Wall clock time and date at job start Mon Mar 30 2020 01:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99713 * 3 2 1 5 5 H 1.48494 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47196 * 120.00210 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 O 1.45206 * 109.46777 * 180.02562 * 10 9 7 12 12 C 1.34662 * 116.99872 * 179.97438 * 11 10 9 13 13 O 1.21413 * 120.00259 * 0.02562 * 12 11 10 14 14 C 1.48184 * 120.00004 * 179.97438 * 12 11 10 15 15 C 1.40311 * 119.24431 * 179.97438 * 14 12 11 16 16 C 1.36513 * 119.81287 * 179.97438 * 15 14 12 17 17 C 1.40754 * 118.24246 * 0.02562 * 16 15 14 18 18 C 1.40423 * 121.27939 * 180.02562 * 17 16 15 19 19 C 1.36129 * 119.65455 * 180.02562 * 18 17 16 20 20 C 1.39443 * 120.91523 * 359.95084 * 19 18 17 21 21 C 1.35983 * 121.08659 * 0.03094 * 20 19 18 22 22 C 1.40838 * 119.73529 * 359.97438 * 21 20 19 23 23 N 1.31913 * 119.24531 * 359.72956 * 14 12 11 24 24 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 26 26 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 27 27 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 28 28 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 29 29 H 1.07998 * 120.09617 * 0.02562 * 15 14 12 30 30 H 1.07997 * 120.87335 * 179.97438 * 16 15 14 31 31 H 1.07997 * 120.17136 * 359.96777 * 18 17 16 32 32 H 1.07992 * 119.54255 * 179.97438 * 19 18 17 33 33 H 1.08004 * 119.45574 * 180.02562 * 20 19 18 34 34 H 1.08004 * 120.13599 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 8 1.5192 -4.9196 0.0033 12 6 2.2526 -6.0490 0.0036 13 8 3.4651 -5.9855 0.0040 14 6 1.5799 -7.3693 0.0048 15 6 2.3596 -8.5359 0.0046 16 6 1.7519 -9.7583 0.0061 17 6 0.3451 -9.8028 0.0073 18 6 -0.3457 -11.0254 0.0094 19 6 -1.7070 -11.0298 0.0100 20 6 -2.4273 -9.8358 0.0095 21 6 -1.7928 -8.6331 0.0078 22 6 -0.3852 -8.5858 0.0071 23 7 0.2618 -7.4210 0.0108 24 1 -0.4851 0.8400 -0.0004 25 1 0.6240 -2.5576 -0.8880 26 1 0.6247 -2.5563 0.8920 27 1 2.8719 -3.6036 0.8927 28 1 2.8719 -3.6052 -0.8873 29 1 3.4374 -8.4669 0.0041 30 1 2.3353 -10.6671 0.0056 31 1 0.2002 -11.9572 0.0097 32 1 -2.2364 -11.9711 0.0112 33 1 -3.5069 -9.8669 0.0103 34 1 -2.3660 -7.7177 0.0078 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916613052.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:52 Heat of formation + Delta-G solvation = -56.913135 kcal Electronic energy + Delta-G solvation = -18928.000843 eV Core-core repulsion = 15789.848998 eV Total energy + Delta-G solvation = -3138.151845 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.18087 -41.16597 -38.24551 -37.64012 -35.48830 -34.66332 -32.52906 -31.76682 -31.05255 -27.56692 -26.27362 -24.79879 -23.25277 -23.11480 -22.42365 -19.56314 -19.19560 -18.46408 -18.19446 -17.68354 -17.60686 -16.60170 -16.19317 -15.73282 -15.63866 -15.29409 -14.92851 -14.67263 -14.41656 -14.25374 -14.06936 -13.23989 -13.09668 -12.78084 -12.68322 -12.60841 -12.59202 -12.47959 -12.08567 -11.70482 -11.66681 -11.54181 -11.47514 -10.69834 -10.63068 -9.92920 -9.31898 -8.28152 -6.42722 -0.98819 -0.41337 0.80762 1.12553 1.38389 1.44506 1.48143 1.54886 2.02494 2.38240 2.90794 3.01585 3.05696 3.52286 3.61107 3.73289 3.83947 4.07627 4.16697 4.17507 4.21959 4.35209 4.46663 4.62859 4.74519 4.82272 4.98589 5.05737 5.15015 5.34965 5.38422 5.41330 5.41878 5.46622 5.69195 5.83785 6.02617 6.37326 6.70080 6.73787 7.27118 8.84695 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.032486 B = 0.003362 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.703152 B = 8325.292652 C = 9166.548523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.978 3.022 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.552 4.552 8 H 0.069 0.931 9 C 0.032 3.968 10 C 0.086 3.914 11 O -0.349 6.349 12 C 0.510 3.490 13 O -0.519 6.519 14 C 0.104 3.896 15 C -0.134 4.134 16 C -0.040 4.040 17 C -0.094 4.094 18 C -0.097 4.097 19 C -0.097 4.097 20 C -0.089 4.089 21 C -0.114 4.114 22 C 0.090 3.910 23 N -0.455 5.455 24 H 0.268 0.732 25 H 0.003 0.997 26 H 0.003 0.997 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.163 0.837 30 H 0.199 0.801 31 H 0.174 0.826 32 H 0.171 0.829 33 H 0.161 0.839 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.872 -27.801 0.014 27.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.195 4.195 3 Si 0.801 3.199 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.589 4.589 8 H 0.087 0.913 9 C -0.005 4.005 10 C 0.013 3.987 11 O -0.264 6.264 12 C 0.354 3.646 13 O -0.408 6.408 14 C -0.047 4.047 15 C -0.154 4.154 16 C -0.065 4.065 17 C -0.096 4.096 18 C -0.116 4.116 19 C -0.115 4.115 20 C -0.109 4.109 21 C -0.133 4.133 22 C -0.034 4.034 23 N -0.167 5.167 24 H 0.077 0.923 25 H 0.022 0.978 26 H 0.021 0.979 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.181 0.819 30 H 0.216 0.784 31 H 0.192 0.808 32 H 0.188 0.812 33 H 0.179 0.821 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.218 -26.839 0.021 26.930 hybrid contribution 0.716 0.977 -0.003 1.211 sum -1.502 -25.862 0.017 25.905 Atomic orbital electron populations 1.70111 1.07990 1.28427 1.50212 1.26040 0.95873 1.03638 0.93927 0.85306 0.78120 0.77035 0.79415 1.18893 1.20411 1.18885 1.21343 0.93798 0.90982 1.52809 0.91332 1.18967 0.94318 0.90746 0.96465 1.23322 0.95217 0.78659 1.01453 1.86695 1.41927 1.15561 1.82200 1.21462 0.85277 0.85420 0.72458 1.90763 1.14904 1.88211 1.46958 1.20265 0.90179 0.90924 1.03293 1.21836 1.02627 0.90975 0.99945 1.21961 0.92827 0.98775 0.92966 1.19407 0.95125 0.94895 1.00162 1.21464 0.95252 0.96442 0.98404 1.21553 0.94280 0.99537 0.96099 1.21379 1.02287 0.91144 0.96084 1.21103 0.91039 1.00488 1.00635 1.19406 0.95565 0.87774 1.00674 1.67841 1.09404 1.30416 1.09016 0.92282 0.97848 0.97858 0.91593 0.91603 0.81923 0.78385 0.80848 0.81186 0.82124 0.85369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.67 13.29 21.45 0.28 -57.38 16 2 C 0.00 0.24 5.46 84.65 0.46 0.70 16 3 Si 0.98 44.77 29.54 68.60 2.03 46.80 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 7 C -0.55 -32.57 9.11 25.60 0.23 -32.34 16 8 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 9 C 0.03 1.86 5.35 29.85 0.16 2.02 16 10 C 0.09 4.23 5.41 71.98 0.39 4.62 16 11 O -0.35 -16.49 10.02 -55.71 -0.56 -17.04 16 12 C 0.51 21.00 7.95 70.47 0.56 21.56 16 13 O -0.52 -21.83 16.07 20.12 0.32 -21.50 16 14 C 0.10 3.56 6.75 42.28 0.29 3.84 16 15 C -0.13 -3.24 9.54 22.37 0.21 -3.03 16 16 C -0.04 -0.66 9.88 22.48 0.22 -0.44 16 17 C -0.09 -1.81 5.75 -21.22 -0.12 -1.93 16 18 C -0.10 -1.05 9.77 22.31 0.22 -0.83 16 19 C -0.10 -0.90 9.96 22.07 0.22 -0.68 16 20 C -0.09 -1.22 9.94 22.04 0.22 -1.00 16 21 C -0.11 -2.59 9.99 22.38 0.22 -2.37 16 22 C 0.09 2.48 6.61 40.48 0.27 2.75 16 23 N -0.45 -16.18 10.06 -177.80 -1.79 -17.97 16 24 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 25 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 26 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 27 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 28 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 29 H 0.16 3.46 7.60 -2.91 -0.02 3.44 16 30 H 0.20 1.18 8.06 -2.91 -0.02 1.15 16 31 H 0.17 0.47 8.06 -2.91 -0.02 0.45 16 32 H 0.17 0.27 8.06 -2.91 -0.02 0.25 16 33 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 34 H 0.13 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -77.91 308.24 4.95 -72.96 By element: Atomic # 1 Polarization: 0.14 SS G_CDS: 1.11 Total: 1.25 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: 3.55 Total: -7.11 kcal Atomic # 7 Polarization: -73.85 SS G_CDS: -1.50 Total: -75.35 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -0.23 Total: -38.55 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -77.91 4.95 -72.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916613052.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.047 kcal (2) G-P(sol) polarization free energy of solvation -77.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds