Wall clock time and date at job start Mon Mar 30 2020 01:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00255 * 2 1 4 4 H 1.48503 * 109.47416 * 269.99835 * 3 2 1 5 5 H 1.48507 * 109.47343 * 29.99745 * 3 2 1 6 6 H 1.48499 * 109.47569 * 149.99417 * 3 2 1 7 7 C 1.37884 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00027 * 175.08269 * 7 2 1 9 9 C 1.50700 * 119.99493 * 355.36229 * 7 2 1 10 10 C 1.53002 * 115.54672 * 279.20521 * 9 7 2 11 11 S 1.81398 * 109.47466 * 294.73931 * 10 9 7 12 12 C 1.81399 * 102.99832 * 180.02562 * 11 10 9 13 13 C 1.53011 * 109.46887 * 179.97438 * 12 11 10 14 14 N 1.46495 * 109.46880 * 180.02562 * 13 12 11 15 15 C 1.47098 * 125.55810 * 90.00496 * 14 13 12 16 16 C 1.54089 * 103.77401 * 179.97438 * 15 14 13 17 17 O 1.45703 * 104.01180 * 359.97438 * 16 15 14 18 18 C 1.33770 * 109.47359 * 359.75582 * 17 16 15 19 19 O 1.21515 * 123.07189 * 180.23895 * 18 17 16 20 20 C 1.53001 * 117.49832 * 133.50573 * 9 7 2 21 21 C 1.53003 * 117.50133 * 64.88144 * 9 7 2 22 22 H 0.97000 * 119.99877 * 5.01063 * 1 2 3 23 23 H 1.08999 * 109.47450 * 54.74449 * 10 9 7 24 24 H 1.09006 * 109.46501 * 174.74066 * 10 9 7 25 25 H 1.08992 * 109.47589 * 300.00054 * 12 11 10 26 26 H 1.09002 * 109.47101 * 60.00282 * 12 11 10 27 27 H 1.09002 * 109.46988 * 300.00542 * 13 12 11 28 28 H 1.09002 * 109.46909 * 60.00300 * 13 12 11 29 29 H 1.08995 * 110.56551 * 298.54344 * 15 14 13 30 30 H 1.08995 * 110.56609 * 61.40282 * 15 14 13 31 31 H 1.09000 * 110.52332 * 118.63077 * 16 15 14 32 32 H 1.09001 * 110.52425 * 241.22639 * 16 15 14 33 33 H 1.08998 * 117.49625 * 359.97438 * 20 9 7 34 34 H 1.08998 * 117.49958 * 145.01931 * 20 9 7 35 35 H 1.09002 * 117.49568 * 214.97797 * 21 9 7 36 36 H 1.08998 * 117.49593 * 359.97438 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0816 -1.1958 -0.0796 9 6 1.2546 -2.4970 0.1066 10 6 0.8308 -2.9011 1.5202 11 16 2.3062 -3.2232 2.5251 12 6 1.6104 -3.6806 4.1366 13 6 2.7467 -3.9888 5.1139 14 7 2.1847 -4.3588 6.4152 15 6 1.8343 -5.7231 6.8389 16 6 1.2967 -5.5359 8.2708 17 8 1.4000 -4.1009 8.5015 18 6 1.9124 -3.5104 7.4161 19 8 2.1090 -2.3135 7.3428 20 6 1.6420 -3.6159 -0.8623 21 6 0.3190 -2.8694 -1.0452 22 1 -0.4850 0.8368 -0.0734 23 1 0.2532 -2.0941 1.9710 24 1 0.2198 -3.8025 1.4724 25 1 1.0131 -2.8545 4.5222 26 1 0.9801 -4.5627 4.0231 27 1 3.3437 -4.8151 4.7280 28 1 3.3773 -3.1070 5.2275 29 1 1.0623 -6.1388 6.1914 30 1 2.7176 -6.3618 6.8421 31 1 0.2578 -5.8596 8.3343 32 1 1.9111 -6.0846 8.9845 33 1 2.4389 -3.4096 -1.5767 34 1 1.5949 -4.6403 -0.4928 35 1 -0.5984 -3.4027 -0.7960 36 1 0.2455 -2.1719 -1.8795 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902471631.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:28 Heat of formation + Delta-G solvation = -65.615231 kcal Electronic energy + Delta-G solvation = -18280.924491 eV Core-core repulsion = 15277.839247 eV Total energy + Delta-G solvation = -3003.085245 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.55214 -38.41751 -38.39158 -37.05009 -34.00302 -32.64183 -30.14202 -29.44476 -27.39674 -25.35911 -24.45267 -22.89674 -21.98197 -21.06414 -18.56408 -18.31772 -18.05880 -17.83080 -16.82415 -16.64089 -16.30547 -15.66888 -15.30140 -15.21791 -15.07117 -14.98382 -14.64948 -14.05319 -13.85385 -13.48059 -13.18834 -13.07149 -12.93650 -12.82949 -12.44679 -12.37265 -11.99479 -11.83704 -11.66892 -11.44266 -11.01302 -10.79091 -10.44213 -10.06332 -9.82397 -8.42617 -8.10909 -6.21013 0.63985 1.38023 1.42511 1.51250 1.55313 1.57045 1.88771 2.42459 2.62135 3.18102 3.37099 3.55089 3.59258 3.79007 4.03955 4.07527 4.19650 4.33693 4.40185 4.52229 4.56911 4.61240 4.69575 4.74164 4.82326 4.90080 4.95211 5.02597 5.25448 5.28427 5.57518 5.66322 5.78915 6.29156 6.38598 6.83061 6.85955 7.46863 8.96375 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.023478 B = 0.004346 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.317268 B = 6440.843205 C = 7178.148896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.029 3.971 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.495 4.495 8 H 0.049 0.951 9 C 0.023 3.977 10 C -0.015 4.015 11 S -0.251 6.251 12 C -0.106 4.106 13 C 0.173 3.827 14 N -0.622 5.622 15 C 0.060 3.940 16 C 0.035 3.965 17 O -0.349 6.349 18 C 0.634 3.366 19 O -0.580 6.580 20 C -0.176 4.176 21 C -0.152 4.152 22 H 0.259 0.741 23 H 0.046 0.954 24 H 0.071 0.929 25 H 0.052 0.948 26 H 0.101 0.899 27 H 0.129 0.871 28 H 0.073 0.927 29 H 0.113 0.887 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.137 0.863 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.001 -17.957 13.130 22.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.172 4.172 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.533 4.533 8 H 0.067 0.933 9 C 0.022 3.978 10 C -0.164 4.164 11 S -0.024 6.024 12 C -0.256 4.256 13 C 0.051 3.949 14 N -0.370 5.370 15 C -0.061 4.061 16 C -0.038 4.038 17 O -0.259 6.259 18 C 0.388 3.612 19 O -0.468 6.468 20 C -0.214 4.214 21 C -0.191 4.191 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.089 0.911 25 H 0.070 0.930 26 H 0.119 0.881 27 H 0.147 0.853 28 H 0.091 0.909 29 H 0.131 0.869 30 H 0.143 0.857 31 H 0.147 0.853 32 H 0.155 0.845 33 H 0.095 0.905 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.943 -17.085 13.125 21.744 hybrid contribution -1.274 1.396 0.048 1.891 sum 1.669 -15.689 13.172 20.553 Atomic orbital electron populations 1.70061 1.06850 1.27153 1.50568 1.25554 0.95495 1.01565 0.94537 0.85821 0.79023 0.80314 0.78216 1.19855 1.21346 1.19623 1.20589 0.92404 0.90082 1.50193 0.93311 1.18541 0.99784 0.93536 0.85973 1.22798 0.94749 1.00800 0.98063 1.86689 1.17930 1.89855 1.07904 1.23729 1.02329 1.03882 0.95674 1.20908 0.92992 1.03240 0.77717 1.48185 1.65727 1.08958 1.14098 1.23272 1.04393 0.82938 0.95543 1.24823 1.06535 0.75529 0.96925 1.87250 1.76909 1.25626 1.36080 1.18792 0.76756 0.85612 0.80013 1.91030 1.59504 1.14112 1.82176 1.22971 0.98048 0.96337 1.04005 1.22504 0.92721 1.02091 1.01829 0.93232 0.93513 0.91093 0.92953 0.88097 0.85337 0.90884 0.86890 0.85686 0.85277 0.84542 0.90510 0.88558 0.90442 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.38 12.85 21.45 0.28 -52.10 16 2 C 0.03 1.60 5.44 84.66 0.46 2.06 16 3 Si 0.94 45.04 29.54 68.60 2.03 47.07 16 4 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 6 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 7 C -0.49 -27.20 8.47 25.60 0.22 -26.99 16 8 H 0.05 2.74 7.82 -2.91 -0.02 2.72 16 9 C 0.02 1.12 1.34 -52.93 -0.07 1.05 16 10 C -0.02 -0.68 5.80 71.98 0.42 -0.26 16 11 S -0.25 -9.53 21.43 -56.49 -1.21 -10.74 16 12 C -0.11 -3.08 6.26 71.99 0.45 -2.63 16 13 C 0.17 4.09 6.02 86.38 0.52 4.61 16 14 N -0.62 -12.97 2.96 -951.44 -2.82 -15.79 16 15 C 0.06 0.49 7.70 86.63 0.67 1.16 16 16 C 0.04 0.27 8.23 72.35 0.60 0.87 16 17 O -0.35 -7.94 11.09 -47.30 -0.52 -8.47 16 18 C 0.63 18.54 8.85 129.91 1.15 19.69 16 19 O -0.58 -23.67 17.54 19.64 0.34 -23.33 16 20 C -0.18 -7.27 9.96 30.60 0.30 -6.97 16 21 C -0.15 -6.90 9.39 30.60 0.29 -6.61 16 22 H 0.26 14.38 8.32 -92.71 -0.77 13.61 16 23 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 24 H 0.07 2.71 8.09 -2.39 -0.02 2.69 16 25 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.07 2.13 7.92 -2.39 -0.02 2.11 16 29 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.14 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 34 H 0.10 3.40 8.14 -2.39 -0.02 3.39 16 35 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 36 H 0.06 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -74.79 324.05 4.15 -70.64 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 1.06 Total: 6.75 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 5.00 Total: -14.03 kcal Atomic # 7 Polarization: -65.35 SS G_CDS: -2.54 Total: -67.89 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -0.18 Total: -31.80 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Atomic # 16 Polarization: -9.53 SS G_CDS: -1.21 Total: -10.74 kcal Total: -74.79 4.15 -70.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902471631.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.026 kcal (2) G-P(sol) polarization free energy of solvation -74.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds