Wall clock time and date at job start Mon Mar 30 2020 00:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 119.99857 * 2 1 4 4 C 1.50704 * 109.47627 * 270.00012 * 3 2 1 5 5 H 1.07998 * 119.99726 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00234 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99826 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99788 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47013 * 90.00389 * 8 6 4 10 10 H 1.48505 * 109.46899 * 210.00255 * 8 6 4 11 11 H 1.48498 * 109.47249 * 329.99880 * 8 6 4 12 12 C 1.34771 * 120.00211 * 180.02562 * 2 1 3 13 13 O 1.21590 * 120.00225 * 184.41328 * 12 2 1 14 14 C 1.47547 * 119.99938 * 4.41248 * 12 2 1 15 15 C 1.39767 * 120.16945 * 310.82618 * 14 12 2 16 16 C 1.37953 * 119.92183 * 180.02562 * 15 14 12 17 17 F 1.35101 * 119.86627 * 179.97438 * 16 15 14 18 18 C 1.38740 * 120.26851 * 0.02562 * 16 15 14 19 19 C 1.38204 * 120.34084 * 359.67864 * 18 16 15 20 20 F 1.35098 * 119.96583 * 180.29907 * 19 18 16 21 21 C 1.38901 * 120.07146 * 0.60450 * 19 18 16 22 22 O 1.35752 * 120.13371 * 179.70100 * 21 19 18 23 23 H 1.08997 * 109.47419 * 273.02023 * 1 2 3 24 24 H 1.09003 * 109.47242 * 33.02148 * 1 2 3 25 25 H 1.08993 * 109.46958 * 153.01721 * 1 2 3 26 26 H 1.09005 * 109.47448 * 30.00321 * 3 2 1 27 27 H 1.09004 * 109.47133 * 150.00307 * 3 2 1 28 28 H 0.97003 * 119.99654 * 179.97438 * 7 6 4 29 29 H 1.07999 * 120.03780 * 359.97438 * 15 14 12 30 30 H 1.07997 * 119.82305 * 179.97438 * 18 16 15 31 31 H 0.96703 * 113.99373 * 269.72187 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7039 -1.4208 5 1 2.0974 1.0964 -2.2417 6 6 3.1259 2.8781 -1.6727 7 7 3.5532 3.6182 -0.6730 8 14 3.4366 3.4178 -3.4338 9 1 2.3063 4.2604 -3.9000 10 1 4.6967 4.2011 -3.4965 11 1 3.5541 2.2208 -4.3049 12 6 2.1389 -1.1671 -0.0005 13 8 3.3521 -1.1687 0.0805 14 6 1.4044 -2.4430 -0.0994 15 6 0.3108 -2.6904 0.7349 16 6 -0.3719 -3.8853 0.6385 17 9 -1.4286 -4.1235 1.4459 18 6 0.0229 -4.8439 -0.2835 19 6 1.0990 -4.6083 -1.1181 20 9 1.4733 -5.5445 -2.0173 21 6 1.8002 -3.4125 -1.0291 22 8 2.8611 -3.1823 -1.8441 23 1 -0.3634 0.0541 1.0262 24 1 -0.3634 0.8617 -0.5600 25 1 -0.3633 -0.9157 -0.4662 26 1 1.6084 2.0284 0.5139 27 1 3.1499 1.1384 0.5138 28 1 4.0300 4.4441 -0.8502 29 1 0.0010 -1.9473 1.4548 30 1 -0.5164 -5.7770 -0.3526 31 1 3.7081 -3.4725 -1.4786 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930592855.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:05 Heat of formation + Delta-G solvation = -132.364792 kcal Electronic energy + Delta-G solvation = -20604.594491 eV Core-core repulsion = 16908.941287 eV Total energy + Delta-G solvation = -3695.653204 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.20252 -49.15704 -40.26426 -38.13828 -36.71404 -34.94327 -32.76094 -31.29860 -29.49565 -27.83421 -26.16612 -24.42099 -22.99690 -22.42595 -19.65550 -18.57839 -17.86042 -17.55665 -16.63036 -16.38065 -16.20951 -15.90447 -15.63541 -15.39725 -15.10310 -14.61390 -14.30468 -14.28798 -13.81975 -13.14443 -12.80757 -12.37319 -12.28070 -12.27197 -11.89385 -11.66424 -11.23174 -10.95217 -10.85526 -10.62543 -10.20436 -9.70707 -9.37590 -9.12119 -8.73914 -8.47139 -7.79682 -6.08501 -4.13460 0.49128 0.65051 2.78200 3.22906 3.29384 3.36098 3.42614 3.48250 3.86431 3.89667 4.26944 4.38933 4.46998 4.57634 4.78757 5.25378 5.32933 5.36966 5.55551 5.57402 5.65589 5.78665 5.81631 6.14406 6.35542 6.92424 7.32760 7.40788 7.54146 7.87488 8.16318 8.20564 8.73985 8.93586 9.51883 10.99701 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.024534 B = 0.005363 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.020219 B = 5220.056065 C = 5860.307336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.588 5.588 3 C 0.244 3.756 4 C -0.529 4.529 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.555 3.445 13 O -0.526 6.526 14 C -0.085 4.085 15 C -0.122 4.122 16 C 0.114 3.886 17 F -0.129 7.129 18 C -0.167 4.167 19 C 0.098 3.902 20 F -0.123 7.123 21 C 0.116 3.884 22 O -0.470 6.470 23 H 0.050 0.950 24 H 0.077 0.923 25 H 0.061 0.939 26 H 0.037 0.963 27 H 0.048 0.952 28 H 0.264 0.736 29 H 0.154 0.846 30 H 0.154 0.846 31 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.793 -15.259 2.826 17.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.319 5.319 3 C 0.126 3.874 4 C -0.568 4.568 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.340 3.660 13 O -0.403 6.403 14 C -0.090 4.090 15 C -0.141 4.141 16 C 0.095 3.905 17 F -0.107 7.107 18 C -0.186 4.186 19 C 0.078 3.922 20 F -0.101 7.101 21 C 0.068 3.932 22 O -0.282 6.282 23 H 0.068 0.932 24 H 0.096 0.904 25 H 0.080 0.920 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.172 0.828 30 H 0.172 0.828 31 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -8.475 -14.839 2.531 17.275 hybrid contribution 0.281 -0.045 -0.740 0.793 sum -8.193 -14.884 1.791 17.084 Atomic orbital electron populations 1.21896 0.81205 1.03038 1.00809 1.48093 1.06419 1.07455 1.69913 1.19401 0.92692 0.77445 0.97872 1.21423 1.36809 1.06444 0.92136 0.92275 1.24923 0.95211 0.96295 0.97557 1.69930 1.38273 1.14325 1.30786 0.86477 0.77702 0.78649 0.84532 1.20591 1.21033 1.19777 1.17636 0.87086 0.82734 0.78530 1.90774 1.12955 1.86673 1.49926 1.20419 0.96337 0.96769 0.95437 1.21394 0.94859 0.96892 1.00978 1.17011 0.87288 0.94262 0.91972 1.91544 1.53605 1.94617 1.70948 1.20999 0.98644 1.01657 0.97340 1.17512 0.96877 0.86486 0.91345 1.91538 1.90662 1.63094 1.64813 1.18341 0.92246 0.90554 0.92041 1.84803 1.16743 1.84581 1.42047 0.93179 0.90377 0.92014 0.94527 0.93415 0.92637 0.82790 0.82848 0.73860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.16 9.09 59.85 0.54 1.70 16 2 N -0.59 -12.27 2.86 -184.19 -0.53 -12.79 16 3 C 0.24 6.27 5.21 -5.19 -0.03 6.24 16 4 C -0.53 -14.90 9.39 -34.44 -0.32 -15.22 16 5 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -26.24 13.29 55.43 0.74 -25.51 16 8 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.56 11.43 6.94 -12.47 -0.09 11.34 16 13 O -0.53 -12.73 16.09 -4.01 -0.06 -12.80 16 14 C -0.09 -1.35 4.90 -104.86 -0.51 -1.86 16 15 C -0.12 -1.51 7.58 -39.11 -0.30 -1.81 16 16 C 0.11 1.26 7.28 -39.50 -0.29 0.97 16 17 F -0.13 -1.37 17.26 2.25 0.04 -1.33 16 18 C -0.17 -1.74 9.98 -39.41 -0.39 -2.13 16 19 C 0.10 1.23 7.30 -39.35 -0.29 0.94 16 20 F -0.12 -1.56 17.11 2.25 0.04 -1.53 16 21 C 0.12 1.74 6.70 -38.66 -0.26 1.48 16 22 O -0.47 -7.60 12.41 -28.26 -0.35 -7.95 16 23 H 0.05 0.64 7.56 -51.93 -0.39 0.24 16 24 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 25 H 0.06 0.84 5.68 -51.93 -0.29 0.54 16 26 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 27 H 0.05 1.37 7.36 -51.93 -0.38 0.99 16 28 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.15 1.70 6.58 -52.49 -0.35 1.36 16 30 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 31 H 0.40 4.98 9.06 45.56 0.41 5.39 16 LS Contribution 286.30 15.07 4.31 4.31 Total: -1.00 -32.78 286.30 -4.67 -37.45 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -1.81 Total: 0.02 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -2.03 Total: 3.32 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.21 Total: -38.30 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.42 Total: -20.74 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.08 Total: -2.86 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -32.78 -4.67 -37.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930592855.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.912 kcal (2) G-P(sol) polarization free energy of solvation -32.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds