Wall clock time and date at job start Mon Mar 30 2020 01:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99713 * 3 2 1 5 5 H 1.48494 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47196 * 120.00210 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 O 1.45206 * 109.46777 * 180.02562 * 10 9 7 12 12 C 1.34662 * 116.99872 * 179.97438 * 11 10 9 13 13 O 1.21413 * 120.00259 * 0.02562 * 12 11 10 14 14 C 1.48184 * 120.00004 * 179.97438 * 12 11 10 15 15 C 1.40311 * 119.24431 * 179.97438 * 14 12 11 16 16 C 1.36513 * 119.81287 * 179.97438 * 15 14 12 17 17 C 1.40754 * 118.24246 * 0.02562 * 16 15 14 18 18 C 1.40423 * 121.27939 * 180.02562 * 17 16 15 19 19 C 1.36129 * 119.65455 * 180.02562 * 18 17 16 20 20 C 1.39443 * 120.91523 * 359.95084 * 19 18 17 21 21 C 1.35983 * 121.08659 * 0.03094 * 20 19 18 22 22 C 1.40838 * 119.73529 * 359.97438 * 21 20 19 23 23 N 1.31913 * 119.24531 * 359.72956 * 14 12 11 24 24 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 26 26 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 27 27 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 28 28 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 29 29 H 1.07998 * 120.09617 * 0.02562 * 15 14 12 30 30 H 1.07997 * 120.87335 * 179.97438 * 16 15 14 31 31 H 1.07997 * 120.17136 * 359.96777 * 18 17 16 32 32 H 1.07992 * 119.54255 * 179.97438 * 19 18 17 33 33 H 1.08004 * 119.45574 * 180.02562 * 20 19 18 34 34 H 1.08004 * 120.13599 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 8 1.5192 -4.9196 0.0033 12 6 2.2526 -6.0490 0.0036 13 8 3.4651 -5.9855 0.0040 14 6 1.5799 -7.3693 0.0048 15 6 2.3596 -8.5359 0.0046 16 6 1.7519 -9.7583 0.0061 17 6 0.3451 -9.8028 0.0073 18 6 -0.3457 -11.0254 0.0094 19 6 -1.7070 -11.0298 0.0100 20 6 -2.4273 -9.8358 0.0095 21 6 -1.7928 -8.6331 0.0078 22 6 -0.3852 -8.5858 0.0071 23 7 0.2618 -7.4210 0.0108 24 1 -0.4851 0.8400 -0.0004 25 1 0.6240 -2.5576 -0.8880 26 1 0.6247 -2.5563 0.8920 27 1 2.8719 -3.6036 0.8927 28 1 2.8719 -3.6052 -0.8873 29 1 3.4374 -8.4669 0.0041 30 1 2.3353 -10.6671 0.0056 31 1 0.2002 -11.9572 0.0097 32 1 -2.2364 -11.9711 0.0112 33 1 -3.5069 -9.8669 0.0103 34 1 -2.3660 -7.7177 0.0078 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916613052.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:52 Heat of formation + Delta-G solvation = -36.809714 kcal Electronic energy + Delta-G solvation = -18927.129093 eV Core-core repulsion = 15789.848998 eV Total energy + Delta-G solvation = -3137.280095 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.17887 -39.73378 -37.27214 -36.08166 -33.83737 -33.28900 -31.12409 -30.40433 -30.03774 -26.01404 -24.69467 -23.89592 -22.35880 -21.59144 -20.69704 -18.34472 -18.12077 -17.36336 -16.55301 -16.03605 -15.87920 -15.34504 -14.85040 -14.58947 -14.57598 -14.44702 -13.70632 -13.36651 -13.25649 -12.78061 -12.32492 -11.96123 -11.92315 -11.77042 -11.20169 -11.02814 -10.86777 -10.76210 -10.71488 -10.49860 -9.81904 -9.62137 -9.54486 -9.27474 -9.07713 -8.56581 -8.40427 -6.06443 -4.11039 -0.05574 0.40440 1.68728 2.18578 2.92606 3.05454 3.32550 3.36393 3.39600 3.90488 3.95403 4.27296 4.41150 4.49616 4.51577 4.71761 4.85025 4.96361 5.10298 5.17160 5.29762 5.49535 5.63755 5.72794 5.77903 6.03117 6.08322 6.11302 6.11598 6.19622 6.51393 6.66288 6.87872 7.48895 7.61599 7.67852 7.90018 8.16289 8.27872 8.94323 9.52913 11.05013 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.032486 B = 0.003362 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.703152 B = 8325.292652 C = 9166.548523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.072 3.928 11 O -0.329 6.329 12 C 0.512 3.488 13 O -0.505 6.505 14 C 0.134 3.866 15 C -0.121 4.121 16 C -0.066 4.066 17 C -0.085 4.085 18 C -0.105 4.105 19 C -0.104 4.104 20 C -0.109 4.109 21 C -0.076 4.076 22 C 0.118 3.882 23 N -0.409 5.409 24 H 0.264 0.736 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.153 0.847 30 H 0.148 0.852 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.133 0.867 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.271 -24.615 0.011 24.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.001 4.001 11 O -0.244 6.244 12 C 0.354 3.646 13 O -0.394 6.394 14 C -0.018 4.018 15 C -0.142 4.142 16 C -0.092 4.092 17 C -0.087 4.087 18 C -0.124 4.124 19 C -0.122 4.122 20 C -0.129 4.129 21 C -0.094 4.094 22 C -0.006 4.006 23 N -0.120 5.120 24 H 0.073 0.927 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.171 0.829 30 H 0.166 0.834 31 H 0.150 0.850 32 H 0.147 0.853 33 H 0.151 0.849 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.630 -23.633 0.019 23.779 hybrid contribution 1.046 0.239 -0.003 1.073 sum -1.584 -23.394 0.015 23.448 Atomic orbital electron populations 1.69969 1.06084 1.27064 1.49657 1.24982 0.94912 0.99346 0.94899 0.86528 0.79471 0.82509 0.78757 1.20082 1.21138 1.20076 1.20943 0.93128 0.90112 1.52335 0.92291 1.19163 0.94158 0.88791 0.99064 1.23767 0.96556 0.78660 1.01076 1.86709 1.41237 1.15090 1.81325 1.20767 0.85178 0.85119 0.73492 1.90807 1.14469 1.87974 1.46121 1.20474 0.89603 0.91866 0.99855 1.21738 1.02413 0.91317 0.98684 1.21417 0.93009 0.98287 0.96461 1.19046 0.94378 0.94709 1.00574 1.20979 0.94689 0.96428 1.00316 1.21024 0.94213 0.98586 0.98421 1.20954 1.00694 0.91888 0.99369 1.21011 0.91587 0.99332 0.97478 1.18981 0.94550 0.87452 0.99571 1.68031 1.08862 1.27816 1.07332 0.92665 0.95221 0.95230 0.92069 0.92080 0.82926 0.83423 0.85002 0.85328 0.84936 0.83921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.81 13.29 55.43 0.74 -26.08 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.53 -15.10 9.11 -34.44 -0.31 -15.41 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.03 0.69 5.35 -27.88 -0.15 0.54 16 10 C 0.07 1.66 5.41 37.16 0.20 1.86 16 11 O -0.33 -7.22 10.02 -40.39 -0.40 -7.63 16 12 C 0.51 9.89 7.95 34.82 0.28 10.17 16 13 O -0.51 -10.17 16.07 -19.20 -0.31 -10.48 16 14 C 0.13 2.18 6.75 -82.97 -0.56 1.62 16 15 C -0.12 -1.50 9.54 -39.42 -0.38 -1.87 16 16 C -0.07 -0.64 9.88 -39.25 -0.39 -1.03 16 17 C -0.09 -0.92 5.75 -106.71 -0.61 -1.54 16 18 C -0.11 -0.83 9.77 -39.52 -0.39 -1.21 16 19 C -0.10 -0.74 9.96 -39.89 -0.40 -1.14 16 20 C -0.11 -0.89 9.94 -39.94 -0.40 -1.29 16 21 C -0.08 -0.84 9.99 -39.41 -0.39 -1.24 16 22 C 0.12 1.60 6.61 -84.86 -0.56 1.04 16 23 N -0.41 -6.79 10.06 -7.55 -0.08 -6.86 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 29 H 0.15 1.67 7.60 -52.49 -0.40 1.27 16 30 H 0.15 0.86 8.06 -52.49 -0.42 0.43 16 31 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 32 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 33 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 34 H 0.14 1.54 8.06 -52.48 -0.42 1.11 16 LS Contribution 308.24 15.07 4.65 4.65 Total: -1.00 -33.28 308.24 -8.33 -41.61 By element: Atomic # 1 Polarization: -0.29 SS G_CDS: -3.75 Total: -4.03 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -4.15 Total: -7.84 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: 0.66 Total: -32.94 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.71 Total: -18.11 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.28 -8.33 -41.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916613052.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.798 kcal (2) G-P(sol) polarization free energy of solvation -33.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds