Wall clock time and date at job start Mon Mar 30 2020 00:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42106 * 110.54204 * 2 1 4 4 O 1.42102 * 110.54447 * 223.25010 * 2 1 3 5 5 C 1.76196 * 104.45138 * 111.62609 * 2 1 3 6 6 C 1.38629 * 120.40434 * 89.99906 * 5 2 1 7 7 C 1.38580 * 118.55892 * 180.30331 * 6 5 2 8 8 N 1.32288 * 119.19605 * 359.43588 * 7 6 5 9 9 C 1.32481 * 120.74379 * 0.57648 * 8 7 6 10 10 N 1.38405 * 119.21459 * 179.72269 * 9 8 7 11 11 C 1.46499 * 120.00361 * 359.97438 * 10 9 8 12 12 C 1.53001 * 109.47096 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47191 * 180.02562 * 12 11 10 14 14 H 1.08005 * 120.00087 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00343 * 179.97438 * 13 12 11 16 16 N 1.31521 * 119.99863 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00474 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46919 * 90.00175 * 17 15 13 19 19 H 1.48494 * 109.47111 * 210.00027 * 17 15 13 20 20 H 1.48499 * 109.46745 * 330.00083 * 17 15 13 21 21 N 1.32269 * 120.40056 * 270.02596 * 5 2 1 22 22 H 1.09002 * 109.47069 * 308.37711 * 1 2 3 23 23 H 1.09008 * 109.47108 * 68.37649 * 1 2 3 24 24 H 1.08999 * 109.47000 * 188.37368 * 1 2 3 25 25 H 1.08002 * 120.71605 * 0.02562 * 6 5 2 26 26 H 1.07998 * 120.39831 * 179.70315 * 7 6 5 27 27 H 0.97005 * 119.99395 * 179.97438 * 10 9 8 28 28 H 1.09001 * 109.46762 * 299.99682 * 11 10 9 29 29 H 1.08997 * 109.46879 * 60.00069 * 11 10 9 30 30 H 1.09006 * 109.47054 * 299.99977 * 12 11 10 31 31 H 1.09002 * 109.47197 * 59.99788 * 12 11 10 32 32 H 0.97001 * 120.00020 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 6 2.2537 -0.6288 1.5861 6 6 2.4288 -1.9907 1.7770 7 6 2.7682 -2.4441 3.0418 8 7 2.9251 -1.5683 4.0207 9 6 2.7505 -0.2729 3.8050 10 7 2.9173 0.6151 4.8534 11 6 3.2822 0.1190 6.1826 12 6 3.4031 1.2971 7.1513 13 6 3.7790 0.7869 8.5184 14 1 3.9175 -0.2720 8.6804 15 6 3.9463 1.6716 9.5626 16 7 3.7773 2.9609 9.3655 17 14 4.4117 1.0390 11.2575 18 1 5.8909 0.9985 11.3818 19 1 3.8525 1.9434 12.2941 20 1 3.8616 -0.3277 11.4440 21 7 2.4202 0.1928 2.6092 22 1 -0.3633 0.6380 0.8056 23 1 -0.3634 0.3787 -0.9554 24 1 -0.3633 -1.0167 0.1497 25 1 2.2990 -2.6836 0.9589 26 1 2.9071 -3.4993 3.2250 27 1 2.7925 1.5661 4.7080 28 1 2.5131 -0.5667 6.5382 29 1 4.2370 -0.4037 6.1258 30 1 4.1724 1.9826 6.7955 31 1 2.4485 1.8202 7.2081 32 1 3.8953 3.5834 10.1000 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912043865.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:17 Heat of formation + Delta-G solvation = -13.421154 kcal Electronic energy + Delta-G solvation = -17878.084145 eV Core-core repulsion = 14773.721862 eV Total energy + Delta-G solvation = -3104.362283 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.91676 -37.35023 -36.23875 -36.13269 -33.80210 -33.27053 -31.38530 -29.88154 -28.99175 -25.46251 -24.69496 -23.11652 -21.11647 -19.47734 -18.33656 -17.89132 -16.63996 -16.54353 -15.96229 -15.77534 -15.43479 -15.25408 -14.57884 -14.03515 -13.95872 -13.74098 -13.57772 -13.52991 -12.36719 -12.31677 -12.22792 -11.90348 -11.41180 -11.32963 -11.25739 -11.08300 -11.04782 -10.82321 -10.66996 -9.99175 -9.68715 -9.37272 -9.16060 -8.48666 -7.86908 -6.13094 -4.16868 -0.31665 0.56616 1.12514 2.43545 3.08540 3.26604 3.33119 3.36666 3.42957 3.80012 3.86606 4.21724 4.37035 4.42082 4.59319 4.85194 4.99921 5.07706 5.23900 5.27991 5.29293 6.00590 6.21064 6.23980 6.62494 6.65635 7.19089 7.43752 7.55130 7.66542 7.84652 8.18230 8.37091 8.88731 9.48122 10.98500 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.043100 B = 0.003416 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.495583 B = 8195.748704 C = 8620.666677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.643 4.643 2 S 2.509 3.491 3 O -0.912 6.912 4 O -0.929 6.929 5 C -0.329 4.329 6 C -0.233 4.233 7 C 0.192 3.808 8 N -0.531 5.531 9 C 0.553 3.447 10 N -0.679 5.679 11 C 0.135 3.865 12 C 0.011 3.989 13 C -0.523 4.523 14 H 0.060 0.940 15 C 0.059 3.941 16 N -0.892 5.892 17 Si 0.898 3.102 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.272 1.272 21 N -0.492 5.492 22 H 0.136 0.864 23 H 0.136 0.864 24 H 0.133 0.867 25 H 0.158 0.842 26 H 0.174 0.826 27 H 0.416 0.584 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.024 0.976 31 H 0.024 0.976 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.885 -9.150 -18.487 22.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.683 3.317 3 O -0.909 6.909 4 O -0.925 6.925 5 C -0.561 4.561 6 C -0.262 4.262 7 C 0.020 3.980 8 N -0.254 5.254 9 C 0.195 3.805 10 N -0.311 5.311 11 C 0.012 3.988 12 C -0.027 4.027 13 C -0.561 4.561 14 H 0.078 0.922 15 C -0.143 4.143 16 N -0.531 5.531 17 Si 0.726 3.274 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.197 1.197 21 N -0.216 5.216 22 H 0.155 0.845 23 H 0.155 0.845 24 H 0.151 0.849 25 H 0.176 0.824 26 H 0.191 0.809 27 H 0.253 0.747 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.105 -8.077 -17.949 20.926 hybrid contribution -0.285 -0.829 1.032 1.354 sum -7.390 -8.906 -16.917 20.497 Atomic orbital electron populations 1.30145 1.24673 1.12290 1.12333 1.05501 0.78309 0.74795 0.73082 1.93623 1.76895 1.35529 1.84831 1.93616 1.77770 1.62284 1.58839 1.33467 1.05143 0.99237 1.18231 1.22240 1.07419 0.95735 1.00833 1.23114 0.87806 0.99576 0.87504 1.68072 1.19430 1.02084 1.35819 1.19728 0.88108 0.86381 0.86332 1.44966 1.70664 1.08059 1.07446 1.21840 0.99332 0.99360 0.78233 1.19354 0.98040 0.92288 0.92995 1.20987 1.47976 0.93708 0.93465 0.92180 1.25006 0.95149 0.94819 0.99302 1.69961 1.49077 1.01594 1.32444 0.86489 0.78721 0.78777 0.83420 1.20528 1.21139 1.19726 1.68064 1.17450 1.37380 0.98664 0.84497 0.84538 0.84863 0.82399 0.80852 0.74667 0.92245 0.92270 0.95757 0.95786 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -3.16 10.80 101.05 1.09 -2.07 16 2 S 2.51 24.15 5.88 -107.50 -0.63 23.51 16 3 O -0.91 -12.66 17.76 -57.54 -1.02 -13.68 16 4 O -0.93 -10.43 17.20 -57.54 -0.99 -11.42 16 5 C -0.33 -4.17 6.56 -17.22 -0.11 -4.29 16 6 C -0.23 -2.54 9.59 -39.31 -0.38 -2.92 16 7 C 0.19 2.31 11.30 -17.23 -0.19 2.11 16 8 N -0.53 -8.69 9.59 -13.94 -0.13 -8.82 16 9 C 0.55 9.72 8.43 -322.81 -2.72 7.00 16 10 N -0.68 -12.56 5.70 -62.31 -0.36 -12.91 16 11 C 0.13 2.78 5.59 -4.04 -0.02 2.76 16 12 C 0.01 0.27 5.09 -27.89 -0.14 0.12 16 13 C -0.52 -14.27 9.11 -34.44 -0.31 -14.59 16 14 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 17 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 N -0.49 -7.91 10.20 -13.13 -0.13 -8.05 16 22 H 0.14 0.66 8.14 -51.92 -0.42 0.24 16 23 H 0.14 0.38 8.14 -51.92 -0.42 -0.04 16 24 H 0.13 0.39 8.14 -51.92 -0.42 -0.03 16 25 H 0.16 1.16 7.66 -52.49 -0.40 0.76 16 26 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 27 H 0.42 7.32 8.59 -40.82 -0.35 6.97 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 299.73 15.07 4.52 4.52 Total: -1.00 -36.03 299.73 -9.60 -45.63 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -3.68 Total: 0.74 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -2.89 Total: -10.31 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: 0.11 Total: -55.10 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -2.01 Total: -25.10 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 24.15 SS G_CDS: -0.63 Total: 23.51 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -36.03 -9.60 -45.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912043865.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.208 kcal (2) G-P(sol) polarization free energy of solvation -36.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds