Wall clock time and date at job start Mon Mar 30 2020 00:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42106 * 110.54204 * 2 1 4 4 O 1.42102 * 110.54447 * 223.25010 * 2 1 3 5 5 C 1.76196 * 104.45138 * 111.62609 * 2 1 3 6 6 C 1.38629 * 120.40434 * 89.99906 * 5 2 1 7 7 C 1.38580 * 118.55892 * 180.30331 * 6 5 2 8 8 N 1.32288 * 119.19605 * 359.43588 * 7 6 5 9 9 C 1.32481 * 120.74379 * 0.57648 * 8 7 6 10 10 N 1.38405 * 119.21459 * 179.72269 * 9 8 7 11 11 C 1.46499 * 120.00361 * 359.97438 * 10 9 8 12 12 C 1.53001 * 109.47096 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47191 * 180.02562 * 12 11 10 14 14 H 1.08005 * 120.00087 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00343 * 179.97438 * 13 12 11 16 16 N 1.31521 * 119.99863 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00474 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46919 * 90.00175 * 17 15 13 19 19 H 1.48494 * 109.47111 * 210.00027 * 17 15 13 20 20 H 1.48499 * 109.46745 * 330.00083 * 17 15 13 21 21 N 1.32269 * 120.40056 * 270.02596 * 5 2 1 22 22 H 1.09002 * 109.47069 * 308.37711 * 1 2 3 23 23 H 1.09008 * 109.47108 * 68.37649 * 1 2 3 24 24 H 1.08999 * 109.47000 * 188.37368 * 1 2 3 25 25 H 1.08002 * 120.71605 * 0.02562 * 6 5 2 26 26 H 1.07998 * 120.39831 * 179.70315 * 7 6 5 27 27 H 0.97005 * 119.99395 * 179.97438 * 10 9 8 28 28 H 1.09001 * 109.46762 * 299.99682 * 11 10 9 29 29 H 1.08997 * 109.46879 * 60.00069 * 11 10 9 30 30 H 1.09006 * 109.47054 * 299.99977 * 12 11 10 31 31 H 1.09002 * 109.47197 * 59.99788 * 12 11 10 32 32 H 0.97001 * 120.00020 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 6 2.2537 -0.6288 1.5861 6 6 2.4288 -1.9907 1.7770 7 6 2.7682 -2.4441 3.0418 8 7 2.9251 -1.5683 4.0207 9 6 2.7505 -0.2729 3.8050 10 7 2.9173 0.6151 4.8534 11 6 3.2822 0.1190 6.1826 12 6 3.4031 1.2971 7.1513 13 6 3.7790 0.7869 8.5184 14 1 3.9175 -0.2720 8.6804 15 6 3.9463 1.6716 9.5626 16 7 3.7773 2.9609 9.3655 17 14 4.4117 1.0390 11.2575 18 1 5.8909 0.9985 11.3818 19 1 3.8525 1.9434 12.2941 20 1 3.8616 -0.3277 11.4440 21 7 2.4202 0.1928 2.6092 22 1 -0.3633 0.6380 0.8056 23 1 -0.3634 0.3787 -0.9554 24 1 -0.3633 -1.0167 0.1497 25 1 2.2990 -2.6836 0.9589 26 1 2.9071 -3.4993 3.2250 27 1 2.7925 1.5661 4.7080 28 1 2.5131 -0.5667 6.5382 29 1 4.2370 -0.4037 6.1258 30 1 4.1724 1.9826 6.7955 31 1 2.4485 1.8202 7.2081 32 1 3.8953 3.5834 10.1000 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912043865.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:17 Heat of formation + Delta-G solvation = -41.030718 kcal Electronic energy + Delta-G solvation = -17879.281386 eV Core-core repulsion = 14773.721862 eV Total energy + Delta-G solvation = -3105.559524 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.02139 -38.20431 -37.64583 -37.05412 -35.19143 -34.89025 -32.85842 -30.63799 -30.31481 -26.91995 -26.08518 -24.37710 -22.89808 -20.42252 -19.38661 -18.98629 -18.46054 -17.36054 -17.22354 -16.65895 -16.50928 -16.47245 -16.34081 -15.54690 -15.29945 -14.97265 -14.28676 -14.01162 -13.95679 -13.27483 -13.20645 -13.12477 -13.08719 -12.89769 -12.55377 -12.50519 -12.23561 -12.15807 -11.92194 -11.62967 -11.47553 -11.41934 -10.60492 -10.26254 -9.17935 -8.25452 -6.37037 -1.01944 -0.43655 0.07755 1.41347 1.42590 1.53740 1.63357 1.85684 2.40679 2.52367 2.93822 2.98079 3.09563 3.32952 3.70358 3.97995 4.10734 4.20949 4.27001 4.33412 4.46816 4.48170 4.81726 4.95684 5.08231 5.33984 5.51728 5.53392 5.74619 5.96607 6.14474 6.34410 6.77011 7.12724 7.32772 8.86946 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.043100 B = 0.003416 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.495583 B = 8195.748704 C = 8620.666677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.612 4.612 2 S 2.514 3.486 3 O -0.964 6.964 4 O -0.947 6.947 5 C -0.348 4.348 6 C -0.213 4.213 7 C 0.186 3.814 8 N -0.561 5.561 9 C 0.533 3.467 10 N -0.693 5.693 11 C 0.164 3.836 12 C 0.019 3.981 13 C -0.543 4.543 14 H 0.066 0.934 15 C 0.004 3.996 16 N -0.930 5.930 17 Si 0.970 3.030 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.261 1.261 21 N -0.516 5.516 22 H 0.143 0.857 23 H 0.168 0.832 24 H 0.165 0.835 25 H 0.200 0.800 26 H 0.218 0.782 27 H 0.414 0.586 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.001 0.999 31 H 0.005 0.995 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.156 -11.569 -19.535 24.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.768 4.768 2 S 2.691 3.309 3 O -0.961 6.961 4 O -0.944 6.944 5 C -0.575 4.575 6 C -0.240 4.240 7 C 0.016 3.984 8 N -0.284 5.284 9 C 0.175 3.825 10 N -0.328 5.328 11 C 0.041 3.959 12 C -0.019 4.019 13 C -0.582 4.582 14 H 0.084 0.916 15 C -0.195 4.195 16 N -0.570 5.570 17 Si 0.794 3.206 18 H -0.198 1.198 19 H -0.207 1.207 20 H -0.185 1.185 21 N -0.240 5.240 22 H 0.161 0.839 23 H 0.186 0.814 24 H 0.183 0.817 25 H 0.217 0.783 26 H 0.234 0.766 27 H 0.251 0.749 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.019 0.981 31 H 0.023 0.977 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.335 -10.552 -19.041 23.311 hybrid contribution 0.003 -0.180 1.132 1.146 sum -8.332 -10.732 -17.909 22.480 Atomic orbital electron populations 1.29951 1.17513 1.14861 1.14441 1.05408 0.80832 0.73147 0.71513 1.93563 1.79832 1.37713 1.84999 1.93582 1.80033 1.62201 1.58538 1.34173 1.04811 1.00171 1.18367 1.22804 1.04057 0.95613 1.01533 1.23961 0.86373 1.00882 0.87166 1.68080 1.20424 1.02034 1.37836 1.19767 0.89411 0.86785 0.86569 1.44622 1.72763 1.08260 1.07198 1.21230 0.98851 0.97070 0.78782 1.19167 0.96016 0.93174 0.93510 1.21433 1.47833 0.94163 0.94724 0.91604 1.25956 0.94955 0.94945 1.03644 1.70090 1.50143 1.02931 1.33806 0.85371 0.78551 0.78568 0.78104 1.19843 1.20717 1.18519 1.68035 1.18410 1.38644 0.98861 0.83870 0.81438 0.81699 0.78269 0.76564 0.74851 0.92484 0.93034 0.98085 0.97691 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.61 -3.45 10.80 113.37 1.22 -2.22 16 2 S 2.51 44.16 5.88 -56.49 -0.33 43.83 16 3 O -0.96 -26.96 17.76 -127.65 -2.27 -29.23 16 4 O -0.95 -19.21 17.20 -127.65 -2.20 -21.41 16 5 C -0.35 -8.34 6.56 84.72 0.56 -7.78 16 6 C -0.21 -3.99 9.59 22.44 0.22 -3.78 16 7 C 0.19 4.01 11.30 84.71 0.96 4.97 16 8 N -0.56 -17.99 9.59 -198.00 -1.90 -19.89 16 9 C 0.53 19.04 8.43 261.49 2.20 21.24 16 10 N -0.69 -26.90 5.70 -351.05 -2.00 -28.90 16 11 C 0.16 7.04 5.59 86.38 0.48 7.52 16 12 C 0.02 0.98 5.09 29.85 0.15 1.13 16 13 C -0.54 -30.28 9.11 25.60 0.23 -30.05 16 14 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 15 C 0.00 0.20 5.46 84.65 0.46 0.66 16 16 N -0.93 -55.60 13.29 21.45 0.28 -55.32 16 17 Si 0.97 43.48 29.54 68.60 2.03 45.50 16 18 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 19 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 20 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 21 N -0.52 -16.71 10.20 -195.45 -1.99 -18.70 16 22 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.17 0.09 8.14 -2.39 -0.02 0.07 16 24 H 0.16 0.02 8.14 -2.39 -0.02 0.00 16 25 H 0.20 1.99 7.66 -2.91 -0.02 1.97 16 26 H 0.22 2.51 8.06 -2.91 -0.02 2.49 16 27 H 0.41 15.68 8.59 -92.70 -0.80 14.88 16 28 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 31 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -81.37 299.73 -1.54 -82.91 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 0.35 Total: 9.52 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: 6.49 Total: -8.31 kcal Atomic # 7 Polarization: -117.21 SS G_CDS: -5.61 Total: -122.82 kcal Atomic # 8 Polarization: -46.18 SS G_CDS: -4.46 Total: -50.64 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: 44.16 SS G_CDS: -0.33 Total: 43.83 kcal Total: -81.37 -1.54 -82.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912043865.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.881 kcal (2) G-P(sol) polarization free energy of solvation -81.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds