Wall clock time and date at job start Mon Mar 30 2020 00:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00372 * 2 1 4 4 H 1.48501 * 109.46910 * 239.99962 * 3 2 1 5 5 H 1.48498 * 109.47104 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46832 * 120.00073 * 3 2 1 7 7 C 1.37875 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00205 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99752 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47029 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47157 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47157 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.47029 * 180.02562 * 12 11 10 14 14 O 1.21295 * 119.99992 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99800 * 180.02562 * 13 12 11 16 16 C 1.40787 * 120.00101 * 179.97438 * 15 13 12 17 17 C 1.35740 * 126.08314 * 0.02562 * 16 15 13 18 18 N 1.35817 * 107.57768 * 180.24147 * 17 16 15 19 19 H 0.97006 * 126.04163 * 179.72059 * 18 17 16 20 20 N 1.40068 * 107.91754 * 359.61514 * 18 17 16 21 21 C 1.30880 * 108.36266 * 0.39046 * 20 18 17 22 22 Cl 1.73603 * 125.84675 * 179.74325 * 21 20 18 23 23 H 0.97006 * 119.99650 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47404 * 59.99841 * 9 7 2 25 25 H 1.09002 * 109.47285 * 299.99299 * 9 7 2 26 26 H 1.09008 * 109.46858 * 60.00052 * 10 9 7 27 27 H 1.08997 * 109.47298 * 300.00164 * 10 9 7 28 28 H 1.09008 * 109.46744 * 60.00533 * 11 10 9 29 29 H 1.08997 * 109.47601 * 300.00530 * 11 10 9 30 30 H 1.09000 * 109.47013 * 60.00328 * 12 11 10 31 31 H 1.09006 * 109.47149 * 300.00432 * 12 11 10 32 32 H 0.97007 * 120.00060 * 0.02562 * 15 13 12 33 33 H 1.08002 * 126.20709 * 359.97075 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2508 -2.4991 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 6 2.4742 -6.1501 0.0005 13 6 1.7205 -7.4552 0.0005 14 8 0.5076 -7.4551 0.0015 15 7 2.3943 -8.6224 0.0005 16 6 1.6904 -9.8416 0.0011 17 6 0.3406 -9.9854 0.0011 18 7 0.0699 -11.3164 0.0072 19 1 -0.8125 -11.7193 0.0125 20 7 1.2900 -12.0043 0.0020 21 6 2.2593 -11.1247 0.0016 22 17 3.9578 -11.4836 0.0022 23 1 -0.4850 0.8401 -0.0004 24 1 0.6245 -2.5571 -0.8896 25 1 0.6239 -2.5567 0.8904 26 1 2.8717 -3.6044 0.8906 27 1 2.8717 -3.6045 -0.8894 28 1 0.8531 -5.0450 -0.8887 29 1 0.8535 -5.0446 0.8913 30 1 3.1014 -6.0923 0.8901 31 1 3.1002 -6.0924 -0.8899 32 1 3.3644 -8.6225 0.0009 33 1 -0.3861 -9.1865 0.0012 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897644904.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:05 Heat of formation + Delta-G solvation = 11.212105 kcal Electronic energy + Delta-G solvation = -17387.382441 eV Core-core repulsion = 14282.044630 eV Total energy + Delta-G solvation = -3105.337811 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.76069 -39.65610 -37.17623 -35.18749 -34.75354 -32.67112 -31.52507 -30.32829 -28.82983 -25.68230 -23.42368 -22.41025 -21.22471 -20.06121 -19.99910 -19.05004 -16.61711 -16.16720 -16.02323 -15.97713 -15.60127 -15.27507 -14.48011 -14.07727 -14.04320 -13.59986 -12.65235 -12.45446 -12.36693 -12.08951 -11.73955 -11.64174 -11.16163 -11.12908 -10.98532 -10.56262 -10.54847 -10.43954 -9.96793 -9.80799 -9.62921 -9.25488 -9.01369 -8.31149 -8.16727 -5.96205 -3.98754 1.13565 1.32801 1.90905 2.50959 2.80878 3.14125 3.34896 3.39398 3.41565 4.22712 4.48261 4.72476 5.02256 5.12898 5.29374 5.29730 5.39295 5.41930 5.79001 6.09421 6.24508 6.29741 6.51062 6.76697 6.80424 6.93814 6.98537 7.17626 7.25867 7.72567 7.88403 8.01867 8.05130 8.46749 9.08791 9.65010 11.15094 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.045791 B = 0.002709 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.326662 B =10332.814911 C =10913.088706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.111 4.111 11 C -0.103 4.103 12 C -0.135 4.135 13 C 0.515 3.485 14 O -0.526 6.526 15 N -0.647 5.647 16 C 0.011 3.989 17 C 0.058 3.942 18 N -0.459 5.459 19 H 0.451 0.549 20 N -0.266 5.266 21 C 0.106 3.894 22 Cl 0.010 6.990 23 H 0.261 0.739 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.414 0.586 33 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.957 -23.706 0.016 24.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.149 4.149 11 C -0.141 4.141 12 C -0.175 4.175 13 C 0.304 3.696 14 O -0.402 6.402 15 N -0.293 5.293 16 C -0.094 4.094 17 C -0.090 4.090 18 N -0.174 5.174 19 H 0.298 0.702 20 N -0.093 5.093 21 C -0.088 4.088 22 Cl 0.038 6.962 23 H 0.070 0.930 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.249 0.751 33 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 3.837 -24.745 0.016 25.041 hybrid contribution 0.933 1.459 -0.003 1.731 sum 4.769 -23.287 0.013 23.770 Atomic orbital electron populations 1.69962 1.06056 1.26639 1.50848 1.25035 0.94838 0.99222 0.95428 0.86674 0.79587 0.83249 0.78566 1.20279 1.21324 1.20271 1.21251 0.92966 0.91219 1.50553 0.92787 1.19088 0.94038 0.91243 0.97296 1.21657 0.99119 0.93903 1.00192 1.21474 0.96979 0.92601 1.03089 1.21797 1.00183 0.90975 1.04535 1.21286 0.88434 0.85121 0.74755 1.90541 1.14325 1.86853 1.48448 1.43167 1.10193 1.02548 1.73421 1.17447 0.90899 0.85368 1.15677 1.23289 0.96566 0.87021 1.02122 1.46059 1.07170 1.04463 1.59736 0.70218 1.77226 0.89138 1.19104 1.23856 1.22385 0.88423 0.90699 1.07304 1.98400 1.05437 1.95319 1.97092 0.92980 0.96602 0.96592 0.93387 0.93379 0.91654 0.91644 0.88612 0.88617 0.75052 0.77047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.23 13.29 55.43 0.74 -26.50 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.81 9.11 -34.44 -0.31 -15.13 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.19 5.15 -26.73 -0.14 -2.32 16 11 C -0.10 -1.71 4.50 -26.73 -0.12 -1.83 16 12 C -0.14 -1.59 5.70 -27.88 -0.16 -1.75 16 13 C 0.51 6.39 7.80 -10.98 -0.09 6.31 16 14 O -0.53 -8.04 13.14 5.54 0.07 -7.97 16 15 N -0.65 -6.57 5.47 -10.01 -0.05 -6.62 16 16 C 0.01 0.13 6.94 -83.84 -0.58 -0.46 16 17 C 0.06 0.61 10.87 -16.68 -0.18 0.43 16 18 N -0.46 -4.00 7.39 30.69 0.23 -3.78 16 19 H 0.45 2.27 8.96 -182.62 -1.64 0.63 16 20 N -0.27 -2.92 12.69 33.02 0.42 -2.50 16 21 C 0.11 1.14 7.85 -17.16 -0.13 1.00 16 22 Cl 0.01 0.09 29.20 -51.86 -1.51 -1.43 16 23 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.91 8.14 -51.92 -0.42 0.48 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.06 1.15 8.10 -51.92 -0.42 0.73 16 29 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 30 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.41 3.12 8.70 -40.82 -0.36 2.76 16 33 H 0.21 2.28 5.85 -52.49 -0.31 1.97 16 LS Contribution 305.02 15.07 4.60 4.60 Total: -1.00 -33.52 305.02 -7.71 -41.23 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -5.22 Total: -1.85 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -1.95 Total: -11.85 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 1.33 Total: -39.40 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.07 Total: -7.97 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 17 Polarization: 0.09 SS G_CDS: -1.51 Total: -1.43 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.52 -7.71 -41.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897644904.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.437 kcal (2) G-P(sol) polarization free energy of solvation -33.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds