Wall clock time and date at job start Mon Mar 30 2020 00:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 119.99776 * 2 1 4 4 C 1.50704 * 109.46999 * 269.99819 * 3 2 1 5 5 H 1.08001 * 119.99923 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00049 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00129 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 120.00177 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47256 * 89.99972 * 8 6 4 10 10 H 1.48501 * 109.46977 * 210.00236 * 8 6 4 11 11 H 1.48500 * 109.46565 * 329.99733 * 8 6 4 12 12 C 1.38405 * 120.00369 * 179.97438 * 2 1 3 13 13 N 1.32507 * 119.21662 * 179.97438 * 12 2 1 14 14 C 1.32267 * 120.73805 * 179.75458 * 13 12 2 15 15 C 1.38625 * 119.19473 * 0.51654 * 14 13 12 16 16 C 1.38584 * 118.55842 * 359.49011 * 15 14 13 17 17 S 1.76200 * 120.39989 * 180.27703 * 16 15 14 18 18 C 1.81402 * 104.44885 * 90.00217 * 17 16 15 19 19 O 1.42098 * 104.27503 * 206.06953 * 17 16 15 20 20 O 1.42094 * 104.27885 * 333.92543 * 17 16 15 21 21 N 1.32289 * 119.19724 * 0.25213 * 16 15 14 22 22 H 1.09004 * 109.47196 * 269.99787 * 1 2 3 23 23 H 1.09001 * 109.47377 * 30.00136 * 1 2 3 24 24 H 1.08998 * 109.46731 * 150.00650 * 1 2 3 25 25 H 1.09002 * 109.47432 * 29.99458 * 3 2 1 26 26 H 1.09001 * 109.47256 * 150.00215 * 3 2 1 27 27 H 0.96998 * 119.99846 * 179.97438 * 7 6 4 28 28 H 1.07994 * 120.40074 * 180.28521 * 14 13 12 29 29 H 1.08002 * 120.72333 * 179.77106 * 15 14 13 30 30 H 1.08997 * 109.47072 * 60.00022 * 18 17 16 31 31 H 1.09004 * 109.47040 * 179.97438 * 18 17 16 32 32 H 1.09003 * 109.47095 * 299.99554 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0974 1.0961 -2.2417 6 6 3.1259 2.8780 -1.6728 7 7 3.5532 3.6182 -0.6732 8 14 3.4366 3.4176 -3.4340 9 1 2.3062 4.2601 -3.9004 10 1 4.6967 4.2009 -3.4967 11 1 3.5541 2.2205 -4.3050 12 6 2.1571 -1.1986 0.0005 13 7 3.4820 -1.1804 0.0000 14 6 4.1736 -2.3078 0.0054 15 6 3.4957 -3.5170 0.0007 16 6 2.1099 -3.4996 0.0013 17 16 1.1993 -5.0080 0.0028 18 6 0.9661 -5.3942 1.7599 19 8 -0.0411 -4.6691 -0.6020 20 8 2.0768 -5.9477 -0.6022 21 7 1.4792 -2.3367 0.0013 22 1 -0.3634 0.0000 1.0277 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5137 25 1 1.6083 2.0285 0.5137 26 1 3.1499 1.1385 0.5138 27 1 4.0300 4.4441 -0.8506 28 1 5.2533 -2.2866 0.0095 29 1 4.0356 -4.4523 0.0012 30 1 0.4147 -4.5855 2.2395 31 1 0.4046 -6.3235 1.8562 32 1 1.9386 -5.5055 2.2396 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911624458.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:57 Heat of formation + Delta-G solvation = 3.877463 kcal Electronic energy + Delta-G solvation = -18646.905095 eV Core-core repulsion = 15543.292936 eV Total energy + Delta-G solvation = -3103.612159 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.53609 -37.16976 -36.22287 -36.00383 -33.46924 -32.73299 -30.87479 -29.72952 -27.96734 -25.79438 -24.69198 -23.31760 -21.40419 -19.09666 -17.86179 -17.44306 -16.58463 -16.36405 -15.69070 -15.63537 -15.11705 -14.77778 -14.63086 -13.80410 -13.54035 -13.39602 -13.34837 -13.13018 -12.19169 -12.15889 -12.05565 -11.73854 -11.60132 -11.26094 -11.14270 -10.97114 -10.71586 -10.70369 -10.63074 -10.24753 -10.09508 -9.43920 -8.70706 -8.48710 -7.21937 -6.10396 -4.16676 -0.11875 0.93919 1.51569 2.64485 3.26406 3.32656 3.34120 3.42023 3.66312 3.99232 4.23295 4.38686 4.51180 4.55523 4.88339 5.16385 5.21799 5.27507 5.37579 5.40943 5.61176 5.90152 6.02693 6.34371 6.44317 6.88676 7.07849 7.32782 7.62401 7.82998 8.12710 8.13239 8.64768 8.89515 9.48316 10.95982 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.031776 B = 0.004877 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.950506 B = 5740.332903 C = 5904.604299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.558 5.558 3 C 0.253 3.747 4 C -0.527 4.527 5 H 0.056 0.944 6 C 0.064 3.936 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.556 3.444 13 N -0.510 5.510 14 C 0.188 3.812 15 C -0.241 4.241 16 C -0.333 4.333 17 S 2.509 3.491 18 C -0.644 4.644 19 O -0.916 6.916 20 O -0.931 6.931 21 N -0.499 5.499 22 H 0.045 0.955 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.037 0.963 26 H 0.052 0.948 27 H 0.264 0.736 28 H 0.170 0.830 29 H 0.153 0.847 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.891 -16.127 6.623 17.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.268 5.268 3 C 0.134 3.866 4 C -0.566 4.566 5 H 0.075 0.925 6 C -0.138 4.138 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.200 1.200 12 C 0.199 3.801 13 N -0.231 5.231 14 C 0.015 3.985 15 C -0.271 4.271 16 C -0.565 4.565 17 S 2.684 3.316 18 C -0.795 4.795 19 O -0.913 6.913 20 O -0.928 6.928 21 N -0.224 5.224 22 H 0.063 0.937 23 H 0.093 0.907 24 H 0.092 0.908 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.187 0.813 29 H 0.171 0.829 30 H 0.154 0.846 31 H 0.152 0.848 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.751 -15.183 5.941 16.730 hybrid contribution 1.169 0.264 -0.412 1.268 sum -2.582 -14.919 5.529 16.119 Atomic orbital electron populations 1.21620 0.78915 1.03252 1.00750 1.46948 1.05735 1.03026 1.71117 1.19480 0.92563 0.76777 0.97827 1.21407 1.36662 1.06425 0.92084 0.92546 1.24896 0.95237 0.96220 0.97463 1.69925 1.38313 1.14315 1.30725 0.86489 0.77728 0.78614 0.84551 1.20556 1.21019 1.19983 1.19587 0.85523 0.86499 0.88445 1.68187 1.07257 1.30980 1.16639 1.23119 1.00593 0.86699 0.88110 1.22141 0.94383 1.01653 1.08952 1.33213 1.04050 1.14660 1.04586 1.05392 0.74601 0.73575 0.77997 1.30149 1.12240 1.12368 1.24745 1.93599 1.42478 1.82414 1.72811 1.93604 1.66468 1.59384 1.73326 1.68021 1.38957 0.96716 1.18744 0.93673 0.90686 0.90827 0.94520 0.93045 0.92635 0.81301 0.82928 0.84635 0.84796 0.84917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.80 10.44 59.85 0.62 2.43 16 2 N -0.56 -12.44 2.96 -185.32 -0.55 -12.99 16 3 C 0.25 6.45 5.16 -5.19 -0.03 6.43 16 4 C -0.53 -14.70 9.39 -34.44 -0.32 -15.02 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 7 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 8 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.56 11.97 8.17 -322.81 -2.64 9.33 16 13 N -0.51 -10.76 9.11 -13.93 -0.13 -10.89 16 14 C 0.19 3.02 11.30 -17.22 -0.19 2.83 16 15 C -0.24 -3.39 9.59 -39.31 -0.38 -3.77 16 16 C -0.33 -5.12 6.56 -17.23 -0.11 -5.23 16 17 S 2.51 29.10 5.88 -107.50 -0.63 28.47 16 18 C -0.64 -4.14 10.80 101.05 1.09 -3.05 16 19 O -0.92 -14.15 17.76 -57.54 -1.02 -15.18 16 20 O -0.93 -12.37 17.20 -57.54 -0.99 -13.36 16 21 N -0.50 -9.44 8.85 -13.14 -0.12 -9.56 16 22 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.07 1.35 8.07 -51.93 -0.42 0.93 16 24 H 0.07 1.32 7.33 -51.93 -0.38 0.94 16 25 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 26 H 0.05 1.41 7.33 -51.93 -0.38 1.03 16 27 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.17 2.03 8.06 -52.49 -0.42 1.61 16 29 H 0.15 1.58 7.66 -52.49 -0.40 1.18 16 30 H 0.14 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.13 0.55 8.14 -51.92 -0.42 0.12 16 32 H 0.13 0.61 8.14 -51.92 -0.42 0.18 16 LS Contribution 297.99 15.07 4.49 4.49 Total: -1.00 -36.37 297.99 -8.94 -45.31 By element: Atomic # 1 Polarization: 0.13 SS G_CDS: -3.66 Total: -3.53 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -2.05 Total: -4.37 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.05 Total: -58.50 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -2.01 Total: -28.53 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 29.10 SS G_CDS: -0.63 Total: 28.47 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -36.37 -8.94 -45.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911624458.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.192 kcal (2) G-P(sol) polarization free energy of solvation -36.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds