Wall clock time and date at job start Mon Mar 30 2020 00:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 117.00077 * 2 1 4 4 O 1.20833 * 120.00103 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00302 * 180.02562 * 3 2 1 6 6 N 1.46506 * 109.47418 * 180.02562 * 5 3 2 7 7 C 1.35309 * 125.86802 * 124.71108 * 6 5 3 8 8 C 1.35355 * 106.17081 * 179.90500 * 7 6 5 9 9 C 1.50700 * 126.75087 * 180.12669 * 8 7 6 10 10 S 1.81398 * 109.46977 * 270.24611 * 9 8 7 11 11 C 1.81409 * 102.99827 * 180.02562 * 10 9 8 12 12 C 1.50705 * 109.46934 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99679 * 359.97438 * 12 11 10 14 14 C 1.37872 * 119.99606 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99926 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 120.00410 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47052 * 89.99662 * 16 14 12 18 18 H 1.48491 * 109.47168 * 209.99916 * 16 14 12 19 19 H 1.48500 * 109.46706 * 329.99876 * 16 14 12 20 20 N 1.33773 * 106.49889 * 0.35002 * 8 7 6 21 21 N 1.28641 * 108.88300 * 359.77808 * 20 8 7 22 22 H 1.09001 * 109.46626 * 60.00180 * 1 2 3 23 23 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47070 * 300.00162 * 1 2 3 25 25 H 1.09009 * 109.46972 * 299.99362 * 5 3 2 26 26 H 1.08995 * 109.47473 * 59.99636 * 5 3 2 27 27 H 1.07999 * 126.91917 * 0.02562 * 7 6 5 28 28 H 1.09004 * 109.47241 * 30.24548 * 9 8 7 29 29 H 1.08997 * 109.47282 * 150.24581 * 9 8 7 30 30 H 1.09003 * 109.46813 * 300.00023 * 11 10 9 31 31 H 1.08997 * 109.47040 * 59.99800 * 11 10 9 32 32 H 0.96993 * 120.00133 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.8057 3.2624 0.9015 8 6 4.9194 4.5579 0.5261 9 6 5.7334 5.6265 1.2091 10 16 4.7165 6.4514 2.4644 11 6 5.8505 7.6828 3.1635 12 6 5.1422 8.4638 4.2403 13 1 4.1127 8.2420 4.4797 14 6 5.8085 9.4616 4.9196 15 7 5.1903 10.1436 5.8589 16 14 7.5889 9.8458 4.5049 17 1 7.6372 10.8802 3.4405 18 1 8.2818 10.3504 5.7174 19 1 8.2631 8.6119 4.0270 20 7 4.1632 4.7042 -0.5676 21 7 3.6211 3.5732 -0.8534 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 3.9564 0.7806 0.8893 26 1 3.9558 0.7809 -0.8907 27 1 5.2790 2.7887 1.7488 28 1 6.6020 5.1724 1.6861 29 1 6.0647 6.3578 0.4719 30 1 6.7164 7.1775 3.5915 31 1 6.1785 8.3625 2.3771 32 1 5.6588 10.8457 6.3365 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000917847139.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:03 Heat of formation + Delta-G solvation = 21.953359 kcal Electronic energy + Delta-G solvation = -17453.790151 eV Core-core repulsion = 14350.961822 eV Total energy + Delta-G solvation = -3102.828329 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.35934 -40.85737 -37.10035 -35.04336 -33.01594 -32.47605 -30.05015 -29.34831 -27.85181 -27.27702 -23.01336 -22.64234 -21.76368 -20.89490 -18.40060 -17.87390 -17.12743 -16.88219 -16.75215 -16.03275 -15.41970 -14.95903 -14.39004 -14.26741 -14.00543 -13.75837 -13.34668 -13.18500 -12.89764 -12.57838 -12.34209 -12.26516 -11.66406 -11.29217 -11.20598 -10.84827 -10.77884 -10.67355 -10.21079 -10.06614 -9.67985 -9.12826 -8.81505 -8.69169 -6.77606 -6.15644 -4.17790 1.24306 1.61384 1.78786 2.07753 2.40914 3.09135 3.23539 3.30761 3.30844 3.67600 3.92487 4.12327 4.32786 4.32945 4.35637 4.67879 4.77496 4.80415 5.00637 5.10147 5.15521 5.33745 5.67939 5.79160 5.85648 6.12372 6.32548 6.60170 6.71467 7.16317 7.44856 8.32834 8.48407 8.87601 9.39796 10.96565 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.038553 B = 0.003302 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.093928 B = 8478.092898 C = 8891.363225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.444 3.556 4 O -0.467 6.467 5 C 0.132 3.868 6 N -0.299 5.299 7 C -0.033 4.033 8 C 0.014 3.986 9 C -0.019 4.019 10 S -0.250 6.250 11 C 0.044 3.956 12 C -0.513 4.513 13 H 0.083 0.917 14 C 0.079 3.921 15 N -0.892 5.892 16 Si 0.879 3.121 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.266 1.266 20 N -0.246 5.246 21 N -0.063 5.063 22 H 0.067 0.933 23 H 0.106 0.894 24 H 0.067 0.933 25 H 0.149 0.851 26 H 0.142 0.858 27 H 0.197 0.803 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.036 0.964 31 H 0.032 0.968 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.001 -24.306 -11.580 26.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.273 6.273 3 C 0.283 3.717 4 O -0.351 6.351 5 C 0.009 3.991 6 N -0.094 5.094 7 C -0.184 4.184 8 C -0.123 4.123 9 C -0.168 4.168 10 S -0.023 6.023 11 C -0.104 4.104 12 C -0.552 4.552 13 H 0.101 0.899 14 C -0.125 4.125 15 N -0.530 5.530 16 Si 0.706 3.294 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.190 1.190 20 N -0.115 5.115 21 N -0.043 5.043 22 H 0.085 0.915 23 H 0.124 0.876 24 H 0.085 0.915 25 H 0.167 0.833 26 H 0.159 0.841 27 H 0.213 0.787 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.112 -23.769 -12.434 27.005 hybrid contribution 2.472 0.235 0.613 2.558 sum -0.640 -23.534 -11.821 26.344 Atomic orbital electron populations 1.23363 0.75031 1.04067 1.03160 1.86430 1.24352 1.32173 1.84377 1.23280 0.91435 0.82437 0.74538 1.90864 1.66140 1.35967 1.42124 1.21232 0.89965 0.78722 1.09187 1.46715 1.32651 1.09664 1.20339 1.23317 1.01291 0.94877 0.98880 1.21208 1.01916 0.93267 0.95919 1.21459 0.98332 0.97187 0.99860 1.87109 1.25955 1.45813 1.43391 1.21458 0.95608 0.94477 0.98825 1.20474 1.00625 1.17086 1.17018 0.89861 1.24862 0.98108 0.95138 0.94416 1.69870 1.37230 1.22485 1.23400 0.86792 0.85061 0.79228 0.78358 1.19853 1.20872 1.19024 1.75127 1.08405 1.14151 1.13853 1.78396 1.18704 0.92690 1.14479 0.91468 0.87581 0.91473 0.83320 0.84063 0.78653 0.88929 0.88783 0.94603 0.94960 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.29 16 2 O -0.36 -2.64 10.57 -39.24 -0.41 -3.06 16 3 C 0.44 4.23 7.97 36.00 0.29 4.52 16 4 O -0.47 -6.85 15.42 -18.76 -0.29 -7.14 16 5 C 0.13 0.83 7.05 -5.19 -0.04 0.80 16 6 N -0.30 -3.55 3.20 -62.44 -0.20 -3.75 16 7 C -0.03 -0.40 11.50 -17.05 -0.20 -0.59 16 8 C 0.01 0.22 6.51 -82.77 -0.54 -0.32 16 9 C -0.02 -0.31 6.50 36.01 0.23 -0.08 16 10 S -0.25 -5.45 21.64 -107.50 -2.33 -7.78 16 11 C 0.04 1.07 4.77 36.01 0.17 1.24 16 12 C -0.51 -14.84 9.68 -34.44 -0.33 -15.18 16 13 H 0.08 2.66 7.96 -52.49 -0.42 2.24 16 14 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 15 N -0.89 -27.25 13.96 55.43 0.77 -26.48 16 16 Si 0.88 21.01 27.47 -169.99 -4.67 16.34 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 20 N -0.25 -4.48 12.41 33.29 0.41 -4.07 16 21 N -0.06 -1.03 12.13 60.35 0.73 -0.29 16 22 H 0.07 0.42 8.13 -51.93 -0.42 0.00 16 23 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.07 0.44 8.13 -51.93 -0.42 0.01 16 25 H 0.15 0.30 8.07 -51.92 -0.42 -0.12 16 26 H 0.14 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.20 1.50 8.06 -52.49 -0.42 1.08 16 28 H 0.09 1.26 8.14 -51.92 -0.42 0.84 16 29 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 30 H 0.04 0.83 7.20 -51.92 -0.37 0.46 16 31 H 0.03 0.76 7.57 -51.93 -0.39 0.37 16 32 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 303.55 15.07 4.57 4.57 Total: -1.00 -38.00 303.55 -4.58 -42.57 By element: Atomic # 1 Polarization: -1.06 SS G_CDS: -3.73 Total: -4.79 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: 0.56 Total: -6.14 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 1.72 Total: -34.59 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -0.70 Total: -10.20 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal Atomic # 16 Polarization: -5.45 SS G_CDS: -2.33 Total: -7.78 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -38.00 -4.58 -42.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917847139.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.527 kcal (2) G-P(sol) polarization free energy of solvation -37.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds