Wall clock time and date at job start Mon Mar 30 2020 01:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46997 * 2 1 4 4 H 1.09001 * 109.47502 * 55.00061 * 3 2 1 5 5 C 1.50706 * 109.47238 * 174.99896 * 3 2 1 6 6 H 1.07995 * 120.00167 * 119.72028 * 5 3 2 7 7 C 1.37879 * 119.99394 * 299.99727 * 5 3 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 3 10 10 H 1.48490 * 109.47405 * 60.00219 * 9 7 5 11 11 H 1.48503 * 109.46845 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47399 * 299.99813 * 9 7 5 13 13 N 1.46500 * 109.47007 * 294.99685 * 3 2 1 14 14 C 1.34773 * 120.00050 * 85.00124 * 13 3 2 15 15 O 1.21608 * 120.00072 * 0.02562 * 14 13 3 16 16 C 1.47383 * 119.99903 * 179.97438 * 14 13 3 17 17 C 1.38074 * 126.42626 * 269.99882 * 16 14 13 18 18 C 1.50692 * 126.28038 * 359.94587 * 17 16 14 19 19 N 1.34238 * 107.43614 * 179.97438 * 17 16 14 20 20 H 0.96995 * 125.73233 * 180.02562 * 19 17 16 21 21 N 1.39929 * 108.52428 * 0.02562 * 19 17 16 22 22 C 1.30530 * 108.89750 * 359.75329 * 21 19 17 23 23 Cl 1.73599 * 126.00815 * 180.26347 * 22 21 19 24 24 H 1.08993 * 109.47331 * 300.00296 * 1 2 3 25 25 H 1.09001 * 109.46791 * 60.00740 * 1 2 3 26 26 H 1.08996 * 109.46972 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47331 * 239.99704 * 2 1 3 28 28 H 1.09002 * 109.46801 * 119.99817 * 2 1 3 29 29 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 30 30 H 0.97002 * 120.00030 * 265.00025 * 13 3 2 31 31 H 1.09003 * 109.47318 * 89.99330 * 18 17 16 32 32 H 1.08994 * 109.47639 * 209.99917 * 18 17 16 33 33 H 1.09004 * 109.47219 * 330.00264 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1474 1.8849 -0.6544 7 6 4.1432 0.8785 1.2281 8 7 3.4061 0.3367 2.1730 9 14 6.0048 0.8814 1.3820 10 1 6.4993 2.2816 1.3823 11 1 6.3977 0.2169 2.6506 12 1 6.5976 0.1474 0.2352 13 7 1.6524 2.0974 -1.2518 14 6 0.4352 2.6643 -1.3671 15 8 -0.3414 2.6326 -0.4317 16 6 0.0456 3.3236 -2.6263 17 6 0.2407 4.6514 -2.9510 18 6 0.8916 5.6957 -2.0813 19 7 -0.2563 4.8413 -4.1835 20 1 -0.2575 5.6800 -4.6708 21 7 -0.7723 3.6260 -4.6469 22 6 -0.5938 2.7139 -3.7303 23 17 -1.0616 1.0461 -3.8453 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8292 -0.0617 2.9496 30 1 2.2720 2.1231 -1.9978 31 1 1.9639 5.7140 -2.2760 32 1 0.4649 6.6732 -2.3059 33 1 0.7170 5.4554 -1.0325 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907387878.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:06 Heat of formation + Delta-G solvation = -3.006118 kcal Electronic energy + Delta-G solvation = -18929.575224 eV Core-core repulsion = 15823.620864 eV Total energy + Delta-G solvation = -3105.954360 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.57925 -40.25251 -37.92381 -36.83329 -34.24539 -33.71731 -33.03855 -31.89581 -29.09974 -28.22030 -25.14549 -23.66362 -23.03414 -21.55565 -20.80622 -19.23979 -18.20622 -17.36082 -17.04572 -16.38861 -16.34239 -16.01784 -15.94124 -14.78475 -14.56410 -14.49121 -14.04224 -13.67411 -13.39025 -13.26521 -13.11302 -12.98413 -12.88060 -12.80188 -12.60814 -12.14798 -12.02939 -11.87205 -11.49743 -11.01133 -10.79805 -10.52474 -10.47035 -9.83504 -9.59104 -8.10732 -6.27637 0.38265 0.46393 1.04609 1.48668 1.50007 1.57682 1.74334 1.90838 2.41980 2.77788 3.18789 3.55462 3.80280 4.05533 4.19392 4.55270 4.63969 4.64984 4.70699 4.79013 4.84188 5.08782 5.15197 5.32473 5.49944 5.61289 5.66941 5.85253 5.96828 5.99418 6.21853 6.27766 6.79554 7.02369 7.38125 7.59878 8.94439 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022147 B = 0.005947 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.004301 B = 4706.826433 C = 5339.249148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.121 4.121 3 C 0.281 3.719 4 H 0.005 0.995 5 C -0.546 4.546 6 H 0.072 0.928 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.967 3.033 10 H -0.269 1.269 11 H -0.288 1.288 12 H -0.268 1.268 13 N -0.691 5.691 14 C 0.589 3.411 15 O -0.578 6.578 16 C -0.297 4.297 17 C 0.163 3.837 18 C -0.099 4.099 19 N -0.425 5.425 20 H 0.467 0.533 21 N -0.291 5.291 22 C 0.147 3.853 23 Cl 0.014 6.986 24 H 0.027 0.973 25 H 0.048 0.952 26 H 0.042 0.958 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.264 0.736 30 H 0.400 0.600 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.386 9.740 -12.932 16.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.160 4.160 3 C 0.178 3.822 4 H 0.023 0.977 5 C -0.584 4.584 6 H 0.090 0.910 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.792 3.208 10 H -0.194 1.194 11 H -0.214 1.214 12 H -0.193 1.193 13 N -0.338 5.338 14 C 0.374 3.626 15 O -0.459 6.459 16 C -0.313 4.313 17 C 0.029 3.971 18 C -0.157 4.157 19 N -0.137 5.137 20 H 0.318 0.682 21 N -0.118 5.118 22 C -0.045 4.045 23 Cl 0.042 6.958 24 H 0.046 0.954 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.234 0.766 31 H 0.129 0.871 32 H 0.138 0.862 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.410 9.673 -13.254 16.991 hybrid contribution 1.133 -0.386 0.624 1.350 sum -3.277 9.287 -12.630 16.016 Atomic orbital electron populations 1.21729 0.97151 0.99077 1.00600 1.21790 0.93642 0.99391 1.01171 1.18400 0.93664 0.89045 0.81136 0.97719 1.21533 0.91328 1.39077 1.06492 0.90987 1.25719 1.03027 0.94395 0.95082 1.70040 1.37046 1.38297 1.09892 0.85476 0.79425 0.78528 0.77367 1.19373 1.21378 1.19275 1.46257 1.14942 1.55146 1.17478 1.17378 0.81713 0.77769 0.85735 1.90744 1.52512 1.61159 1.41465 1.19949 1.18066 0.95215 0.98028 1.21742 0.93974 0.94331 0.87070 1.20783 1.01967 0.95673 0.97318 1.45771 1.45331 1.10261 1.12363 0.68239 1.77031 1.22621 0.90757 1.21351 1.22609 0.99791 0.89179 0.92886 1.98409 1.90602 1.08777 1.98047 0.95386 0.93347 0.93929 0.94360 0.90898 0.92643 0.76567 0.87129 0.86208 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.94 8.51 71.98 0.61 -5.33 16 2 C -0.12 -6.02 5.45 30.59 0.17 -5.85 16 3 C 0.28 14.20 2.24 44.25 0.10 14.30 16 4 H 0.00 0.29 7.58 -2.39 -0.02 0.27 16 5 C -0.55 -28.26 8.73 25.60 0.22 -28.04 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 7 C 0.02 0.95 5.29 84.66 0.45 1.40 16 8 N -0.91 -51.64 11.29 21.45 0.24 -51.40 16 9 Si 0.97 41.26 29.54 68.60 2.03 43.28 16 10 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 11 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 13 N -0.69 -28.76 5.02 -449.41 -2.26 -31.01 16 14 C 0.59 23.92 5.74 86.65 0.50 24.42 16 15 O -0.58 -28.11 14.24 -4.06 -0.06 -28.16 16 16 C -0.30 -9.62 5.88 -20.13 -0.12 -9.74 16 17 C 0.16 3.75 7.29 42.15 0.31 4.06 16 18 C -0.10 -1.63 10.25 71.23 0.73 -0.90 16 19 N -0.42 -8.04 7.28 -46.79 -0.34 -8.39 16 20 H 0.47 4.33 8.96 -213.44 -1.91 2.42 16 21 N -0.29 -7.83 12.64 -48.95 -0.62 -8.45 16 22 C 0.15 4.61 7.89 85.66 0.68 5.28 16 23 Cl 0.01 0.43 29.19 -2.72 -0.08 0.35 16 24 H 0.03 1.38 7.84 -2.39 -0.02 1.36 16 25 H 0.05 2.18 5.65 -2.39 -0.01 2.16 16 26 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.07 4.03 5.95 -2.39 -0.01 4.02 16 29 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 30 H 0.40 14.72 8.52 -92.71 -0.79 13.93 16 31 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 1.65 7.96 -2.39 -0.02 1.63 16 Total: -1.00 -68.74 298.87 1.02 -67.72 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -1.54 Total: 16.45 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 3.64 Total: -0.40 kcal Atomic # 7 Polarization: -96.27 SS G_CDS: -2.97 Total: -99.24 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.06 Total: -28.16 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.28 kcal Atomic # 17 Polarization: 0.43 SS G_CDS: -0.08 Total: 0.35 kcal Total: -68.74 1.02 -67.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907387878.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.714 kcal (2) G-P(sol) polarization free energy of solvation -68.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds