Wall clock time and date at job start Mon Mar 30 2020 01:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00255 * 2 1 4 4 H 1.48503 * 109.47416 * 269.99835 * 3 2 1 5 5 H 1.48507 * 109.47343 * 29.99745 * 3 2 1 6 6 H 1.48499 * 109.47569 * 149.99417 * 3 2 1 7 7 C 1.37884 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00027 * 175.08269 * 7 2 1 9 9 C 1.50700 * 119.99493 * 355.36229 * 7 2 1 10 10 C 1.53002 * 115.54672 * 279.20521 * 9 7 2 11 11 S 1.81398 * 109.47466 * 294.73931 * 10 9 7 12 12 C 1.81399 * 102.99832 * 180.02562 * 11 10 9 13 13 C 1.53011 * 109.46887 * 179.97438 * 12 11 10 14 14 N 1.46495 * 109.46880 * 180.02562 * 13 12 11 15 15 C 1.47098 * 125.55810 * 90.00496 * 14 13 12 16 16 C 1.54089 * 103.77401 * 179.97438 * 15 14 13 17 17 O 1.45703 * 104.01180 * 359.97438 * 16 15 14 18 18 C 1.33770 * 109.47359 * 359.75582 * 17 16 15 19 19 O 1.21515 * 123.07189 * 180.23895 * 18 17 16 20 20 C 1.53001 * 117.49832 * 133.50573 * 9 7 2 21 21 C 1.53003 * 117.50133 * 64.88144 * 9 7 2 22 22 H 0.97000 * 119.99877 * 5.01063 * 1 2 3 23 23 H 1.08999 * 109.47450 * 54.74449 * 10 9 7 24 24 H 1.09006 * 109.46501 * 174.74066 * 10 9 7 25 25 H 1.08992 * 109.47589 * 300.00054 * 12 11 10 26 26 H 1.09002 * 109.47101 * 60.00282 * 12 11 10 27 27 H 1.09002 * 109.46988 * 300.00542 * 13 12 11 28 28 H 1.09002 * 109.46909 * 60.00300 * 13 12 11 29 29 H 1.08995 * 110.56551 * 298.54344 * 15 14 13 30 30 H 1.08995 * 110.56609 * 61.40282 * 15 14 13 31 31 H 1.09000 * 110.52332 * 118.63077 * 16 15 14 32 32 H 1.09001 * 110.52425 * 241.22639 * 16 15 14 33 33 H 1.08998 * 117.49625 * 359.97438 * 20 9 7 34 34 H 1.08998 * 117.49958 * 145.01931 * 20 9 7 35 35 H 1.09002 * 117.49568 * 214.97797 * 21 9 7 36 36 H 1.08998 * 117.49593 * 359.97438 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0816 -1.1958 -0.0796 9 6 1.2546 -2.4970 0.1066 10 6 0.8308 -2.9011 1.5202 11 16 2.3062 -3.2232 2.5251 12 6 1.6104 -3.6806 4.1366 13 6 2.7467 -3.9888 5.1139 14 7 2.1847 -4.3588 6.4152 15 6 1.8343 -5.7231 6.8389 16 6 1.2967 -5.5359 8.2708 17 8 1.4000 -4.1009 8.5015 18 6 1.9124 -3.5104 7.4161 19 8 2.1090 -2.3135 7.3428 20 6 1.6420 -3.6159 -0.8623 21 6 0.3190 -2.8694 -1.0452 22 1 -0.4850 0.8368 -0.0734 23 1 0.2532 -2.0941 1.9710 24 1 0.2198 -3.8025 1.4724 25 1 1.0131 -2.8545 4.5222 26 1 0.9801 -4.5627 4.0231 27 1 3.3437 -4.8151 4.7280 28 1 3.3773 -3.1070 5.2275 29 1 1.0623 -6.1388 6.1914 30 1 2.7176 -6.3618 6.8421 31 1 0.2578 -5.8596 8.3343 32 1 1.9111 -6.0846 8.9845 33 1 2.4389 -3.4096 -1.5767 34 1 1.5949 -4.6403 -0.4928 35 1 -0.5984 -3.4027 -0.7960 36 1 0.2455 -2.1719 -1.8795 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902471631.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:28 Heat of formation + Delta-G solvation = -45.580576 kcal Electronic energy + Delta-G solvation = -18280.055724 eV Core-core repulsion = 15277.839247 eV Total energy + Delta-G solvation = -3002.216477 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.66390 -37.29380 -36.57683 -36.07945 -31.92428 -31.70181 -29.34923 -27.70748 -25.35676 -24.34403 -23.71217 -21.11486 -20.96655 -19.18373 -17.67744 -17.35133 -16.97708 -16.23941 -15.42431 -15.13002 -14.60737 -14.35064 -14.25465 -14.13014 -13.86655 -13.75660 -13.20946 -12.71434 -12.48457 -12.37659 -12.02529 -11.44944 -11.22311 -10.94519 -10.90435 -10.86490 -10.66778 -10.45639 -10.17600 -9.61629 -9.36937 -9.13304 -8.91319 -8.43675 -8.01384 -6.86764 -6.01322 -4.07633 1.92446 2.59406 2.67281 3.30203 3.33560 3.41462 3.42449 3.47181 3.85321 4.31744 4.44159 4.44727 4.87223 4.93920 4.96285 5.16650 5.26109 5.27534 5.37426 5.42578 5.86015 5.91963 5.93885 6.17794 6.23322 6.37706 6.51122 6.71808 6.80202 7.06468 7.18320 7.37398 7.50251 7.91111 7.91174 8.40341 8.93359 9.58573 11.06789 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.023478 B = 0.004346 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.317268 B = 6440.843205 C = 7178.148896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.072 3.928 3 Si 0.890 3.110 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.486 4.486 8 H 0.062 0.938 9 C 0.054 3.946 10 C -0.023 4.023 11 S -0.232 6.232 12 C -0.125 4.125 13 C 0.168 3.832 14 N -0.628 5.628 15 C 0.064 3.936 16 C 0.041 3.959 17 O -0.331 6.331 18 C 0.640 3.360 19 O -0.514 6.514 20 C -0.204 4.204 21 C -0.147 4.147 22 H 0.260 0.740 23 H 0.082 0.918 24 H 0.048 0.952 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.631 -14.994 12.365 19.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.131 4.131 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.523 4.523 8 H 0.080 0.920 9 C 0.052 3.948 10 C -0.171 4.171 11 S -0.005 6.005 12 C -0.275 4.275 13 C 0.046 3.954 14 N -0.377 5.377 15 C -0.060 4.060 16 C -0.034 4.034 17 O -0.241 6.241 18 C 0.393 3.607 19 O -0.397 6.397 20 C -0.242 4.242 21 C -0.187 4.187 22 H 0.070 0.930 23 H 0.101 0.899 24 H 0.066 0.934 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.111 0.889 28 H 0.117 0.883 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.577 -14.055 12.363 18.895 hybrid contribution -1.153 0.610 0.206 1.321 sum 1.424 -13.445 12.568 18.460 Atomic orbital electron populations 1.69977 1.05920 1.26772 1.49334 1.24953 0.94800 0.98963 0.94371 0.86616 0.80293 0.83384 0.78001 1.20784 1.21206 1.19459 1.20365 0.92785 0.88304 1.50878 0.91973 1.18444 0.98639 0.93325 0.84375 1.23086 0.93838 1.01196 0.98978 1.86782 1.18542 1.89630 1.05520 1.23748 1.01598 1.03974 0.98167 1.21028 0.94036 1.02715 0.77584 1.48187 1.66900 1.07080 1.15495 1.22819 1.02248 0.85651 0.95284 1.24267 1.04075 0.78778 0.96262 1.87289 1.77622 1.22150 1.37065 1.18547 0.77121 0.85990 0.79049 1.91094 1.56767 1.11108 1.80758 1.22981 0.99471 0.95786 1.05913 1.22586 0.91281 1.01878 1.02988 0.93041 0.89913 0.93359 0.90131 0.90930 0.88866 0.88295 0.88979 0.88883 0.87697 0.87681 0.90287 0.91472 0.92014 0.89620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.96 12.85 55.43 0.71 -24.25 16 2 C 0.07 1.98 5.44 -17.82 -0.10 1.89 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.49 -13.19 8.47 -34.44 -0.29 -13.48 16 8 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 9 C 0.05 1.31 1.34 -155.66 -0.21 1.10 16 10 C -0.02 -0.50 5.80 37.16 0.22 -0.28 16 11 S -0.23 -4.51 21.43 -107.50 -2.30 -6.81 16 12 C -0.13 -1.90 6.26 37.16 0.23 -1.67 16 13 C 0.17 2.12 6.02 -4.04 -0.02 2.10 16 14 N -0.63 -7.22 2.96 -178.84 -0.53 -7.75 16 15 C 0.06 0.40 7.70 -3.15 -0.02 0.38 16 16 C 0.04 0.24 8.23 37.73 0.31 0.55 16 17 O -0.33 -3.99 11.09 -37.83 -0.42 -4.41 16 18 C 0.64 9.43 8.85 53.71 0.48 9.91 16 19 O -0.51 -10.03 17.54 -19.12 -0.34 -10.36 16 20 C -0.20 -4.39 9.96 -26.73 -0.27 -4.65 16 21 C -0.15 -3.39 9.39 -26.73 -0.25 -3.64 16 22 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 23 H 0.08 2.03 8.14 -51.92 -0.42 1.61 16 24 H 0.05 0.96 8.09 -51.92 -0.42 0.54 16 25 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 26 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 27 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.10 1.44 7.92 -51.93 -0.41 1.03 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 LS Contribution 324.05 15.07 4.88 4.88 Total: -1.00 -32.71 324.05 -8.39 -41.11 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -5.45 Total: -1.18 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 0.07 Total: -7.81 kcal Atomic # 7 Polarization: -32.17 SS G_CDS: 0.18 Total: -31.99 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.75 Total: -14.77 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -4.51 SS G_CDS: -2.30 Total: -6.81 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.71 -8.39 -41.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902471631.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.475 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds