Wall clock time and date at job start Mon Mar 30 2020 00:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 119.99776 * 2 1 4 4 C 1.50704 * 109.46999 * 269.99819 * 3 2 1 5 5 H 1.08001 * 119.99923 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00049 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00129 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 120.00177 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47256 * 89.99972 * 8 6 4 10 10 H 1.48501 * 109.46977 * 210.00236 * 8 6 4 11 11 H 1.48500 * 109.46565 * 329.99733 * 8 6 4 12 12 C 1.38405 * 120.00369 * 179.97438 * 2 1 3 13 13 N 1.32507 * 119.21662 * 179.97438 * 12 2 1 14 14 C 1.32267 * 120.73805 * 179.75458 * 13 12 2 15 15 C 1.38625 * 119.19473 * 0.51654 * 14 13 12 16 16 C 1.38584 * 118.55842 * 359.49011 * 15 14 13 17 17 S 1.76200 * 120.39989 * 180.27703 * 16 15 14 18 18 C 1.81402 * 104.44885 * 90.00217 * 17 16 15 19 19 O 1.42098 * 104.27503 * 206.06953 * 17 16 15 20 20 O 1.42094 * 104.27885 * 333.92543 * 17 16 15 21 21 N 1.32289 * 119.19724 * 0.25213 * 16 15 14 22 22 H 1.09004 * 109.47196 * 269.99787 * 1 2 3 23 23 H 1.09001 * 109.47377 * 30.00136 * 1 2 3 24 24 H 1.08998 * 109.46731 * 150.00650 * 1 2 3 25 25 H 1.09002 * 109.47432 * 29.99458 * 3 2 1 26 26 H 1.09001 * 109.47256 * 150.00215 * 3 2 1 27 27 H 0.96998 * 119.99846 * 179.97438 * 7 6 4 28 28 H 1.07994 * 120.40074 * 180.28521 * 14 13 12 29 29 H 1.08002 * 120.72333 * 179.77106 * 15 14 13 30 30 H 1.08997 * 109.47072 * 60.00022 * 18 17 16 31 31 H 1.09004 * 109.47040 * 179.97438 * 18 17 16 32 32 H 1.09003 * 109.47095 * 299.99554 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0974 1.0961 -2.2417 6 6 3.1259 2.8780 -1.6728 7 7 3.5532 3.6182 -0.6732 8 14 3.4366 3.4176 -3.4340 9 1 2.3062 4.2601 -3.9004 10 1 4.6967 4.2009 -3.4967 11 1 3.5541 2.2205 -4.3050 12 6 2.1571 -1.1986 0.0005 13 7 3.4820 -1.1804 0.0000 14 6 4.1736 -2.3078 0.0054 15 6 3.4957 -3.5170 0.0007 16 6 2.1099 -3.4996 0.0013 17 16 1.1993 -5.0080 0.0028 18 6 0.9661 -5.3942 1.7599 19 8 -0.0411 -4.6691 -0.6020 20 8 2.0768 -5.9477 -0.6022 21 7 1.4792 -2.3367 0.0013 22 1 -0.3634 0.0000 1.0277 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3633 -0.8900 -0.5137 25 1 1.6083 2.0285 0.5137 26 1 3.1499 1.1385 0.5138 27 1 4.0300 4.4441 -0.8506 28 1 5.2533 -2.2866 0.0095 29 1 4.0356 -4.4523 0.0012 30 1 0.4147 -4.5855 2.2395 31 1 0.4046 -6.3235 1.8562 32 1 1.9386 -5.5055 2.2396 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000911624458.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:57 Heat of formation + Delta-G solvation = -22.811579 kcal Electronic energy + Delta-G solvation = -18648.062419 eV Core-core repulsion = 15543.292936 eV Total energy + Delta-G solvation = -3104.769482 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.91099 -38.18229 -37.81337 -37.02627 -34.94132 -34.68405 -32.27407 -30.31973 -29.83041 -27.38645 -26.03295 -25.07298 -22.93427 -20.21015 -19.04726 -18.81483 -18.64939 -17.32293 -17.12067 -16.70216 -16.47987 -16.29642 -16.23579 -15.21693 -14.92355 -14.75010 -14.03077 -13.97196 -13.93729 -13.42847 -13.19232 -13.17404 -13.06984 -12.85087 -12.77795 -12.54578 -12.23242 -12.20888 -11.96849 -11.88477 -11.84112 -11.16769 -10.65382 -10.06522 -8.84361 -8.19375 -6.37553 -0.97510 -0.30913 0.18231 1.35247 1.36075 1.46644 1.66943 1.91545 2.36316 2.63688 2.96832 3.04618 3.06176 3.46655 3.72991 4.04483 4.12974 4.26069 4.29571 4.37844 4.47353 4.62337 4.87922 4.96662 4.97611 5.14225 5.29531 5.58501 5.77355 5.98566 6.07905 6.50710 6.71187 7.22329 7.34599 8.82593 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.031776 B = 0.004877 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.950506 B = 5740.332903 C = 5904.604299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.580 5.580 3 C 0.274 3.726 4 C -0.540 4.540 5 H 0.040 0.960 6 C 0.019 3.981 7 N -0.922 5.922 8 Si 0.962 3.038 9 H -0.268 1.268 10 H -0.275 1.275 11 H -0.280 1.280 12 C 0.533 3.467 13 N -0.560 5.560 14 C 0.178 3.822 15 C -0.222 4.222 16 C -0.350 4.350 17 S 2.514 3.486 18 C -0.609 4.609 19 O -0.962 6.962 20 O -0.950 6.950 21 N -0.511 5.511 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.023 0.977 26 H 0.025 0.975 27 H 0.268 0.732 28 H 0.205 0.795 29 H 0.197 0.803 30 H 0.145 0.855 31 H 0.170 0.830 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.544 -18.393 7.266 19.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.293 5.293 3 C 0.153 3.847 4 C -0.579 4.579 5 H 0.058 0.942 6 C -0.181 4.181 7 N -0.561 5.561 8 Si 0.787 3.213 9 H -0.193 1.193 10 H -0.200 1.200 11 H -0.205 1.205 12 C 0.177 3.823 13 N -0.281 5.281 14 C 0.007 3.993 15 C -0.250 4.250 16 C -0.577 4.577 17 S 2.691 3.309 18 C -0.765 4.765 19 O -0.959 6.959 20 O -0.947 6.947 21 N -0.236 5.236 22 H 0.085 0.915 23 H 0.089 0.911 24 H 0.093 0.907 25 H 0.041 0.959 26 H 0.043 0.957 27 H 0.077 0.923 28 H 0.222 0.778 29 H 0.214 0.786 30 H 0.163 0.837 31 H 0.187 0.813 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.367 -17.468 6.542 18.955 hybrid contribution 1.110 0.707 -0.507 1.410 sum -2.257 -16.762 6.035 17.957 Atomic orbital electron populations 1.21670 0.77284 1.02996 1.02065 1.46747 1.06681 1.02495 1.73393 1.18895 0.91473 0.78224 0.96074 1.21576 1.36919 1.06576 0.92785 0.94196 1.25669 0.94857 0.96168 1.01421 1.70017 1.38782 1.14719 1.32618 0.85508 0.78181 0.78009 0.79604 1.19348 1.20007 1.20505 1.19732 0.85988 0.86968 0.89655 1.68151 1.07710 1.33750 1.18525 1.23854 1.02243 0.86294 0.86955 1.22669 0.94109 1.02628 1.05577 1.34191 1.05477 1.14855 1.03192 1.05422 0.72962 0.71760 0.80780 1.29928 1.14853 1.14236 1.17452 1.93547 1.43619 1.82583 1.76114 1.93572 1.66602 1.58476 1.76011 1.68044 1.39287 0.96952 1.19311 0.91540 0.91149 0.90720 0.95873 0.95730 0.92260 0.77797 0.78626 0.83660 0.81259 0.81889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.88 10.44 127.77 1.33 5.22 16 2 N -0.58 -26.91 2.96 -740.21 -2.19 -29.10 16 3 C 0.27 14.70 5.16 85.63 0.44 15.14 16 4 C -0.54 -31.17 9.39 25.60 0.24 -30.93 16 5 H 0.04 2.38 7.81 -2.91 -0.02 2.36 16 6 C 0.02 1.05 5.46 84.65 0.46 1.52 16 7 N -0.92 -54.21 13.29 21.45 0.28 -53.93 16 8 Si 0.96 44.98 29.54 68.60 2.03 47.00 16 9 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 12 C 0.53 23.51 8.17 261.49 2.14 25.64 16 13 N -0.56 -24.09 9.11 -197.98 -1.80 -25.89 16 14 C 0.18 5.50 11.30 84.72 0.96 6.46 16 15 C -0.22 -5.70 9.59 22.44 0.22 -5.49 16 16 C -0.35 -10.25 6.56 84.71 0.56 -9.69 16 17 S 2.51 52.42 5.88 -56.49 -0.33 52.09 16 18 C -0.61 -4.74 10.80 113.37 1.22 -3.52 16 19 O -0.96 -28.99 17.76 -127.65 -2.27 -31.26 16 20 O -0.95 -22.74 17.20 -127.65 -2.20 -24.94 16 21 N -0.51 -19.34 8.85 -195.47 -1.73 -21.07 16 22 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 23 H 0.07 2.64 8.07 -2.39 -0.02 2.62 16 24 H 0.07 2.75 7.33 -2.39 -0.02 2.74 16 25 H 0.02 1.28 8.07 -2.39 -0.02 1.26 16 26 H 0.02 1.43 7.33 -2.39 -0.02 1.41 16 27 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 28 H 0.21 4.49 8.06 -2.91 -0.02 4.46 16 29 H 0.20 3.21 7.66 -2.91 -0.02 3.19 16 30 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.17 0.34 8.14 -2.39 -0.02 0.33 16 32 H 0.16 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -82.62 297.99 0.49 -82.12 By element: Atomic # 1 Polarization: -0.51 SS G_CDS: 1.13 Total: 0.62 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: 7.57 Total: 4.35 kcal Atomic # 7 Polarization: -124.55 SS G_CDS: -5.44 Total: -129.99 kcal Atomic # 8 Polarization: -51.74 SS G_CDS: -4.46 Total: -56.20 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 16 Polarization: 52.42 SS G_CDS: -0.33 Total: 52.09 kcal Total: -82.62 0.49 -82.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911624458.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.313 kcal (2) G-P(sol) polarization free energy of solvation -82.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds