.141 3.859 14 C -0.378 4.378 15 H 0.115 0.885 16 C 0.066 3.934 17 N -0.777 5.777 18 Si 0.926 3.074 19 H -0.265 1.265 20 H -0.254 1.254 21 H -0.273 1.273 22 H 0.051 0.949 23 H 0.063 0.937 24 H 0.092 0.908 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.132 0.868 32 H 0.148 0.852 33 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.050 7.756 1.433 8.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.370 5.370 3 C 0.005 3.995 4 C -0.209 4.209 5 C 0.010 3.990 6 F -0.204 7.204 7 C 0.401 3.599 8 O -0.447 6.447 9 C -0.557 4.557 10 S 0.232 5.768 11 C -0.367 4.367 12 C -0.135 4.135 13 C 0.129 3.871 14 C -0.409 4.409 15 H 0.132 0.868 16 C -0.155 4.155 17 N -0.401 5.401 18 Si 0.749 3.251 19 H -0.190 1.190 20 H -0.177 1.177 21 H -0.198 1.198 22 H 0.070 0.930 23 H 0.082 0.918 24 H 0.110 0.890 25 H 0.084 0.916 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.150 0.850 32 H 0.165 0.835 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.604 8.469 1.554 9.334 hybrid contribution 1.460 -1.338 -0.504 2.043 sum -2.144 7.131 1.050 7.520 Atomic orbital electron populations 1.21857 0.80770 1.02338 1.02252 1.47544 1.05994 1.05329 1.78131 1.21012 0.98074 0.85699 0.94704 1.22589 1.01440 0.96883 0.99999 1.21920 1.01428 0.96697 0.78923 1.92749 1.96189 1.92088 1.39337 1.16928 0.86198 0.81712 0.75094 1.90624 1.13466 1.86608 1.54000 1.22514 0.92678 0.95100 1.45376 1.83117 1.09515 1.01327 1.82829 1.25500 1.00423 1.00053 1.10696 1.21866 0.91455 1.01433 0.98748 1.17942 0.93301 0.88338 0.87469 1.20179 0.93242 1.00010 1.27424 0.86764 1.26442 1.01684 0.94896 0.92524 1.69658 1.37084 1.08730 1.24610 0.85978 0.80557 0.78169 0.80401 1.18983 1.17709 1.19814 0.93004 0.91845 0.89014 0.91553 0.90028 0.90023 0.91115 0.91056 0.90647 0.85031 0.83470 0.90100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.19 8.90 59.85 0.53 1.73 16 2 N -0.64 -12.22 2.87 -183.29 -0.53 -12.74 16 3 C 0.13 1.99 5.38 -4.04 -0.02 1.97 16 4 C -0.17 -2.47 5.99 -26.73 -0.16 -2.63 16 5 C 0.07 0.78 7.55 37.16 0.28 1.06 16 6 F -0.22 -3.22 17.36 2.25 0.04 -3.18 16 7 C 0.60 14.67 7.60 -13.05 -0.10 14.57 16 8 O -0.56 -15.18 14.01 5.14 0.07 -15.11 16 9 C -0.44 -11.08 6.28 -35.88 -0.23 -11.30 16 10 S -0.02 -0.50 17.99 -107.50 -1.93 -2.43 16 11 C -0.23 -5.14 11.07 28.86 0.32 -4.82 16 12 C -0.10 -2.55 9.09 -39.12 -0.36 -2.91 16 13 C 0.14 3.77 5.72 -106.21 -0.61 3.16 16 14 C -0.38 -10.22 8.68 -37.94 -0.33 -10.55 16 15 H 0.11 3.24 5.82 -52.49 -0.31 2.94 16 16 C 0.07 1.62 5.42 -17.28 -0.09 1.53 16 17 N -0.78 -18.73 10.55 55.57 0.59 -18.15 16 18 Si 0.93 18.56 29.57 -169.99 -5.03 13.53 16 19 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 20 H -0.25 -5.17 7.11 56.52 0.40 -4.77 16 21 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 22 H 0.05 0.81 7.73 -51.93 -0.40 0.41 16 23 H 0.06 0.81 8.02 -51.93 -0.42 0.40 16 24 H 0.09 1.66 4.64 -23.32 -0.11 1.55 16 25 H 0.07 0.79 8.07 -51.93 -0.42 0.38 16 26 H 0.08 1.35 7.42 -51.93 -0.39 0.97 16 27 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.13 2.48 8.06 -52.49 -0.42 2.06 16 32 H 0.15 3.63 6.08 -52.49 -0.32 3.31 16 33 H 0.29 6.20 8.29 -40.82 -0.34 5.86 16 LS Contribution 292.07 15.07 4.40 4.40 Total: -1.00 -29.47 292.07 -6.75 -36.22 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -3.60 Total: 5.66 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -0.76 Total: -8.20 kcal Atomic # 7 Polarization: -30.95 SS G_CDS: 0.06 Total: -30.89 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: 0.07 Total: -15.11 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.04 Total: -3.18 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Atomic # 16 Polarization: -0.50 SS G_CDS: -1.93 Total: -2.43 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.47 -6.75 -36.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895308199.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.023 kcal (2) G-P(sol) polarization free energy of solvation -29.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds