Wall clock time and date at job start Mon Mar 30 2020 00:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00372 * 2 1 4 4 H 1.48501 * 109.46910 * 239.99962 * 3 2 1 5 5 H 1.48498 * 109.47104 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46832 * 120.00073 * 3 2 1 7 7 C 1.37875 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00205 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99752 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47029 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47157 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47157 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.47029 * 180.02562 * 12 11 10 14 14 O 1.21295 * 119.99992 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99800 * 180.02562 * 13 12 11 16 16 C 1.40787 * 120.00101 * 179.97438 * 15 13 12 17 17 C 1.35740 * 126.08314 * 0.02562 * 16 15 13 18 18 N 1.35817 * 107.57768 * 180.24147 * 17 16 15 19 19 H 0.97006 * 126.04163 * 179.72059 * 18 17 16 20 20 N 1.40068 * 107.91754 * 359.61514 * 18 17 16 21 21 C 1.30880 * 108.36266 * 0.39046 * 20 18 17 22 22 Cl 1.73603 * 125.84675 * 179.74325 * 21 20 18 23 23 H 0.97006 * 119.99650 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47404 * 59.99841 * 9 7 2 25 25 H 1.09002 * 109.47285 * 299.99299 * 9 7 2 26 26 H 1.09008 * 109.46858 * 60.00052 * 10 9 7 27 27 H 1.08997 * 109.47298 * 300.00164 * 10 9 7 28 28 H 1.09008 * 109.46744 * 60.00533 * 11 10 9 29 29 H 1.08997 * 109.47601 * 300.00530 * 11 10 9 30 30 H 1.09000 * 109.47013 * 60.00328 * 12 11 10 31 31 H 1.09006 * 109.47149 * 300.00432 * 12 11 10 32 32 H 0.97007 * 120.00060 * 0.02562 * 15 13 12 33 33 H 1.08002 * 126.20709 * 359.97075 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2508 -2.4991 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 6 2.4742 -6.1501 0.0005 13 6 1.7205 -7.4552 0.0005 14 8 0.5076 -7.4551 0.0015 15 7 2.3943 -8.6224 0.0005 16 6 1.6904 -9.8416 0.0011 17 6 0.3406 -9.9854 0.0011 18 7 0.0699 -11.3164 0.0072 19 1 -0.8125 -11.7193 0.0125 20 7 1.2900 -12.0043 0.0020 21 6 2.2593 -11.1247 0.0016 22 17 3.9578 -11.4836 0.0022 23 1 -0.4850 0.8401 -0.0004 24 1 0.6245 -2.5571 -0.8896 25 1 0.6239 -2.5567 0.8904 26 1 2.8717 -3.6044 0.8906 27 1 2.8717 -3.6045 -0.8894 28 1 0.8531 -5.0450 -0.8887 29 1 0.8535 -5.0446 0.8913 30 1 3.1014 -6.0923 0.8901 31 1 3.1002 -6.0924 -0.8899 32 1 3.3644 -8.6225 0.0009 33 1 -0.3861 -9.1865 0.0012 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897644904.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:04 Heat of formation + Delta-G solvation = -11.988321 kcal Electronic energy + Delta-G solvation = -17388.388487 eV Core-core repulsion = 14282.044630 eV Total energy + Delta-G solvation = -3106.343857 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.56829 -40.61779 -37.90202 -36.67627 -35.80232 -34.59120 -32.31238 -31.77169 -29.98242 -27.36224 -24.67755 -23.64587 -22.26814 -21.56998 -20.99365 -19.87528 -18.38696 -17.52260 -17.01343 -16.87375 -16.45333 -16.36559 -16.23817 -15.37175 -15.10582 -14.51972 -14.44263 -13.79250 -13.57623 -13.25847 -13.15829 -12.82481 -12.78267 -12.36278 -12.12019 -12.10766 -12.03471 -11.90746 -11.30784 -11.30656 -11.13475 -10.80870 -10.57907 -10.51425 -8.99619 -8.16332 -6.27938 0.39851 0.53079 1.03156 1.42240 1.45751 1.53507 1.72587 1.91546 2.34872 2.44243 3.16612 3.43219 3.80293 4.07200 4.21835 4.24316 4.36088 4.59763 4.73879 4.74782 4.90724 4.93830 5.25573 5.37914 5.41720 5.48861 5.61889 5.83768 5.92537 6.02053 6.25534 6.29077 6.46477 6.90953 7.12732 7.41620 8.95573 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.045791 B = 0.002709 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.326662 B =10332.814911 C =10913.088706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.006 4.006 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.065 0.935 9 C 0.019 3.981 10 C -0.098 4.098 11 C -0.096 4.096 12 C -0.124 4.124 13 C 0.515 3.485 14 O -0.562 6.562 15 N -0.632 5.632 16 C -0.006 4.006 17 C 0.058 3.942 18 N -0.444 5.444 19 H 0.465 0.535 20 N -0.283 5.283 21 C 0.101 3.899 22 Cl 0.025 6.975 23 H 0.262 0.738 24 H -0.015 1.015 25 H -0.014 1.014 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.427 0.573 33 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.138 -24.134 0.017 25.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.018 4.018 10 C -0.135 4.135 11 C -0.134 4.134 12 C -0.164 4.164 13 C 0.305 3.695 14 O -0.440 6.440 15 N -0.279 5.279 16 C -0.112 4.112 17 C -0.092 4.092 18 N -0.161 5.161 19 H 0.315 0.685 20 N -0.111 5.111 21 C -0.092 4.092 22 Cl 0.052 6.948 23 H 0.071 0.929 24 H 0.004 0.996 25 H 0.004 0.996 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.266 0.734 33 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 6.050 -25.220 0.017 25.936 hybrid contribution 0.207 1.536 -0.003 1.549 sum 6.257 -23.685 0.014 24.497 Atomic orbital electron populations 1.70119 1.08002 1.27748 1.51946 1.26056 0.95753 1.03608 0.94871 0.85482 0.78215 0.77924 0.79314 1.18976 1.21166 1.18963 1.21761 0.93764 0.92363 1.50158 0.91634 1.19052 0.94705 0.93674 0.94381 1.21458 0.97849 0.92854 1.01353 1.21254 0.97442 0.93201 1.01484 1.21664 0.99029 0.88462 1.07219 1.21318 0.87971 0.85801 0.74422 1.90544 1.15834 1.87350 1.50310 1.42945 1.10809 1.01736 1.72367 1.17611 0.91263 0.85710 1.16596 1.23287 0.96590 0.87511 1.01774 1.46092 1.07505 1.03861 1.58607 0.68491 1.77185 0.89791 1.19682 1.24397 1.22499 0.89218 0.90451 1.07081 1.98402 1.04111 1.95242 1.97005 0.92894 0.99618 0.99607 0.92093 0.92086 0.93389 0.93377 0.85891 0.85899 0.73437 0.77442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.27 13.29 21.45 0.28 -57.99 16 2 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 3 Si 0.97 44.24 29.54 68.60 2.03 46.26 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.54 -30.90 9.11 25.60 0.23 -30.67 16 8 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 9 C 0.02 1.01 4.97 29.85 0.15 1.16 16 10 C -0.10 -3.76 5.15 30.59 0.16 -3.60 16 11 C -0.10 -3.12 4.50 30.59 0.14 -2.98 16 12 C -0.12 -2.62 5.70 29.85 0.17 -2.45 16 13 C 0.52 12.03 7.80 87.66 0.68 12.71 16 14 O -0.56 -17.08 13.14 -3.08 -0.04 -17.12 16 15 N -0.63 -11.61 5.47 -303.96 -1.66 -13.27 16 16 C -0.01 -0.13 6.94 37.64 0.26 0.13 16 17 C 0.06 1.16 10.87 83.50 0.91 2.07 16 18 N -0.44 -7.27 7.39 -56.82 -0.42 -7.69 16 19 H 0.47 4.20 8.96 -213.33 -1.91 2.29 16 20 N -0.28 -5.85 12.69 -49.44 -0.63 -6.48 16 21 C 0.10 2.03 7.85 85.35 0.67 2.70 16 22 Cl 0.02 0.39 29.20 -2.72 -0.08 0.31 16 23 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 24 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 25 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 26 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 27 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.05 1.71 8.10 -2.38 -0.02 1.69 16 29 H 0.05 1.71 8.10 -2.39 -0.02 1.69 16 30 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.12 1.99 8.14 -2.38 -0.02 1.97 16 32 H 0.43 5.30 8.70 -92.70 -0.81 4.49 16 33 H 0.21 4.46 5.85 -2.91 -0.02 4.45 16 Total: -1.00 -73.22 305.02 1.75 -71.47 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -1.56 Total: 5.32 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: 3.83 Total: -20.81 kcal Atomic # 7 Polarization: -83.01 SS G_CDS: -2.43 Total: -85.43 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.04 Total: -17.12 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 17 Polarization: 0.39 SS G_CDS: -0.08 Total: 0.31 kcal Total: -73.22 1.75 -71.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897644904.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.486 kcal (2) G-P(sol) polarization free energy of solvation -73.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds