Wall clock time and date at job start Mon Mar 30 2020 00:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 117.00077 * 2 1 4 4 O 1.20833 * 120.00103 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00302 * 180.02562 * 3 2 1 6 6 N 1.46506 * 109.47418 * 180.02562 * 5 3 2 7 7 C 1.35309 * 125.86802 * 124.71108 * 6 5 3 8 8 C 1.35355 * 106.17081 * 179.90500 * 7 6 5 9 9 C 1.50700 * 126.75087 * 180.12669 * 8 7 6 10 10 S 1.81398 * 109.46977 * 270.24611 * 9 8 7 11 11 C 1.81409 * 102.99827 * 180.02562 * 10 9 8 12 12 C 1.50705 * 109.46934 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99679 * 359.97438 * 12 11 10 14 14 C 1.37872 * 119.99606 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99926 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 120.00410 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47052 * 89.99662 * 16 14 12 18 18 H 1.48491 * 109.47168 * 209.99916 * 16 14 12 19 19 H 1.48500 * 109.46706 * 329.99876 * 16 14 12 20 20 N 1.33773 * 106.49889 * 0.35002 * 8 7 6 21 21 N 1.28641 * 108.88300 * 359.77808 * 20 8 7 22 22 H 1.09001 * 109.46626 * 60.00180 * 1 2 3 23 23 H 1.09001 * 109.47153 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47070 * 300.00162 * 1 2 3 25 25 H 1.09009 * 109.46972 * 299.99362 * 5 3 2 26 26 H 1.08995 * 109.47473 * 59.99636 * 5 3 2 27 27 H 1.07999 * 126.91917 * 0.02562 * 7 6 5 28 28 H 1.09004 * 109.47241 * 30.24548 * 9 8 7 29 29 H 1.08997 * 109.47282 * 150.24581 * 9 8 7 30 30 H 1.09003 * 109.46813 * 300.00023 * 11 10 9 31 31 H 1.08997 * 109.47040 * 59.99800 * 11 10 9 32 32 H 0.96993 * 120.00133 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6798 0.0002 7 6 4.8057 3.2624 0.9015 8 6 4.9194 4.5579 0.5261 9 6 5.7334 5.6265 1.2091 10 16 4.7165 6.4514 2.4644 11 6 5.8505 7.6828 3.1635 12 6 5.1422 8.4638 4.2403 13 1 4.1127 8.2420 4.4797 14 6 5.8085 9.4616 4.9196 15 7 5.1903 10.1436 5.8589 16 14 7.5889 9.8458 4.5049 17 1 7.6372 10.8802 3.4405 18 1 8.2818 10.3504 5.7174 19 1 8.2631 8.6119 4.0270 20 7 4.1632 4.7042 -0.5676 21 7 3.6211 3.5732 -0.8534 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 3.9564 0.7806 0.8893 26 1 3.9558 0.7809 -0.8907 27 1 5.2790 2.7887 1.7488 28 1 6.6020 5.1724 1.6861 29 1 6.0647 6.3578 0.4719 30 1 6.7164 7.1775 3.5915 31 1 6.1785 8.3625 2.3771 32 1 5.6588 10.8457 6.3365 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000917847139.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:03 Heat of formation + Delta-G solvation = -6.324842 kcal Electronic energy + Delta-G solvation = -17455.016386 eV Core-core repulsion = 14350.961822 eV Total energy + Delta-G solvation = -3104.054564 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.37546 -41.58922 -37.82938 -35.96146 -35.18117 -33.58145 -31.42969 -30.78926 -28.80913 -28.05687 -24.68049 -23.88506 -22.83593 -21.77252 -19.13255 -19.08079 -18.66714 -17.83410 -17.51472 -17.25143 -16.75923 -16.09319 -15.94498 -15.27158 -15.15549 -14.84757 -14.67979 -14.52532 -14.20750 -13.86029 -13.65089 -13.09788 -12.77168 -12.62795 -12.42650 -12.09658 -12.00483 -11.93395 -11.83856 -11.75429 -11.16452 -10.87439 -10.74558 -10.08616 -8.49479 -8.35176 -6.45382 0.31640 0.70265 0.92421 1.06931 1.37036 1.39703 1.50283 1.74206 1.77238 2.06619 2.32413 2.98150 3.16581 3.49707 3.64744 3.84844 4.01124 4.07271 4.25200 4.26839 4.33931 4.54299 4.65706 4.67316 4.75897 4.81250 4.99650 5.16953 5.36175 5.47575 6.09169 6.48242 6.58782 7.16979 7.40956 8.81158 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.038553 B = 0.003302 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.093928 B = 8478.092898 C = 8891.363225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.346 6.346 3 C 0.446 3.554 4 O -0.530 6.530 5 C 0.125 3.875 6 N -0.290 5.290 7 C 0.000 4.000 8 C -0.025 4.025 9 C 0.007 3.993 10 S -0.305 6.305 11 C 0.052 3.948 12 C -0.531 4.531 13 H 0.030 0.970 14 C 0.016 3.984 15 N -0.944 5.944 16 Si 0.958 3.042 17 H -0.266 1.266 18 H -0.277 1.277 19 H -0.236 1.236 20 N -0.294 5.294 21 N -0.096 5.096 22 H 0.058 0.942 23 H 0.141 0.859 24 H 0.056 0.944 25 H 0.204 0.796 26 H 0.181 0.819 27 H 0.247 0.753 28 H 0.130 0.870 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.040 0.960 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.853 -27.287 -12.221 29.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.262 6.262 3 C 0.288 3.712 4 O -0.418 6.418 5 C 0.005 3.995 6 N -0.084 5.084 7 C -0.153 4.153 8 C -0.163 4.163 9 C -0.142 4.142 10 S -0.078 6.078 11 C -0.096 4.096 12 C -0.569 4.569 13 H 0.048 0.952 14 C -0.183 4.183 15 N -0.583 5.583 16 Si 0.779 3.221 17 H -0.191 1.191 18 H -0.203 1.203 19 H -0.159 1.159 20 N -0.162 5.162 21 N -0.075 5.075 22 H 0.076 0.924 23 H 0.159 0.841 24 H 0.075 0.925 25 H 0.221 0.779 26 H 0.198 0.802 27 H 0.263 0.737 28 H 0.148 0.852 29 H 0.111 0.889 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.282 -26.808 -13.103 29.840 hybrid contribution 1.415 0.951 0.792 1.880 sum 1.133 -25.857 -12.310 28.660 Atomic orbital electron populations 1.23585 0.74318 1.06078 1.02283 1.86444 1.25078 1.31025 1.83634 1.23969 0.92748 0.81956 0.72549 1.90861 1.67707 1.37939 1.45328 1.21995 0.87675 0.76139 1.13717 1.47110 1.31320 1.11015 1.18974 1.24005 0.99204 0.93530 0.98538 1.21327 1.03447 0.94883 0.96593 1.21421 0.98057 0.97039 0.97731 1.87237 1.28347 1.46254 1.45963 1.21221 0.95836 0.94888 0.97629 1.20693 0.98941 1.18430 1.18884 0.95155 1.25968 1.03974 0.94533 0.93843 1.70036 1.39873 1.23442 1.24953 0.85561 0.77931 0.80193 0.78412 1.19060 1.20273 1.15893 1.75052 1.09700 1.15790 1.15641 1.78297 1.19679 0.93204 1.16293 0.92364 0.84065 0.92469 0.77921 0.80195 0.73724 0.85204 0.88949 0.92749 0.94195 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.52 16 2 O -0.35 -4.34 10.57 -51.35 -0.54 -4.89 16 3 C 0.45 7.65 7.97 71.23 0.57 8.21 16 4 O -0.53 -15.62 15.42 21.94 0.34 -15.28 16 5 C 0.13 1.05 7.05 85.63 0.60 1.65 16 6 N -0.29 -6.04 3.20 -351.46 -1.12 -7.16 16 7 C 0.00 -0.01 11.50 83.49 0.96 0.95 16 8 C -0.02 -0.74 6.51 41.60 0.27 -0.47 16 9 C 0.01 0.21 6.50 71.24 0.46 0.67 16 10 S -0.30 -13.29 21.64 -56.49 -1.22 -14.51 16 11 C 0.05 2.49 4.77 71.24 0.34 2.83 16 12 C -0.53 -31.58 9.68 25.60 0.25 -31.34 16 13 H 0.03 2.06 7.96 -2.91 -0.02 2.04 16 14 C 0.02 0.95 5.47 84.65 0.46 1.41 16 15 N -0.94 -59.37 13.96 21.45 0.30 -59.08 16 16 Si 0.96 42.61 27.47 68.60 1.88 44.50 16 17 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 18 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 19 H -0.24 -9.31 6.54 99.48 0.65 -8.66 16 20 N -0.29 -10.63 12.41 -48.60 -0.60 -11.23 16 21 N -0.10 -3.03 12.13 37.02 0.45 -2.58 16 22 H 0.06 0.73 8.13 -2.39 -0.02 0.71 16 23 H 0.14 0.46 8.14 -2.39 -0.02 0.44 16 24 H 0.06 0.73 8.13 -2.39 -0.02 0.71 16 25 H 0.20 -0.49 8.07 -2.38 -0.02 -0.51 16 26 H 0.18 0.21 8.14 -2.39 -0.02 0.19 16 27 H 0.25 2.22 8.06 -2.91 -0.02 2.19 16 28 H 0.13 2.99 8.14 -2.39 -0.02 2.97 16 29 H 0.09 2.85 8.14 -2.39 -0.02 2.84 16 30 H 0.05 2.38 7.20 -2.39 -0.02 2.36 16 31 H 0.04 1.83 7.57 -2.39 -0.02 1.81 16 32 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -90.43 303.55 5.67 -84.76 By element: Atomic # 1 Polarization: -1.06 SS G_CDS: 1.08 Total: 0.02 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: 5.11 Total: -14.55 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -0.98 Total: -80.05 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.20 Total: -20.17 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 1.88 Total: 44.50 kcal Atomic # 16 Polarization: -13.29 SS G_CDS: -1.22 Total: -14.51 kcal Total: -90.43 5.67 -84.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917847139.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.433 kcal (2) G-P(sol) polarization free energy of solvation -90.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds