Wall clock time and date at job start Mon Mar 30 2020 00:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 120.00307 * 2 1 4 4 C 1.52997 * 109.47235 * 270.00154 * 3 2 1 5 5 C 1.52999 * 109.47001 * 179.97438 * 4 3 2 6 6 F 1.39903 * 109.46811 * 179.97438 * 5 4 3 7 7 C 1.34781 * 119.99911 * 179.97438 * 2 1 3 8 8 O 1.21752 * 119.99842 * 180.12939 * 7 2 1 9 9 C 1.46231 * 119.99685 * 0.12668 * 7 2 1 10 10 S 1.75667 * 125.23198 * 350.36747 * 9 7 2 11 11 C 1.75471 * 92.09462 * 180.02562 * 10 9 7 12 12 C 1.32771 * 111.36134 * 359.71191 * 11 10 9 13 13 C 1.39551 * 125.22998 * 170.38907 * 9 7 2 14 14 C 1.40541 * 123.71008 * 359.97438 * 13 9 7 15 15 H 1.08001 * 120.00189 * 19.95423 * 14 13 9 16 16 C 1.40309 * 120.00017 * 199.95278 * 14 13 9 17 17 N 1.30636 * 119.99761 * 8.58351 * 16 14 13 18 18 Si 1.86804 * 119.99904 * 188.58148 * 16 14 13 19 19 H 1.48502 * 109.46864 * 265.01183 * 18 16 14 20 20 H 1.48492 * 109.47150 * 25.01072 * 18 16 14 21 21 H 1.48493 * 109.46964 * 145.01140 * 18 16 14 22 22 H 1.08999 * 109.47243 * 263.58386 * 1 2 3 23 23 H 1.09000 * 109.46888 * 23.57768 * 1 2 3 24 24 H 1.08994 * 109.47260 * 143.57948 * 1 2 3 25 25 H 1.09004 * 109.47162 * 30.00051 * 3 2 1 26 26 H 1.09003 * 109.47287 * 149.99435 * 3 2 1 27 27 H 1.09004 * 109.46961 * 300.00020 * 4 3 2 28 28 H 1.09002 * 109.46966 * 59.99909 * 4 3 2 29 29 H 1.08995 * 109.47252 * 299.99938 * 5 4 3 30 30 H 1.09002 * 109.47230 * 60.00199 * 5 4 3 31 31 H 1.07997 * 124.31843 * 179.97438 * 11 10 9 32 32 H 1.07994 * 122.78380 * 180.25105 * 12 11 10 33 33 H 0.97004 * 120.00000 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 6 3.2171 3.0357 -1.4424 6 9 3.4508 3.4393 -2.7614 7 6 2.1389 -1.1673 0.0005 8 8 3.3564 -1.1672 0.0029 9 6 1.4077 -2.4336 -0.0017 10 16 -0.3246 -2.6039 0.2350 11 6 -0.2400 -4.3492 0.0742 12 6 1.0047 -4.7547 -0.1470 13 6 1.9788 -3.6926 -0.1918 14 6 3.3515 -3.9017 -0.4088 15 1 4.0650 -3.1426 -0.1240 16 6 3.7950 -5.0967 -0.9953 17 7 2.9304 -5.9407 -1.4919 18 14 5.6218 -5.4806 -1.0661 19 1 6.1679 -5.0485 -2.3777 20 1 6.3224 -4.7564 0.0246 21 1 5.8271 -6.9420 -0.9016 22 1 -0.3634 -0.1148 1.0212 23 1 -0.3633 0.9419 -0.4111 24 1 -0.3633 -0.8269 -0.6101 25 1 1.6085 2.0284 0.5139 26 1 3.1500 1.1384 0.5139 27 1 3.0416 0.9507 -1.9563 28 1 1.5001 1.8408 -1.9563 29 1 2.6277 3.7951 -0.9287 30 1 4.1695 2.9057 -0.9285 31 1 -1.0924 -5.0090 0.1421 32 1 1.2665 -5.7942 -0.2785 33 1 3.2370 -6.7667 -1.8978 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895308199.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:53 Heat of formation + Delta-G solvation = -87.905216 kcal Electronic energy + Delta-G solvation = -18495.621247 eV Core-core repulsion = 15368.109131 eV Total energy + Delta-G solvation = -3127.512116 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.57810 -40.42283 -38.02184 -36.53452 -34.89300 -33.83878 -30.80000 -28.54071 -27.92085 -26.06877 -23.84293 -22.83756 -21.18715 -20.44493 -18.65712 -17.99975 -17.31357 -17.12874 -16.88258 -16.61894 -16.16840 -15.67230 -15.49727 -15.22497 -14.49626 -14.16540 -13.97460 -13.88894 -13.73283 -13.49229 -13.18421 -13.04742 -12.84328 -12.64202 -12.32277 -12.08708 -12.01356 -11.84073 -11.54602 -11.35497 -10.77260 -10.31979 -9.59904 -9.29908 -8.87239 -8.81466 -6.43620 0.33624 1.31153 1.33139 1.46256 1.50071 1.79204 2.00166 2.15195 2.32028 2.53872 3.33259 3.75711 3.80539 3.98781 4.19388 4.24823 4.37099 4.41141 4.56633 4.64858 4.70332 4.87326 4.94046 4.98433 5.06205 5.22261 5.35478 5.44225 5.62935 5.81636 5.93355 6.38582 6.56025 6.69915 6.89250 7.70498 8.05853 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.015845 B = 0.006623 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.729545 B = 4226.658093 C = 5675.148698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.632 5.632 3 C 0.126 3.874 4 C -0.162 4.162 5 C 0.068 3.932 6 F -0.238 7.238 7 C 0.588 3.412 8 O -0.604 6.604 9 C -0.476 4.476 10 S 0.056 5.944 11 C -0.228 4.228 12 C -0.137 4.137 13 C 0.110 3.890 14 C -0.422 4.422 15 H 0.087 0.913 16 C 0.034 3.966 17 N -0.794 5.794 18 Si 0.989 3.011 19 H -0.262 1.262 20 H -0.266 1.266 21 H -0.247 1.247 22 H 0.063 0.937 23 H 0.109 0.891 24 H 0.074 0.926 25 H 0.117 0.883 26 H 0.063 0.937 27 H 0.035 0.965 28 H 0.080 0.920 29 H 0.113 0.887 30 H 0.081 0.919 31 H 0.167 0.833 32 H 0.140 0.860 33 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.718 9.141 1.769 10.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.365 5.365 3 C 0.003 3.997 4 C -0.202 4.202 5 C 0.013 3.987 6 F -0.219 7.219 7 C 0.387 3.613 8 O -0.490 6.490 9 C -0.594 4.594 10 S 0.314 5.686 11 C -0.361 4.361 12 C -0.169 4.169 13 C 0.098 3.902 14 C -0.453 4.453 15 H 0.105 0.895 16 C -0.186 4.186 17 N -0.418 5.418 18 Si 0.809 3.191 19 H -0.187 1.187 20 H -0.190 1.190 21 H -0.171 1.171 22 H 0.082 0.918 23 H 0.127 0.873 24 H 0.092 0.908 25 H 0.135 0.865 26 H 0.081 0.919 27 H 0.054 0.946 28 H 0.099 0.901 29 H 0.131 0.869 30 H 0.100 0.900 31 H 0.184 0.816 32 H 0.157 0.843 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.334 9.887 1.889 11.392 hybrid contribution 1.814 -1.618 -0.581 2.500 sum -3.520 8.269 1.308 9.082 Atomic orbital electron populations 1.22039 0.78655 1.03969 1.02923 1.47572 1.07473 1.05100 1.76336 1.21285 0.97920 0.84998 0.95505 1.22475 1.01563 0.97185 0.98956 1.22047 1.02177 0.96147 0.78343 1.92721 1.96315 1.92094 1.40759 1.17153 0.85933 0.83216 0.75040 1.90587 1.15262 1.87541 1.55649 1.23104 0.96061 0.95396 1.44875 1.82653 1.05158 0.99497 1.81316 1.26060 1.00479 1.02005 1.07577 1.21731 0.92250 1.00770 1.02182 1.18399 0.94023 0.89837 0.87911 1.20142 0.93470 1.01192 1.30483 0.89543 1.27102 1.05764 0.94048 0.91673 1.69645 1.38626 1.09158 1.24397 0.85081 0.75195 0.79071 0.79783 1.18692 1.19020 1.17073 0.91834 0.87251 0.90848 0.86535 0.91858 0.94604 0.90099 0.86850 0.90022 0.81585 0.84278 0.88856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.01 8.90 127.77 1.14 3.14 16 2 N -0.63 -23.54 2.87 -851.98 -2.45 -25.99 16 3 C 0.13 3.62 5.38 86.38 0.46 4.08 16 4 C -0.16 -4.52 5.99 30.59 0.18 -4.34 16 5 C 0.07 1.45 7.55 71.98 0.54 1.99 16 6 F -0.24 -6.52 17.36 44.97 0.78 -5.74 16 7 C 0.59 29.44 7.60 86.32 0.66 30.10 16 8 O -0.60 -34.39 14.01 -4.51 -0.06 -34.45 16 9 C -0.48 -24.54 6.28 24.66 0.15 -24.39 16 10 S 0.06 2.28 17.99 -56.49 -1.02 1.26 16 11 C -0.23 -9.75 11.07 66.64 0.74 -9.01 16 12 C -0.14 -6.91 9.09 22.60 0.21 -6.70 16 13 C 0.11 6.12 5.72 -20.89 -0.12 6.01 16 14 C -0.42 -24.24 8.68 23.34 0.20 -24.04 16 15 H 0.09 5.31 5.82 -2.91 -0.02 5.30 16 16 C 0.03 1.72 5.42 85.37 0.46 2.18 16 17 N -0.79 -39.30 10.55 21.89 0.23 -39.07 16 18 Si 0.99 39.24 29.57 68.60 2.03 41.27 16 19 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 20 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 21 H -0.25 -8.70 7.11 99.48 0.71 -7.99 16 22 H 0.06 1.74 7.73 -2.39 -0.02 1.72 16 23 H 0.11 2.24 8.02 -2.39 -0.02 2.22 16 24 H 0.07 2.47 4.64 -20.59 -0.10 2.37 16 25 H 0.12 2.23 8.07 -2.38 -0.02 2.21 16 26 H 0.06 2.08 7.42 -2.39 -0.02 2.06 16 27 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 28 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.17 5.79 8.06 -2.91 -0.02 5.77 16 32 H 0.14 7.08 6.08 -2.91 -0.02 7.06 16 33 H 0.30 13.03 8.29 -92.70 -0.77 12.26 16 Total: -1.00 -69.13 292.07 5.19 -63.94 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 1.05 Total: 19.75 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: 4.63 Total: -20.97 kcal Atomic # 7 Polarization: -62.84 SS G_CDS: -2.22 Total: -65.06 kcal Atomic # 8 Polarization: -34.39 SS G_CDS: -0.06 Total: -34.45 kcal Atomic # 9 Polarization: -6.52 SS G_CDS: 0.78 Total: -5.74 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.27 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -1.02 Total: 1.26 kcal Total: -69.13 5.19 -63.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895308199.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.961 kcal (2) G-P(sol) polarization free energy of solvation -69.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds